Rmu_sc0003154.1_g000026

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003154.1
OG0004636
Physical Location & Seq
Reverse (-)
142500 .. 148248
5749 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
atggagtccaggtcattgggccacgaaattctcatggctactatgcttaatggggctgcaaatatagatggggcattgcttctgacgtctgagcatcttgctgctctgaaaattgtgccacttgttctgggatcaatatatgcaacatatgtattagtgggggttttgttgcggacgctgatacattctgctagggtaagtcctatagagaggcatagagagagagagatggcaaatcaaggtgcaaaaaagcgcaaggaagagaatgctcggcacatggcaaatatccgtctcctgattgtggcctgcaatgtgatgtatgtggtagtaaggatgctcatcttccattctacttttacctggaaaaactgggttgctttgctgctgacatctgtaatttattatattccctatcaacaactcgcccaaatggcaaatccttcttatgctgatgatggcgaacttctagatggcggatttgatatgaccactggtggagtgtgtggctatttacatgacgtaatctacattacaagcttcgtgcaagtcatgtccataatctctggaaaattttggtatacgtatctgctgataccaggttttggagcatacaaatcatttggtttcttcagaggatttatgtcccaaagttcagagggaggcttggaggatgaaaagacacgaaagaagagggaaaagatggaaaagaaggcttcaagagcccagtttgtcaagacaagaaaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

249

Amino Acids

28.17

Weight (kDa)

9.57

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 77 - 238 3e-56 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 602
AccI GTMKAC 1 cut(s) 578
AciI CCGC 2 cut(s) 172, 474
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 2 cut(s) 27, 569
AcuI CTGAAG 1 cut(s) 613
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 301, 602
AgsI TTSAA 1 cut(s) 717
AjnI CCWGG 3 cut(s) 8, 359, 595
AluBI AGCT 1 cut(s) 537
AluI AGCT 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 139
AoxI GGCC 2 cut(s) 19, 303
ApeKI GCWGC 3 cut(s) 56, 101, 382
ApoI RAATTY 2 cut(s) 27, 569
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 724
BbvI GCAGC 3 cut(s) 43, 88, 369
BccI CCATC 5 cut(s) 62, 223, 449, 464, 694
BciT130I CCWGG 3 cut(s) 10, 361, 597
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 2 cut(s) 192, 467
BfmI CTRYAG 1 cut(s) 204
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 3 cut(s) 57, 102, 383
BlsI GCNGC 3 cut(s) 58, 103, 384
Bme1390I CCNGG 3 cut(s) 10, 361, 597
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 10, 361, 597
BmrI ACTGGG 2 cut(s) 379, 718
BmsI GCATC 2 cut(s) 103, 324
BmuI ACTGGG 2 cut(s) 379, 718
BsaAI YACGTR 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 86
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 602
Bse1I ACTGG 3 cut(s) 374, 496, 724
Bse3DI GCAATG 2 cut(s) 74, 316
Bse8I GATNNNNATC 1 cut(s) 338
BseBI CCWGG 3 cut(s) 10, 361, 597
BseGI GGATG 2 cut(s) 339, 676
BseJI GATNNNNATC 1 cut(s) 338
BseLI CCNNNNNNNGG 2 cut(s) 301, 602
BseMI GCAATG 2 cut(s) 74, 316
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 3 cut(s) 374, 496, 724
BseXI GCAGC 3 cut(s) 43, 88, 369
BshFI GGCC 2 cut(s) 21, 305
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 301, 602
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 628
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 21, 305
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 2 cut(s) 172, 474
BspANI GGCC 2 cut(s) 21, 305
BspCNI CTCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 74, 316
BsrI ACTGG 3 cut(s) 374, 496, 724
BssMI GATC 1 cut(s) 131
BssNAI GTATAC 1 cut(s) 579
BssNI GRCGYC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 579
Bst2UI CCWGG 3 cut(s) 10, 361, 597
Bst6I CTCTTC 2 cut(s) 255, 683
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 339, 676
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 2 cut(s) 431, 719
BstNI CCWGG 3 cut(s) 10, 361, 597
BstSCI CCNGG 3 cut(s) 8, 359, 595
BstSFI CTRYAG 1 cut(s) 204
BstSNI TACGTA 1 cut(s) 582
BstV1I GCAGC 3 cut(s) 43, 88, 369
BstXI CCANNNNNNTGG 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 579
BsuRI GGCC 2 cut(s) 21, 305
BtsCI GGATG 2 cut(s) 339, 676
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 595
CviAII CATG 4 cut(s) 34, 277, 515, 550
CviJI RGCY 9 cut(s) 21, 38, 56, 305, 507, 537, 663, 713, 722
CviKI_1 RGCY 9 cut(s) 21, 38, 56, 305, 507, 537, 663, 713, 722
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 255, 683
EarI CTCTTC 2 cut(s) 255, 683
EciI GGCGGA 1 cut(s) 489
Eco105I TACGTA 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 613
EcoRII CCWGG 3 cut(s) 8, 359, 595
EcoT38I GRGCYC 1 cut(s) 724
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 4 cut(s) 37, 280, 518, 553
FaqI GGGAC 1 cut(s) 628
FatI CATG 4 cut(s) 33, 276, 514, 549
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 3 cut(s) 57, 102, 383
FokI GGATG 2 cut(s) 346, 683
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 3 cut(s) 57, 102, 383
FspBI CTAG 2 cut(s) 192, 467
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 57, 102, 383
HaeIII GGCC 2 cut(s) 21, 305
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 37, 280, 518, 553
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 5 cut(s) 84, 91, 108, 632, 655
Hpy188III TCNNGA 5 cut(s) 295, 467, 564, 717, 733
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 2 cut(s) 450, 703
HpyCH4IV ACGT 3 cut(s) 86, 519, 581
HpyCH4V TGCA 5 cut(s) 59, 143, 245, 309, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 719
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 3 cut(s) 86, 519, 581
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 37, 280, 518, 553
HspAI GCGC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 3 cut(s) 43, 88, 369
LweI GCATC 2 cut(s) 103, 324
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 2 cut(s) 192, 467
MaeII ACGT 3 cut(s) 86, 519, 581
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 4 cut(s) 272, 334, 619, 700
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 4 cut(s) 27, 111, 396, 569
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 204, 626, 649, 653, 661, 684
MseI TTAA 1 cut(s) 48
MspR9I CCNGG 3 cut(s) 10, 361, 597
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 3 cut(s) 10, 361, 597
MwoI GCNNNNNNNGC 2 cut(s) 431, 719
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 131
NlaIII CATG 4 cut(s) 37, 280, 518, 553
NmeAIII GCCGAG 1 cut(s) 250
PctI GAATGC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 3 cut(s) 58, 103, 384
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 8, 359, 595
PspGI CCWGG 3 cut(s) 8, 359, 595
PspPI GGNCC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 57, 102, 383
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 10, 361, 597
SduI GDGCHC 1 cut(s) 724
SetI ASST 8 cut(s) 14, 89, 244, 362, 522, 539, 584, 601
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 2 cut(s) 103, 324
SfcI CTRYAG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 582
Sse9I AATT 4 cut(s) 27, 111, 396, 569
SsiI CCGC 2 cut(s) 172, 474
SspMI CTAG 2 cut(s) 192, 467
StyD4I CCNGG 3 cut(s) 8, 359, 595
TaiI ACGT 3 cut(s) 89, 522, 584
TasI AATT 4 cut(s) 27, 111, 396, 569
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 496
TseI GCWGC 3 cut(s) 56, 101, 382
TspDTI ATGAA 1 cut(s) 687
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 602
XapI RAATTY 2 cut(s) 27, 569
XbaI TCTAGA 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 578
XspI CTAG 2 cut(s) 192, 467
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.