Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003341.1

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Forward (+)

30877 .. 31596

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgatgactcggaagagaaagtcccaagaagagaattgcatttcaagcacatttttgatggatgagcttaatgaagaccttcttgaaggggtcctgtctaggctaccaatctctgcatttttccgtctttcttcggtttgcaagagatggaaatcagttgcaaactcttcaagtttcaagcttgcctgctcccaaatcccttctcgggatccatggttcttcatggtcgactctcatctcaatcgatccattgtgtttgactctgctgaaaaaaactggaagaaacttaaccatccacctctcctccagacaaactccaactgcaattccatgcctgtttcagcctctggtggctttatctgtttccgaaattcatatggcaacttcgtcgtgtgcaatcctgtgacagggtcctgcaatgaacaacctccactcgatccagccctacaaagcctcacattccatgccattgtgatgagctcatgtcccaacaagcatgaccagtcctcttacaggcttgtagttgtctttggtgagcttccgaagctgtcatttagagtgtacaactcaagcagcggttgctgggaagaagagatcaacttgtgcaagaggttcaatgatgatgataattcaaaggagctagatgattctacagactttgactcgaatgatgacagtgctgtttacttcctcagcaaggctggaaatgtagtggcaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

240

Amino Acids

26.99

Weight (kDa)

5.6

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 60	5.2e-09	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	4 cut(s)	203, 216, 240, 431
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
AgsI	TTSAA	6 cut(s)	45, 86, 171, 178, 616, 633
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	6 cut(s)	67, 181, 480, 538, 547, 640
AluI	AGCT	6 cut(s)	67, 181, 480, 538, 547, 640
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	4 cut(s)	203, 216, 240, 431
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	91, 411
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	91, 411
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	3 cut(s)	52, 141, 300
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BfaI	CTAG	2 cut(s)	99, 641
BfmI	CTRYAG	1 cut(s)	651
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	91, 411
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	91, 411
BmiI	GGNNCC	3 cut(s)	92, 210, 412
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
Bse1I	ACTGG	2 cut(s)	281, 502
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	67, 292
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	706
BseNI	ACTGG	2 cut(s)	281, 502
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	585
BseYI	CCCAGC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	7, 471
BslI	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
BsmFI	GGGAC	2 cut(s)	7, 471
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	208, 245, 436, 594
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	705
BspDI	ATCGAT	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	92, 210, 412
BspPI	GGATC	4 cut(s)	203, 216, 240, 431
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	281, 502
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	208, 245, 436, 594
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	4 cut(s)	8, 24, 172, 585
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	183, 187
BstDEI	CTNAG	1 cut(s)	692
BstDSI	CCRYGG	1 cut(s)	212
BstENI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
BstF5I	GGATG	2 cut(s)	67, 292
BstKTI	GATC	4 cut(s)	211, 248, 439, 597
BstMBI	GATC	4 cut(s)	208, 245, 436, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 544, 579
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	67, 292
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	183, 187
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	91, 411
ClaI	ATCGAT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	6 cut(s)	213, 223, 331, 464, 483, 497
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	4 cut(s)	210, 247, 438, 596
DpnII	GATC	4 cut(s)	208, 245, 436, 594
Eam1104I	CTCTTC	4 cut(s)	8, 24, 172, 585
EarI	CTCTTC	4 cut(s)	8, 24, 172, 585
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	91, 411
Eco53kI	GAGCTC	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	480
EcoNI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
EcoO109I	RGGNCCY	2 cut(s)	91, 411
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
FaiI	YATR	8 cut(s)	214, 224, 332, 376, 378, 465, 484, 498
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	7, 471
FatI	CATG	6 cut(s)	212, 222, 330, 463, 482, 496
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	2 cut(s)	74, 279
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	2 cut(s)	99, 641
GluI	GCNGC	1 cut(s)	574
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	1 cut(s)	290
Hin1II	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	7, 230, 260, 647, 662
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	229, 562, 685
Hpy188I	TCNGA	3 cut(s)	12, 368, 543
Hpy188III	TCNNGA	3 cut(s)	83, 206, 307
Hpy8I	GTNNAC	3 cut(s)	229, 562, 685
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	80, 89, 210
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4V	TGCA	8 cut(s)	39, 116, 141, 161, 324, 396, 417, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 544, 579
HpyF3I	CTNAG	1 cut(s)	692
Hsp92II	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
Kzo9I	GATC	4 cut(s)	208, 245, 436, 594
LmnI	GCTCC	2 cut(s)	194, 637
Lsp1109I	GCAGC	1 cut(s)	585
MaeI	CTAG	2 cut(s)	99, 641
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	210, 247, 438, 596
MboI	GATC	4 cut(s)	208, 245, 436, 594
MboII	GAAGA	9 cut(s)	25, 41, 86, 123, 159, 211, 292, 599, 602
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	4 cut(s)	34, 325, 370, 628
MlyI	GAGTC	3 cut(s)	224, 254, 656
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	309, 314, 355, 438, 464, 517, 603, 701
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	69, 288
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	45, 544, 579
NcoI	CCATGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	208, 245, 436, 594
NlaIII	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
NlaIV	GGNNCC	3 cut(s)	92, 210, 412
NmuCI	GTSAC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	575
PleI	GAGTC	3 cut(s)	224, 254, 656
PpsI	GAGTC	3 cut(s)	224, 254, 656
PpuMI	RGGWCCY	2 cut(s)	91, 411
Psp124BI	GAGCTC	1 cut(s)	482
Psp5II	RGGWCCY	2 cut(s)	91, 411
PspFI	CCCAGC	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	92, 210, 412
PspPI	GGNCC	2 cut(s)	91, 411
PspPPI	RGGWCCY	2 cut(s)	91, 411
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	482
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	69, 288
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	4 cut(s)	208, 245, 436, 594
Sau96I	GGNCC	2 cut(s)	91, 411
SchI	GAGTC	3 cut(s)	224, 254, 656
SduI	GDGCHC	1 cut(s)	482
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	2 cut(s)	91, 411
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	4 cut(s)	34, 325, 370, 628
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	2 cut(s)	99, 641
SstI	GAGCTC	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	677
TaqI	TCGA	4 cut(s)	228, 244, 435, 665
TasI	AATT	4 cut(s)	34, 325, 370, 628
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	2 cut(s)	69, 288
Tru9I	TTAA	2 cut(s)	69, 288
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	573
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	87, 211, 363, 435
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	91, 411
XagI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
XapI	RAATTY	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	99, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.