Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003382.1

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Forward (+)

78227 .. 83857

Gene Structure 5631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggaactggacgctgatggtgttggtctggttcattttgttggtgatggtaattatggcattggtgactctgctgtgaagtttgacaacttcccaagcggcaacttttccgacgacgtgtttatgctagtggatttgcgtgtgctgggattgataccagcgacggtggtaggggcgttggcggtgatgctgctgacggtggagtttgccatgtgggctgggggtttgtgggctaatgcattgatggagaaaattttgatttgccatgagtcggttcggttgcagaggtacccgaagttcatcgatgcactaagagatttggatgacaatctcacaatggccgaggtaaaggggcaattgatcacatggttgacttctcaccctttgcagcaagttttgactgatgatgttgacttcaatatcatgctaaactttttggagttttatgaggctcttcttgcttttgtgaattgtcatttatatcgttccataaatgtgaagtatccaccaattcttgatcctcgattggaagcttttgcagccgaactgtatgcactatcaagatacttcgatgcaagttctcggtcctctgtgttgggttccacttcttcgatctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

206

Amino Acids

22.9

Weight (kDa)

4.47

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	114 - 191	7.8e-23	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	2 cut(s)	99, 182
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	418
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	1 cut(s)	533
AluI	AGCT	1 cut(s)	533
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	3 cut(s)	190, 388, 539
ApoI	RAATTY	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	56, 77, 196, 371
AvaII	GGWCC	1 cut(s)	585
BanI	GGYRCC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	177, 400, 551
BccI	CCATC	3 cut(s)	11, 41, 238
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciVI	GTATCC	1 cut(s)	513
BclI	TGATCA	1 cut(s)	360
BfaI	CTAG	2 cut(s)	128, 619
BfuI	GTATCC	1 cut(s)	513
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	4 cut(s)	100, 191, 389, 540
BlsI	GCNGC	4 cut(s)	101, 192, 390, 541
Bme18I	GGWCC	1 cut(s)	585
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	2 cut(s)	290, 601
BmsI	GCATC	3 cut(s)	177, 295, 562
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	177, 400, 551
BseYI	CCCAGC	2 cut(s)	145, 218
BshFI	GGCC	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	271
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	360, 517, 612
BspACI	CCGC	2 cut(s)	99, 182
BspANI	GGCC	1 cut(s)	341
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	290, 601
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	360, 517, 612
Bst4CI	ACNGT	3 cut(s)	166, 199, 549
Bst6I	CTCTTC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	363, 520, 615
BstMBI	GATC	3 cut(s)	360, 517, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 458, 539
BstV1I	GCAGC	3 cut(s)	177, 400, 551
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	585
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	211, 266, 366, 424
CviJI	RGCY	6 cut(s)	218, 233, 341, 452, 533, 542
CviKI_1	RGCY	6 cut(s)	218, 233, 341, 452, 533, 542
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	3 cut(s)	362, 519, 614
DpnII	GATC	3 cut(s)	360, 517, 612
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	585
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	4 cut(s)	214, 269, 369, 427
FatI	CATG	4 cut(s)	210, 265, 365, 423
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	100, 191, 389, 540
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	100, 191, 389, 540
FspBI	CTAG	2 cut(s)	128, 619
GluI	GCNGC	4 cut(s)	100, 191, 389, 540
GsaI	CCCAGC	2 cut(s)	149, 222
HaeIII	GGCC	1 cut(s)	341
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	214, 269, 369, 427
HincII	GTYRAC	2 cut(s)	372, 412
HindII	GTYRAC	2 cut(s)	372, 412
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	2 cut(s)	68, 269
HphI	GGTGA	4 cut(s)	56, 77, 196, 371
Hpy166II	GTNNAC	2 cut(s)	372, 412
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	515, 561
Hpy8I	GTNNAC	2 cut(s)	372, 412
Hpy99I	CGWCG	3 cut(s)	116, 119, 166
HpyCH4III	ACNGT	3 cut(s)	166, 199, 549
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	7 cut(s)	239, 283, 308, 388, 539, 554, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 458, 539
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	214, 269, 369, 427
KpnI	GGTACC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	360, 517, 612
LguI	GCTCTTC	1 cut(s)	459
LpnPI	CCDG	4 cut(s)	14, 131, 171, 204
Lsp1109I	GCAGC	3 cut(s)	177, 400, 551
LweI	GCATC	3 cut(s)	177, 295, 562
MaeI	CTAG	2 cut(s)	128, 619
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	362, 519, 614
MboI	GATC	3 cut(s)	360, 517, 612
MboII	GAAGA	2 cut(s)	446, 600
MfeI	CAATTG	1 cut(s)	356
MluCI	AATT	5 cut(s)	52, 252, 356, 469, 510
MlyI	GAGTC	2 cut(s)	62, 278
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	279, 337, 442, 531, 598
Mph1103I	ATGCAT	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	215, 458, 539
NdeII	GATC	3 cut(s)	360, 517, 612
NlaIII	CATG	4 cut(s)	214, 269, 369, 427
NlaIV	GGNNCC	2 cut(s)	290, 601
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	459
PkrI	GCNGC	4 cut(s)	101, 192, 390, 541
PleI	GAGTC	2 cut(s)	62, 277
PpsI	GAGTC	2 cut(s)	62, 277
PspFI	CCCAGC	2 cut(s)	145, 218
PspN4I	GGNNCC	2 cut(s)	290, 601
PspPI	GGNCC	1 cut(s)	585
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	459
SatI	GCNGC	4 cut(s)	100, 191, 389, 540
Sau3AI	GATC	3 cut(s)	360, 517, 612
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	2 cut(s)	62, 278
SetI	ASST	4 cut(s)	120, 290, 348, 535
SfaNI	GCATC	3 cut(s)	177, 295, 562
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	5 cut(s)	52, 252, 356, 469, 510
SsiI	CCGC	2 cut(s)	99, 182
SspMI	CTAG	2 cut(s)	128, 619
TaaI	ACNGT	3 cut(s)	166, 199, 549
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	4 cut(s)	303, 523, 570, 611
TaqII	GACCGA	1 cut(s)	573
TasI	AATT	5 cut(s)	52, 252, 356, 469, 510
TauI	GCSGC	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	190, 388, 539
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	23, 289
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	1 cut(s)	252
XspI	CTAG	2 cut(s)	128, 619
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.