Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

48724944 .. 48727325

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG269500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTCTTTGTTGCAATCATAATATTCGGTGCGTGTGCTTCTGATTCGTCGCCGATTGCTGATCGCGACCTGTGGAGTGAATTGTCAATCAGTTGGTTAAGGTTGCATAGAAGTGCCAGAGTACGATTGCTGAAAGTGGATCTGATGGGGTTTCTCAGCAAGATCTACAAGCAAATACTCGCAAAGAGTTTGGAGTTGCAGTCGCTGAATGAGTTGGGCTTTTCTAAAAGATATGTGAGGTGTTTGCAGGTTGTGAACAGCATGAAAGATTTGATCCAATTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCGAATGCAACCAAGCTTCATATGCAAAAGATGCAGGAAATGGAGCAGTTAGCAAGTGTTCAGGGCATGCCAACTGATAGGAACACTCTGAATAAGCTAATGGTAATAACAACCAGCACATGGCCAATGGAGGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

158

Amino Acids

18.18

Weight (kDa)

9.4

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	59 - 107	1.4e-08	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccII	CGCG	1 cut(s)	66
AclWI	GGATC	2 cut(s)	147, 268
AcoI	YGGCCR	1 cut(s)	458
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	310, 311, 456
AgsI	TTSAA	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	352, 433, 472
AluI	AGCT	3 cut(s)	352, 433, 472
AlwI	GGATC	2 cut(s)	147, 268
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	2 cut(s)	301, 458
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	460
BccI	CCATC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 311, 456
BseLI	CCNNNNNNNGG	3 cut(s)	310, 311, 456
BseMII	CTCAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	303, 460
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	310, 311, 456
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	303, 460
Bsp143I	GATC	4 cut(s)	61, 139, 162, 273
Bsp68I	TCGCGA	1 cut(s)	66
BspANI	GGCC	2 cut(s)	303, 460
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	147, 268
BssMI	GATC	4 cut(s)	61, 139, 162, 273
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	64, 142, 165, 276
BstMBI	GATC	4 cut(s)	61, 139, 162, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 367
BstNSI	RCATGY	2 cut(s)	338, 406
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	139, 162
BstYI	RGATCY	2 cut(s)	139, 162
BsuRI	GGCC	2 cut(s)	303, 460
BtuMI	TCGCGA	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	4 cut(s)	262, 335, 403, 456
CviJI	RGCY	7 cut(s)	219, 303, 315, 352, 433, 460, 472
CviKI_1	RGCY	7 cut(s)	219, 303, 315, 352, 433, 460, 472
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	63, 141, 164, 275
DpnII	GATC	4 cut(s)	61, 139, 162, 273
EaeI	YGGCCR	1 cut(s)	458
FaeI	CATG	4 cut(s)	265, 338, 406, 459
FaiI	YATR	9 cut(s)	20, 108, 234, 263, 336, 357, 359, 404, 457
FatI	CATG	4 cut(s)	261, 334, 402, 455
FauNDI	CATATG	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	303, 460
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	4 cut(s)	265, 338, 406, 459
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	43, 144, 426
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	7 cut(s)	14, 106, 199, 247, 344, 361, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 367
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	265, 338, 406, 459
Kzo9I	GATC	4 cut(s)	61, 139, 162, 273
LmnI	GCTCC	2 cut(s)	379, 469
LpnPI	CCDG	7 cut(s)	83, 130, 233, 299, 356, 383, 463
LweI	GCATC	1 cut(s)	357
MalI	GATC	4 cut(s)	63, 141, 164, 275
MboI	GATC	4 cut(s)	61, 139, 162, 273
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	2 cut(s)	139, 162
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	3 cut(s)	80, 278, 306
MluNI	TGGCCA	1 cut(s)	460
MnlI	CCTC	4 cut(s)	231, 304, 339, 460
Mox20I	TGGCCA	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	2 cut(s)	111, 339
Msp20I	TGGCCA	1 cut(s)	460
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	346
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	358, 367
NciI	CCSGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	4 cut(s)	61, 139, 162, 273
NlaIII	CATG	4 cut(s)	265, 338, 406, 459
NruI	TCGCGA	1 cut(s)	66
NspI	RCATGY	2 cut(s)	338, 406
PaeI	GCATGC	1 cut(s)	406
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	139, 162
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	2 cut(s)	111, 339
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	4 cut(s)	61, 139, 162, 273
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	8 cut(s)	72, 104, 242, 252, 324, 354, 435, 474
SfaNI	GCATC	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	111, 339
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	3 cut(s)	80, 278, 306
SspI	AATATT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	285
TaqI	TCGA	1 cut(s)	331
TasI	AATT	3 cut(s)	80, 278, 306
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	278, 344
Van91I	CCANNNNNTGG	1 cut(s)	456
XceI	RCATGY	2 cut(s)	338, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.