Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003332.1

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

135302 .. 138095

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgcagaagtatgtaggtgctgacgtcacatcaatggtgacccttcccgttcttatttttgagccaatgactatgctacagaaaatggcagagttgatggaatactcccatctgttagatctggcagatgaatgtgaggatccatacatgcaattggtatattctgcatctttctttatatctgtttactatgcctttcaacgcacctggaagccattcaaccccattcttggtgagacttacgaaatggttaatcatggtggcattacatttgtagcagaacaggttagtcatcaccctcctatgagtgctgctcatgcagaaaatgagcatttcatatatgacataacttcaaaggtgaaaaccaaatttctagggaactcgattgatatctatccagttggaaggacacgtttgaccctcaagaagtctggtgtagtcttagatttggcacccccgccaacaaaagtcaacaacttaatttttggaaggacatgggttgattcaccaggagatatggttttgaccaatttgaccacaggggataaagttgtgctatattttcaaccatgcggctggtttggagctggtcgctatgaagttgatggatatgtttataattcgaccgaggaacccaagatattgatgactggaaagtggaatgagtcaatgagttatcaaccctgtgacgcagaaggtgaaccacttcctggcactgaattgaaagagtcttggaaagttgctgaagttccagaaaatgacaaattccagtacacatattttgcgcataaaataaacagcttcgacactgctcctaagaagttactggcatcagattctcggttgcgtcctgataggtttgcactggagcaaggtgacatacctaaagctggctttgaaaagagcagtctggaggagaggcagagagctgaaaagaaaaatagagaggaaaagggtcatgagttcactccaagatggtttgacaaaacagatgaaatctgtcccacaacttgggatgacttgcaagtgtaccaatacaatggcaaatacaccgaacaccgggccgcaatagatgactcggacagcgttgaagcaattgacgtcaaatcaatagagttcaacccctggcaatacgagaatttggctgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

383

Amino Acids

43.89

Weight (kDa)

4.95

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	1 - 354	1e-110	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AatII	GACGTC	2 cut(s)	27, 1104
Acc16I	TGCGCA	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	2 cut(s)	710, 1011
AciI	CCGC	3 cut(s)	458, 573, 1065
AclWI	GGATC	2 cut(s)	134, 147
AcsI	RAATTY	3 cut(s)	368, 764, 1138
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	2 cut(s)	24, 1101
AfaI	GTAC	2 cut(s)	773, 1031
AfiI	CCNNNNNNNGG	5 cut(s)	230, 710, 890, 1011, 1059
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	8 cut(s)	200, 220, 354, 566, 724, 899, 1091, 1120
AjnI	CCWGG	4 cut(s)	206, 508, 709, 1124
AluBI	AGCT	4 cut(s)	587, 801, 890, 929
AluI	AGCT	4 cut(s)	587, 801, 890, 929
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	134, 147
AoxI	GGCC	1 cut(s)	1062
ApeKI	GCWGC	2 cut(s)	311, 1145
ApoI	RAATTY	3 cut(s)	368, 764, 1138
Asp700I	GAANNNNTTC	2 cut(s)	215, 705
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	1 cut(s)	1062
AsuC2I	CCSGG	1 cut(s)	1061
AsuHPI	GGTGA	7 cut(s)	49, 245, 287, 370, 498, 710, 887
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	451
BbvI	GCAGC	2 cut(s)	298, 1132
BccI	CCATC	4 cut(s)	91, 117, 599, 969
BciT130I	CCWGG	4 cut(s)	208, 510, 711, 1126
BcnI	CCSGG	1 cut(s)	1061
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	4 cut(s)	312, 574, 1065, 1146
BlsI	GCNGC	4 cut(s)	313, 575, 1066, 1147
Bme1390I	CCNGG	5 cut(s)	208, 510, 711, 1061, 1126
BmgT120I	GGNCC	1 cut(s)	1062
BmiI	GGNNCC	3 cut(s)	141, 453, 633
BmrFI	CCNGG	5 cut(s)	208, 510, 711, 1061, 1126
BmsI	GCATC	2 cut(s)	176, 839
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpmI	CTGGAG	2 cut(s)	887, 932
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	1061
BsaBI	GATNNNNATC	2 cut(s)	389, 393
BsaHI	GRCGYC	2 cut(s)	24, 1101
BsaJI	CCNNGG	2 cut(s)	627, 1124
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	5 cut(s)	230, 710, 890, 1011, 1059
Bse1I	ACTGG	5 cut(s)	398, 655, 769, 831, 870
Bse8I	GATNNNNATC	2 cut(s)	389, 393
BseBI	CCWGG	4 cut(s)	208, 510, 711, 1126
BseDI	CCNNGG	2 cut(s)	627, 1124
BseGI	GGATG	1 cut(s)	1021
BseJI	GATNNNNATC	2 cut(s)	389, 393
BseLI	CCNNNNNNNGG	5 cut(s)	230, 710, 890, 1011, 1059
BseNI	ACTGG	5 cut(s)	398, 655, 769, 831, 870
BseRI	GAGGAG	1 cut(s)	929
BseXI	GCAGC	2 cut(s)	298, 1132
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	1064
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	5 cut(s)	230, 710, 890, 1011, 1059
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	987
BsnI	GGCC	1 cut(s)	1064
Bsp143I	GATC	2 cut(s)	118, 139
BspACI	CCGC	3 cut(s)	458, 573, 1065
BspANI	GGCC	1 cut(s)	1064
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	141, 453, 633
BspPI	GGATC	2 cut(s)	134, 147
BspT107I	GGYRCC	1 cut(s)	451
BsrI	ACTGG	5 cut(s)	398, 655, 769, 831, 870
BssECI	CCNNGG	2 cut(s)	627, 1124
BssMI	GATC	2 cut(s)	118, 139
BssNI	GRCGYC	2 cut(s)	24, 1101
Bst2UI	CCWGG	4 cut(s)	208, 510, 711, 1126
BstACI	GRCGYC	2 cut(s)	24, 1101
BstC8I	GCNNGC	1 cut(s)	892
BstDEI	CTNAG	2 cut(s)	442, 816
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	2 cut(s)	121, 142
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	118, 139
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	4 cut(s)	208, 510, 711, 1126
BstNSI	RCATGY	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	5 cut(s)	206, 508, 709, 1059, 1124
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	298, 1132
BstX2I	RGATCY	2 cut(s)	118, 139
BstXI	CCANNNNNNTGG	2 cut(s)	576, 1040
BstYI	RGATCY	2 cut(s)	118, 139
BsuRI	GGCC	1 cut(s)	1064
BtsCI	GGATG	1 cut(s)	1021
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	714, 807, 863
Cac8I	GCNNGC	1 cut(s)	892
CciI	TCATGA	1 cut(s)	958
CfoI	GCGC	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	1062
CseI	GACGC	2 cut(s)	698, 836
Csp6I	GTAC	2 cut(s)	772, 1030
CviAII	CATG	6 cut(s)	148, 257, 317, 495, 570, 959
CviQI	GTAC	2 cut(s)	772, 1030
DdeI	CTNAG	2 cut(s)	442, 816
DpnI	GATC	2 cut(s)	120, 141
DpnII	GATC	2 cut(s)	118, 139
Eco32I	GATATC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	765
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	4 cut(s)	206, 508, 709, 1124
EcoRV	GATATC	1 cut(s)	391
FaeI	CATG	6 cut(s)	151, 260, 320, 498, 573, 962
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	6 cut(s)	147, 256, 316, 494, 569, 958
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	312, 574, 1065, 1146
FokI	GGATG	1 cut(s)	1028
Fsp4HI	GCNGC	4 cut(s)	312, 574, 1065, 1146
FspBI	CTAG	1 cut(s)	374
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	4 cut(s)	312, 574, 1065, 1146
GsuI	CTGGAG	2 cut(s)	887, 932
HaeIII	GGCC	1 cut(s)	1064
HapII	CCGG	1 cut(s)	1060
HgaI	GACGC	2 cut(s)	698, 836
HhaI	GCGC	1 cut(s)	787
Hin1I	GRCGYC	2 cut(s)	24, 1101
Hin1II	CATG	6 cut(s)	151, 260, 320, 498, 573, 962
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	5 cut(s)	503, 665, 728, 836, 1076
HpaII	CCGG	1 cut(s)	1060
HphI	GGTGA	7 cut(s)	49, 245, 287, 370, 498, 710, 887
Hpy166II	GTNNAC	6 cut(s)	187, 472, 701, 774, 966, 1030
Hpy188I	TCNGA	2 cut(s)	835, 1081
Hpy188III	TCNNGA	5 cut(s)	424, 752, 851, 911, 959
Hpy8I	GTNNAC	6 cut(s)	187, 472, 701, 774, 966, 1030
HpyAV	CCTTC	4 cut(s)	53, 399, 483, 689
HpyCH4IV	ACGT	3 cut(s)	24, 412, 1101
HpyCH4V	TGCA	6 cut(s)	4, 151, 167, 320, 863, 1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	442, 816
HpySE526I	ACGT	3 cut(s)	24, 412, 1101
Hsp92I	GRCGYC	2 cut(s)	24, 1101
Hsp92II	CATG	6 cut(s)	151, 260, 320, 498, 573, 962
HspAI	GCGC	1 cut(s)	785
Kzo9I	GATC	2 cut(s)	118, 139
LmnI	GCTCC	3 cut(s)	584, 817, 868
Lsp1109I	GCAGC	2 cut(s)	298, 1132
LweI	GCATC	2 cut(s)	176, 839
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	3 cut(s)	24, 412, 1101
MaeIII	GTNAC	5 cut(s)	25, 37, 686, 822, 875
MalI	GATC	2 cut(s)	120, 141
MboI	GATC	2 cut(s)	118, 139
MfeI	CAATTG	2 cut(s)	152, 1095
MflI	RGATCY	2 cut(s)	118, 139
MluCI	AATT	9 cut(s)	152, 368, 480, 529, 619, 719, 764, 1095, 1138
MlyI	GAGTC	3 cut(s)	674, 737, 1070
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	130, 309, 431, 622, 907, 912, 940
MroXI	GAANNNNTTC	2 cut(s)	215, 705
MseI	TTAA	2 cut(s)	252, 479
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	1060
MspR9I	CCNGG	5 cut(s)	208, 510, 711, 1061, 1126
MunI	CAATTG	2 cut(s)	152, 1095
MvaI	CCWGG	4 cut(s)	208, 510, 711, 1126
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	1061
NdeII	GATC	2 cut(s)	118, 139
NlaIII	CATG	6 cut(s)	151, 260, 320, 498, 573, 962
NlaIV	GGNNCC	3 cut(s)	141, 453, 633
NmuCI	GTSAC	4 cut(s)	25, 37, 686, 875
NsbI	TGCGCA	1 cut(s)	786
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	1 cut(s)	958
PdmI	GAANNNNTTC	2 cut(s)	215, 705
PfeI	GAWTC	2 cut(s)	503, 836
PflMI	CCANNNNNTGG	2 cut(s)	710, 1011
PkrI	GCNGC	4 cut(s)	313, 575, 1066, 1147
PleI	GAGTC	3 cut(s)	673, 736, 1070
PpsI	GAGTC	3 cut(s)	673, 736, 1070
PsiI	TTATAA	1 cut(s)	618
Psp6I	CCWGG	4 cut(s)	206, 508, 709, 1124
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	4 cut(s)	206, 508, 709, 1124
PspN4I	GGNNCC	3 cut(s)	141, 453, 633
PspPI	GGNCC	1 cut(s)	1062
PsuI	RGATCY	2 cut(s)	118, 139
RsaI	GTAC	2 cut(s)	773, 1031
RsaNI	GTAC	2 cut(s)	772, 1030
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	252, 479
SatI	GCNGC	4 cut(s)	312, 574, 1065, 1146
Sau3AI	GATC	2 cut(s)	118, 139
Sau96I	GGNCC	1 cut(s)	1062
SchI	GAGTC	3 cut(s)	674, 737, 1070
ScrFI	CCNGG	5 cut(s)	208, 510, 711, 1061, 1126
SfaNI	GCATC	2 cut(s)	176, 839
SfcI	CTRYAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	9 cut(s)	152, 368, 480, 529, 619, 719, 764, 1095, 1138
SsiI	CCGC	3 cut(s)	458, 573, 1065
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	5 cut(s)	206, 508, 709, 1059, 1124
TaiI	ACGT	3 cut(s)	27, 415, 1104
TaqI	TCGA	3 cut(s)	383, 623, 804
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	9 cut(s)	152, 368, 480, 529, 619, 719, 764, 1095, 1138
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	2 cut(s)	576, 1067
TfiI	GAWTC	2 cut(s)	503, 836
Tru1I	TTAA	2 cut(s)	252, 479
Tru9I	TTAA	2 cut(s)	252, 479
TscAI	CASTG	3 cut(s)	721, 814, 870
TseFI	GTSAC	4 cut(s)	25, 37, 686, 875
TseI	GCWGC	2 cut(s)	311, 1145
Tsp45I	GTSAC	4 cut(s)	25, 37, 686, 875
TspDTI	ATGAA	4 cut(s)	144, 325, 612, 1008
TspRI	CASTG	3 cut(s)	721, 814, 870
Van91I	CCANNNNNTGG	2 cut(s)	710, 1011
XapI	RAATTY	3 cut(s)	368, 764, 1138
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	2 cut(s)	215, 705
XspI	CTAG	1 cut(s)	374
ZraI	GACGTC	2 cut(s)	25, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.