Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Forward (+)

69561641 .. 69564272

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0570000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGGAACCGATTTTCATTTCTCTCTACCTCTCCTTGTTTCTCCACATCCTCACTCTCCTAGAGGCCGGTCAGTCGCCACCTATATACACTCCGGCGGATGATATCACCCTCGACTGTGGCAATTTGGGGCAACACTCGAATAGCTATGACCCCAGGATTTGGAGTGGAGACATCAACTCAACATTTTCCCCCAAACAAGATGGTGACAGTAACGCCACATCCCAATTCAGAAAAGCACCTCCGTCGTTATCACAATCCGCCAGCCAAGTCCCTTACACCACTGCCCGCCTTTCTTACTCGAAATTCACTTACAGAATTCCTCTTTCTCCCGGGAAAAAGTTCATCCGCTTGCATTTCAACCCGGCTTCATACCCAGACTTCCACATCTCCAACTCCCTCTTCTCTGTCACAGCTAGCCACTACATCCTCCTCAAAGACTTCAGAGCTTACATCACTGCCGACGATGCTTACAGTGAGATGCCGCTCATGAGAGAATTCTGCGTCAACATACAGACAGGACATAGCTTGAACATCACATTCAGTCCCAGCAAAGATGCATACGCTTTCATCAACGGGATTGAAATCGTGTCTATGCCCACCAATATTTACACCACTTCAGTTCTTTCCATCGGCAGTGATAGCCCTTATTCATTCGAAAGCAGAATAGCTCTGGACATGGTGTACCGAATCAACATAGGAGGAAAGCCAATCAACACTACTGAAGACACCGGAATGTACCGGAAATGGGACGCTGCCGACGACATGTATTTGGATGGTTTTAGTAAAAAATACAGCGTGCTAGCACAGAACAATACAGTTGAGCTCAATTTTGTCGAAACTCCAGAGTACTCTGCTCCAAAAGAAGTTTACAATACAGGTCGGTCCCTGTGGATGAACAATACTATCAACAAGAGTTACAATCTCACTTGGTCATTTCCTGTAGACTCTAACTTCTCCTACCTGGTTAGATTGCATTTTTGTGAGTTTGAGTCTGACGTTACCAAGAGCGGAGAGAGGACATTTGTAATTTACCTAGCCAATCAAACTGCTGAACAAGGAGCAGACGTAATTCTATGGAGTGGTGGAAATGGGATACCAACACTCAGAGACTACACCTTGCTCATGCTTGGCCCTGGAAGCCAGAAAAAAGTTAATCTCTCTATTGCATTGCAAGCATCCCGAGTAGATGGGTTGACCGAATACAAGGATGCAATGTTGAATGGACTCGAAATCTTCAAGCTAATTGACCCAAAAGGTGATCTCAAAACCAACCCAGACCCAACAATGACACCGCATAGTAAATCGTTTCCTGTGCTTGCCCTCGTTGCTGGTGTAGTTTCCAGCATACTTGTGTTCTCTGTCCTCGGATACTTGGTTTTCAGGAAAAGATGGAAAGTCAAGGACCCTGACTACAGGATAAGGAAGTTCACGACCACCCCCGGGTCATCATATCCGTGTCGCTACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAAAACTTCAGTGATGCTTTTATCATTGGAGGTGGAGGTTTTGGTAATGTATATAAAGGATGCATTGATGGTGGTGCCACTCCAGTTGCAATCAAACGGCTGAAACCAGAATCATCCCAAGGTGTCCGTGAGTTTGAGACTGAAATTGAGATGCTCTCCCAACTCCGTCATCGCCATTTGGTTTCACTCATTGGATGTTGTACTGATAAAGGAGAGATGATCTTAGTGTATGATTACATGGCACAAGGGACCCTCCGTGACCATCTCTACCACACTAATACTCCACCTCTTCTTTGGGAACAACGGCTTCAGATTTGTATTGGTGCAGCTAGAGGATTGCAGTACCTCCATAGTGGTGTGAAGGGCACCATCATTCACCGAGATGTGAAGAGCACAAACATCTTATTGGATGACAACTGGGTGGCCAAGGTTTCAGATTTCGGGCTGTCCAAAGGCACAACAAACATGGCCAAAACCCACATCAGCACGATTGTGAAAGGCAGTTTCGGGTATCTGGATCCAGAATACTACCGACGACAACATCTGACAGAGAAGTCAGACGTCTACTCATTTGGTGTAGTTCTGTGCGAGGTATTATGTGCAAGGCCAGCAGTGATACATACAGAAGAGCTGAGGCAAGCCAGCCTGGCTGAGTGGGCCAAGAGCTGTCATCAGAACGGAGAACTTGATCAAATCATTGATCCAAGTTTGAGAGGTAAGATTGCAGCCGGGTGCTTGAATATATTCTCTGATGTAGCTATCAGTTGCATGCATGATGATGGGACCAAACGGCCATCCATGAATGATGTTGTAAGAGGGCTTGAGCTTGCTTTGGACCTTCAACCGAGCGCAGAGGGGAACATCAACTGCACTGAAAGGACTGGTAAAACTGAAACAAACAGTAGTGAGCAAAGTTGTGCAAACAACAATTCCATTATATGCATATCTGGGACAATCTTTTCTGAGATCAACAACCCAAGTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

827

Amino Acids

91.96

Weight (kDa)

6.28

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	38 - 413	3.3e-28	Malectin-like domain
Malectin	PF11721	227 - 364	3.5e-08	Malectin domain
Pkinase	PF00069	506 - 769	7.5e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	507 - 771	1.4e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2047
AatII	GACGTC	1 cut(s)	2058
AccB1I	GGYRCC	2 cut(s)	1568, 1859
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	2 cut(s)	484, 1008
AccI	GTMKAC	2 cut(s)	942, 2058
AciI	CCGC	8 cut(s)	95, 258, 286, 346, 482, 1008, 1292, 1488
AclWI	GGATC	3 cut(s)	2006, 2019, 2189
AcoI	YGGCCR	3 cut(s)	1917, 1962, 2285
AcsI	RAATTY	3 cut(s)	302, 315, 494
AcuI	CTGAAG	5 cut(s)	424, 600, 741, 1486, 1787
AcyI	GRCGYC	1 cut(s)	2055
AfaI	GTAC	5 cut(s)	683, 737, 848, 1696, 1838
AfiI	CCNNNNNNNGG	3 cut(s)	159, 745, 1440
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	7 cut(s)	358, 529, 581, 1219, 1237, 2233, 2336
AjnI	CCWGG	4 cut(s)	152, 960, 1132, 2139
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AleI	CACNNNNGTG	1 cut(s)	1985
Alw21I	GWGCWC	2 cut(s)	825, 1889
Alw26I	GTCTC	3 cut(s)	162, 1101, 1625
AlwI	GGATC	3 cut(s)	2006, 2019, 2189
Ama87I	CYCGRG	3 cut(s)	329, 1179, 1439
AoxI	GGCC	7 cut(s)	63, 1129, 1917, 1962, 2099, 2151, 2285
ApeKI	GCWGC	3 cut(s)	752, 1820, 2219
ApoI	RAATTY	3 cut(s)	302, 315, 494
Asp700I	GAANNNNTTC	2 cut(s)	338, 2237
AspLEI	GCGC	1 cut(s)	2345
AspS9I	GGNCC	7 cut(s)	882, 1130, 1402, 1743, 2151, 2277, 2329
AsuC2I	CCSGG	6 cut(s)	330, 331, 362, 1440, 1441, 2224
AsuHPI	GGTGA	4 cut(s)	97, 215, 1268, 1862
AsuII	TTCGAA	1 cut(s)	654
AsuNHI	GCTAGC	2 cut(s)	413, 799
AvaI	CYCGRG	3 cut(s)	329, 1179, 1439
AvaII	GGWCC	5 cut(s)	882, 1402, 1743, 2277, 2329
BaeGI	GKGCMC	1 cut(s)	1862
BalI	TGGCCA	2 cut(s)	1919, 1964
BamHI	GGATCC	1 cut(s)	2011
BanI	GGYRCC	2 cut(s)	1568, 1859
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	2 cut(s)	825, 1889
BbvCI	CCTCAGC	1 cut(s)	2126
BbvI	GCAGC	3 cut(s)	739, 1832, 2231
BceAI	ACGGC	3 cut(s)	1607, 1814, 2300
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	4 cut(s)	154, 962, 1134, 2141
BciVI	GTATCC	2 cut(s)	1086, 1361
BclI	TGATCA	1 cut(s)	2182
BcnI	CCSGG	6 cut(s)	330, 331, 362, 1440, 1441, 2224
BcoDI	GTCTC	3 cut(s)	162, 1101, 1625
BfaI	CTAG	5 cut(s)	59, 414, 800, 1034, 1824
BfmI	CTRYAG	2 cut(s)	939, 1411
BfuI	GTATCC	2 cut(s)	1086, 1361
BglI	GCCNNNNNGGC	1 cut(s)	2141
BisI	GCNGC	5 cut(s)	482, 753, 1488, 1821, 2220
BlsI	GCNGC	5 cut(s)	483, 754, 1489, 1822, 2221
BmcAI	AGTACT	1 cut(s)	848
Bme18I	GGWCC	5 cut(s)	882, 1402, 1743, 2277, 2329
BmeT110I	CYCGRG	3 cut(s)	329, 1179, 1439
BmgT120I	GGNCC	7 cut(s)	882, 1130, 1402, 1743, 2151, 2277, 2329
BmiI	GGNNCC	9 cut(s)	6, 884, 1404, 1570, 1744, 1745, 1861, 2013, 2278
BmrI	ACTGGG	1 cut(s)	1921
BmsI	GCATC	8 cut(s)	454, 468, 544, 1184, 1198, 1498, 1544, 1635
BmtI	GCTAGC	2 cut(s)	417, 803
BmuI	ACTGGG	1 cut(s)	1921
BpiI	GAAGAC	1 cut(s)	729
BplI	GAGNNNNNCTC	2 cut(s)	1634, 1666
BpmI	CTGGAG	2 cut(s)	825, 1560
Bpu10I	CCTNAGC	1 cut(s)	2126
Bpu14I	TTCGAA	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	2336
BpuMI	CCSGG	6 cut(s)	330, 331, 362, 1440, 1441, 2224
BsaBI	GATNNNNATC	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	2055
BsaJI	CCNNGG	8 cut(s)	152, 329, 1132, 1363, 1438, 1439, 1612, 1920
BsaWI	WCCGGW	2 cut(s)	728, 738
BsaXI	ACNNNNNCTCC	4 cut(s)	1050, 1080, 1759, 1789
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 745, 1440
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	4 cut(s)	1476, 1577, 1916, 2380
Bse3DI	GCAATG	2 cut(s)	1166, 1218
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	4 cut(s)	154, 962, 1134, 2141
BseDI	CCNNGG	8 cut(s)	152, 329, 1132, 1363, 1438, 1439, 1612, 1920
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	3 cut(s)	159, 745, 1440
BseMI	GCAATG	2 cut(s)	1166, 1218
BseMII	CTCAG	4 cut(s)	1117, 2117, 2136, 2448
BseNI	ACTGG	4 cut(s)	1476, 1577, 1916, 2380
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	1862
BseXI	GCAGC	3 cut(s)	739, 1832, 2231
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	2 cut(s)	1839, 2347
BshFI	GGCC	7 cut(s)	65, 1131, 1919, 1964, 2101, 2153, 2287
BshNI	GGYRCC	2 cut(s)	1568, 1859
BsiHKAI	GWGCWC	2 cut(s)	825, 1889
BsiHKCI	CYCGRG	3 cut(s)	329, 1179, 1439
BsiSI	CCGG	8 cut(s)	66, 92, 330, 362, 729, 739, 1440, 2223
BslFI	GGGAC	7 cut(s)	254, 528, 761, 868, 1756, 2290, 2458
BslI	CCNNNNNNNGG	3 cut(s)	159, 745, 1440
BsmAI	GTCTC	3 cut(s)	162, 1101, 1625
BsmFI	GGGAC	7 cut(s)	254, 528, 761, 868, 1756, 2290, 2458
BsnI	GGCC	7 cut(s)	65, 1131, 1919, 1964, 2101, 2153, 2287
BsoBI	CYCGRG	3 cut(s)	329, 1179, 1439
Bsp119I	TTCGAA	1 cut(s)	654
Bsp1286I	GDGCHC	3 cut(s)	825, 1862, 1889
Bsp143I	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
BspACI	CCGC	8 cut(s)	95, 258, 286, 346, 482, 1008, 1292, 1488
BspANI	GGCC	7 cut(s)	65, 1131, 1919, 1964, 2101, 2153, 2287
BspCNI	CTCAG	4 cut(s)	1116, 2118, 2137, 2449
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	9 cut(s)	6, 884, 1404, 1570, 1744, 1745, 1861, 2013, 2278
BspOI	GCTAGC	2 cut(s)	417, 803
BspPI	GGATC	3 cut(s)	2006, 2019, 2189
BspQI	GCTCTTC	2 cut(s)	1877, 2115
BspT104I	TTCGAA	1 cut(s)	654
BspT107I	GGYRCC	2 cut(s)	1568, 1859
BsrBI	CCGCTC	2 cut(s)	484, 1008
BsrDI	GCAATG	2 cut(s)	1166, 1218
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	1476, 1577, 1916, 2380
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	8 cut(s)	152, 329, 1132, 1363, 1438, 1439, 1612, 1920
BssMI	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
BssNI	GRCGYC	1 cut(s)	2055
BssT1I	CCWWGG	2 cut(s)	1612, 1920
Bst2UI	CCWGG	4 cut(s)	154, 962, 1134, 2141
Bst4CI	ACNGT	5 cut(s)	116, 209, 473, 817, 2396
Bst6I	CTCTTC	4 cut(s)	404, 1788, 1877, 2115
BstACI	GRCGYC	1 cut(s)	2055
BstBI	TTCGAA	1 cut(s)	654
BstDEI	CTNAG	5 cut(s)	1103, 1717, 2126, 2145, 2457
BstHHI	GCGC	1 cut(s)	2345
BstKTI	GATC	7 cut(s)	1261, 1482, 1716, 2014, 2185, 2197, 2463
BstMAI	GTCTC	3 cut(s)	162, 1101, 1625
BstMBI	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
BstMWI	GCNNNNNNNGC	8 cut(s)	464, 639, 1137, 1172, 1325, 2102, 2141, 2150
BstNI	CCWGG	4 cut(s)	154, 962, 1134, 2141
BstNSI	RCATGY	2 cut(s)	766, 2266
BstSFI	CTRYAG	2 cut(s)	939, 1411
BstSLI	GKGCMC	1 cut(s)	1862
BstV1I	GCAGC	3 cut(s)	739, 1832, 2231
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	2011
BstYI	RGATCY	1 cut(s)	2011
BsuI	GTATCC	2 cut(s)	1086, 1361
BsuRI	GGCC	7 cut(s)	65, 1131, 1919, 1964, 2101, 2153, 2287
BtgZI	GCGATG	1 cut(s)	1649
BtsI	GCAGTG	4 cut(s)	279, 453, 640, 2112
BtsIMutI	CAGTG	8 cut(s)	279, 453, 478, 640, 1469, 1510, 2112, 2364
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	2345
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	7 cut(s)	882, 1130, 1402, 1743, 2151, 2277, 2329
Cfr9I	CCCGGG	2 cut(s)	329, 1439
CseI	GACGC	2 cut(s)	490, 758
CsiI	ACCWGGT	1 cut(s)	960
Csp6I	GTAC	5 cut(s)	682, 736, 847, 1695, 1837
CspCI	CAANNNNNGTGG	3 cut(s)	1561, 1596, 2455
CviAII	CATG	9 cut(s)	487, 676, 763, 1123, 1732, 1960, 2263, 2267, 2293
CviQI	GTAC	5 cut(s)	682, 736, 847, 1695, 1837
DdeI	CTNAG	5 cut(s)	1103, 1717, 2126, 2145, 2457
DpnI	GATC	7 cut(s)	1260, 1481, 1715, 2013, 2184, 2196, 2462
DpnII	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
DrdI	GACNNNNNNGTC	1 cut(s)	2047
DseDI	GACNNNNNNGTC	1 cut(s)	2047
EaeI	YGGCCR	3 cut(s)	1917, 1962, 2285
Eam1104I	CTCTTC	4 cut(s)	404, 1788, 1877, 2115
EarI	CTCTTC	4 cut(s)	404, 1788, 1877, 2115
EciI	GGCGGA	2 cut(s)	110, 247
Ecl136II	GAGCTC	1 cut(s)	823
Eco130I	CCWWGG	2 cut(s)	1612, 1920
Eco24I	GRGCYC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	5 cut(s)	882, 1402, 1743, 2277, 2329
Eco53kI	GAGCTC	1 cut(s)	823
Eco57I	CTGAAG	5 cut(s)	424, 600, 741, 1486, 1787
Eco88I	CYCGRG	3 cut(s)	329, 1179, 1439
EcoICRI	GAGCTC	1 cut(s)	823
EcoO109I	RGGNCCY	2 cut(s)	1402, 1743
EcoRI	GAATTC	2 cut(s)	315, 494
EcoRII	CCWGG	4 cut(s)	152, 960, 1132, 2139
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	1612, 1920
EcoT22I	ATGCAT	4 cut(s)	559, 1559, 2268, 2438
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	2 cut(s)	1612, 1920
FaeI	CATG	9 cut(s)	490, 679, 766, 1126, 1735, 1963, 2266, 2270, 2296
FaqI	GGGAC	7 cut(s)	254, 528, 761, 868, 1756, 2290, 2458
FatI	CATG	9 cut(s)	486, 675, 762, 1122, 1731, 1959, 2262, 2266, 2292
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	2182
FblI	GTMKAC	2 cut(s)	942, 2058
Fnu4HI	GCNGC	5 cut(s)	482, 753, 1488, 1821, 2220
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	5 cut(s)	482, 753, 1488, 1821, 2220
FspBI	CTAG	5 cut(s)	59, 414, 800, 1034, 1824
GlaI	GCGC	1 cut(s)	2344
GluI	GCNGC	5 cut(s)	482, 753, 1488, 1821, 2220
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	825, 1560
HaeIII	GGCC	7 cut(s)	65, 1131, 1919, 1964, 2101, 2153, 2287
HapII	CCGG	8 cut(s)	66, 92, 330, 362, 729, 739, 1440, 2223
HgaI	GACGC	2 cut(s)	490, 758
HhaI	GCGC	1 cut(s)	2345
Hin1I	GRCGYC	1 cut(s)	2055
Hin1II	CATG	9 cut(s)	490, 679, 766, 1126, 1735, 1963, 2266, 2270, 2296
Hin6I	GCGC	1 cut(s)	2343
HinP1I	GCGC	1 cut(s)	2343
HincII	GTYRAC	2 cut(s)	505, 1194
HindII	GTYRAC	2 cut(s)	505, 1194
HinfI	GANTC	5 cut(s)	687, 944, 989, 1224, 1604
HpaII	CCGG	8 cut(s)	66, 92, 330, 362, 729, 739, 1440, 2223
HphI	GGTGA	4 cut(s)	97, 215, 1268, 1862
Hpy166II	GTNNAC	7 cut(s)	505, 682, 868, 943, 1194, 1428, 2059
Hpy188III	TCNNGA	8 cut(s)	487, 671, 842, 1179, 1381, 1429, 2009, 2015
Hpy8I	GTNNAC	7 cut(s)	505, 682, 868, 943, 1194, 1428, 2059
Hpy99I	CGWCG	4 cut(s)	247, 464, 761, 2031
HpyAV	CCTTC	2 cut(s)	1849, 2342
HpyCH4III	ACNGT	5 cut(s)	116, 209, 473, 817, 2396
HpyCH4IV	ACGT	3 cut(s)	996, 1065, 2055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	464, 639, 1137, 1172, 1325, 2102, 2141, 2150
HpyF3I	CTNAG	5 cut(s)	1103, 1717, 2126, 2145, 2457
HpySE526I	ACGT	3 cut(s)	996, 1065, 2055
Hsp92I	GRCGYC	1 cut(s)	2055
Hsp92II	CATG	9 cut(s)	490, 679, 766, 1126, 1735, 1963, 2266, 2270, 2296
HspAI	GCGC	1 cut(s)	2343
KflI	GGGWCCC	1 cut(s)	1743
Ksp22I	TGATCA	1 cut(s)	2182
Kzo9I	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
LguI	GCTCTTC	2 cut(s)	1877, 2115
LmnI	GCTCC	2 cut(s)	859, 1058
Lsp1109I	GCAGC	3 cut(s)	739, 1832, 2231
LweI	GCATC	8 cut(s)	454, 468, 544, 1184, 1198, 1498, 1544, 1635
MabI	ACCWGGT	1 cut(s)	960
MaeI	CTAG	5 cut(s)	59, 414, 800, 1034, 1824
MaeII	ACGT	3 cut(s)	996, 1065, 2055
MaeIII	GTNAC	6 cut(s)	203, 209, 406, 914, 997, 1751
MalI	GATC	7 cut(s)	1260, 1481, 1715, 2013, 2184, 2196, 2462
MbiI	CCGCTC	2 cut(s)	484, 1008
MboI	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
MboII	GAAGA	6 cut(s)	391, 734, 1225, 1775, 1894, 2132
MflI	RGATCY	1 cut(s)	2011
MhlI	GDGCHC	3 cut(s)	825, 1862, 1889
MlsI	TGGCCA	2 cut(s)	1919, 1964
MluNI	TGGCCA	2 cut(s)	1919, 1964
MlyI	GAGTC	3 cut(s)	938, 998, 1218
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	2 cut(s)	1919, 1964
Mph1103I	ATGCAT	4 cut(s)	559, 1559, 2268, 2438
MroXI	GAANNNNTTC	2 cut(s)	338, 2237
MscI	TGGCCA	2 cut(s)	1919, 1964
MseI	TTAA	1 cut(s)	1152
MslI	CAYNNNNRTG	8 cut(s)	731, 978, 1349, 1453, 1848, 1875, 1985, 2271
Msp20I	TGGCCA	2 cut(s)	1919, 1964
MspI	CCGG	8 cut(s)	66, 92, 330, 362, 729, 739, 1440, 2223
MvaI	CCWGG	4 cut(s)	154, 962, 1134, 2141
MwoI	GCNNNNNNNGC	8 cut(s)	464, 639, 1137, 1172, 1325, 2102, 2141, 2150
NciI	CCSGG	6 cut(s)	330, 331, 362, 1440, 1441, 2224
NdeII	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
NheI	GCTAGC	2 cut(s)	413, 799
NlaIII	CATG	9 cut(s)	490, 679, 766, 1126, 1735, 1963, 2266, 2270, 2296
NlaIV	GGNNCC	9 cut(s)	6, 884, 1404, 1570, 1744, 1745, 1861, 2013, 2278
NmuCI	GTSAC	3 cut(s)	203, 406, 1751
NsiI	ATGCAT	4 cut(s)	559, 1559, 2268, 2438
NspI	RCATGY	2 cut(s)	766, 2266
NspV	TTCGAA	1 cut(s)	654
OliI	CACNNNNGTG	1 cut(s)	1985
PaeI	GCATGC	1 cut(s)	2266
PagI	TCATGA	1 cut(s)	486
PciI	ACATGT	1 cut(s)	762
PciSI	GCTCTTC	2 cut(s)	1877, 2115
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PdmI	GAANNNNTTC	2 cut(s)	338, 2237
PfeI	GAWTC	2 cut(s)	687, 1604
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	483, 754, 1489, 1822, 2221
PleI	GAGTC	3 cut(s)	938, 997, 1218
PpsI	GAGTC	3 cut(s)	938, 997, 1218
PpuMI	RGGWCCY	2 cut(s)	1402, 1743
PscI	ACATGT	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	825
Psp5II	RGGWCCY	2 cut(s)	1402, 1743
Psp6I	CCWGG	4 cut(s)	152, 960, 1132, 2139
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	4 cut(s)	152, 960, 1132, 2139
PspN4I	GGNNCC	9 cut(s)	6, 884, 1404, 1570, 1744, 1745, 1861, 2013, 2278
PspPI	GGNCC	7 cut(s)	882, 1130, 1402, 1743, 2151, 2277, 2329
PspPPI	RGGWCCY	2 cut(s)	1402, 1743
PsuI	RGATCY	1 cut(s)	2011
RsaI	GTAC	5 cut(s)	683, 737, 848, 1696, 1838
RsaNI	GTAC	5 cut(s)	682, 736, 847, 1695, 1837
RseI	CAYNNNNRTG	8 cut(s)	731, 978, 1349, 1453, 1848, 1875, 1985, 2271
SacI	GAGCTC	1 cut(s)	825
SapI	GCTCTTC	2 cut(s)	1877, 2115
SaqAI	TTAA	1 cut(s)	1152
SatI	GCNGC	5 cut(s)	482, 753, 1488, 1821, 2220
Sau3AI	GATC	7 cut(s)	1258, 1479, 1713, 2011, 2182, 2194, 2460
Sau96I	GGNCC	7 cut(s)	882, 1130, 1402, 1743, 2151, 2277, 2329
ScaI	AGTACT	1 cut(s)	848
SchI	GAGTC	3 cut(s)	938, 998, 1218
SduI	GDGCHC	3 cut(s)	825, 1862, 1889
SexAI	ACCWGGT	1 cut(s)	960
SfaNI	GCATC	8 cut(s)	454, 468, 544, 1184, 1198, 1498, 1544, 1635
SfcI	CTRYAG	2 cut(s)	939, 1411
SfuI	TTCGAA	1 cut(s)	654
SinI	GGWCC	5 cut(s)	882, 1402, 1743, 2277, 2329
SmaI	CCCGGG	2 cut(s)	331, 1441
SmiMI	CAYNNNNRTG	8 cut(s)	731, 978, 1349, 1453, 1848, 1875, 1985, 2271
SmlI	CTYRAG	1 cut(s)	2315
SmoI	CTYRAG	1 cut(s)	2315
SphI	GCATGC	1 cut(s)	2266
SsiI	CCGC	8 cut(s)	95, 258, 286, 346, 482, 1008, 1292, 1488
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	5 cut(s)	59, 414, 800, 1034, 1824
SstI	GAGCTC	1 cut(s)	825
StyI	CCWWGG	2 cut(s)	1612, 1920
TaaI	ACNGT	5 cut(s)	116, 209, 473, 817, 2396
TaiI	ACGT	3 cut(s)	999, 1068, 2058
TaqI	TCGA	6 cut(s)	111, 137, 299, 654, 834, 1227
TaqII	GACCGA	2 cut(s)	870, 1211
TatI	WGTACW	2 cut(s)	846, 1694
TauI	GCSGC	2 cut(s)	484, 1490
TfiI	GAWTC	2 cut(s)	687, 1604
Tru1I	TTAA	1 cut(s)	1152
Tru9I	TTAA	1 cut(s)	1152
TscAI	CASTG	8 cut(s)	286, 460, 478, 640, 1476, 1510, 2112, 2371
TseFI	GTSAC	3 cut(s)	203, 406, 1751
TseI	GCWGC	3 cut(s)	752, 1820, 2219
Tsp45I	GTSAC	3 cut(s)	203, 406, 1751
TspDTI	ATGAA	7 cut(s)	4, 331, 357, 556, 639, 908, 2309
TspGWI	ACGGA	6 cut(s)	231, 1443, 1610, 1649, 1739, 2187
TspMI	CCCGGG	2 cut(s)	329, 1439
TspRI	CASTG	8 cut(s)	286, 460, 478, 640, 1476, 1510, 2112, 2371
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	5 cut(s)	882, 1402, 1743, 2277, 2329
XapI	RAATTY	3 cut(s)	302, 315, 494
XceI	RCATGY	2 cut(s)	766, 2266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1785
XmaI	CCCGGG	2 cut(s)	329, 1439
XmiI	GTMKAC	2 cut(s)	942, 2058
XmnI	GAANNNNTTC	2 cut(s)	338, 2237
XspI	CTAG	5 cut(s)	59, 414, 800, 1034, 1824
ZraI	GACGTC	1 cut(s)	2056
ZrmI	AGTACT	1 cut(s)	848
Zsp2I	ATGCAT	4 cut(s)	559, 1559, 2268, 2438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.