Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003382.1

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Reverse (-)

105507 .. 106493

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggatgagaccgccccaacattctcccgtagacttgaagataatgattattttgacctctctgtctttgaaattgacaagtttgaaattccagtgtatggcattttcaactgtgatccagcctccttaagagggtatggtaatgtaaagctgacatgcttgtatatgacatggttgggtgtttggcagagtgacctatgtgtgcttgacatacccagcaaggatttggatctagaagcgattgcgaatgtagattctcttttggaagaagattttgtgaaacagtatccgacgttttttgaggagctgcaacttatgaagaagctgaagatgaaggcgaatcgtgaggctttggagcaatttgggcgcacttgtttgtccaagtactatttaccatacaagttgtggtatcttttgatggcggaccgcataaaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

146

Amino Acids

17.2

Weight (kDa)

4.64

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	28 - 135	2.8e-14	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	3 cut(s)	12, 422, 427
AclWI	GGATC	2 cut(s)	110, 237
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	98, 132
AflII	CTTAAG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	38, 71, 86, 109
AluBI	AGCT	4 cut(s)	151, 307, 325, 438
AluI	AGCT	4 cut(s)	151, 307, 325, 438
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	110, 237
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	2
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 132
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	228
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	98, 132
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	98, 132
BsmAI	GTCTC	1 cut(s)	2
Bso31I	GGTCTC	1 cut(s)	2
Bsp143I	GATC	2 cut(s)	115, 229
BspACI	CCGC	3 cut(s)	12, 422, 427
BspPI	GGATC	2 cut(s)	110, 237
BspTI	CTTAAG	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	2
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	115, 229
Bst4CI	ACNGT	2 cut(s)	113, 285
BstAFI	CTTAAG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	118, 232
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	115, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 435
BstNSI	RCATGY	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	99
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	424
CpoI	CGGWCCG	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	385
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	2 cut(s)	156, 171
CviJI	RGCY	6 cut(s)	122, 151, 307, 325, 350, 438
CviKI_1	RGCY	6 cut(s)	122, 151, 307, 325, 350, 438
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	2 cut(s)	117, 231
DpnII	GATC	2 cut(s)	115, 229
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	347
FaeI	CATG	2 cut(s)	159, 174
FatI	CATG	2 cut(s)	155, 170
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	308
GsaI	CCCAGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	159, 174
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	254, 340
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	233, 344
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	113, 285
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 435
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	159, 174
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	115, 229
LmnI	GCTCC	2 cut(s)	304, 355
LpnPI	CCDG	3 cut(s)	105, 132, 229
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	117, 231
MboI	GATC	2 cut(s)	115, 229
MboII	GAAGA	5 cut(s)	50, 278, 281, 331, 340
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	3 cut(s)	72, 87, 359
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	68, 125, 133, 295, 340
MseI	TTAA	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	364, 435
NdeII	GATC	2 cut(s)	115, 229
NlaIII	CATG	2 cut(s)	159, 174
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	254, 340
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	115, 229
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	386
SetI	ASST	7 cut(s)	60, 153, 198, 296, 309, 327, 440
SinI	GGWCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	72, 87, 359
SsiI	CCGC	3 cut(s)	12, 422, 427
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	113, 285
TaiI	ACGT	1 cut(s)	296
TasI	AATT	3 cut(s)	72, 87, 359
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	254, 340
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	332, 347
TspRI	CASTG	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	98
Vha464I	CTTAAG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 402
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.