Rmu_sc0003458.1_g000015

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003458.1
OG0009324
Physical Location & Seq
Forward (+)
75011 .. 76826
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
atgtatgttggggtaaccataaggagatacagagctattcaggacgttgggaaatttatgatgtatgttgggatcattgcctactaccaactgatgcaagtttgccaggctgaatattttcgtcagttgcttaaacctagtgaccaagcatttgacccaaacaaggcagcacggccctttgcaaatcaagtgggtaataactacatgcatatgcctgtggcatctccttttggtactgttttacctcatgatgcaatgcactacaaacccttccatggtgttgaatttcaaacctctgacatttgcccaaagaatttcataatcttcgaccagactgatcatcgcagtcagattatgttcaatcctgcaattgcccacaaaatttctggtcctgcctttgacatctgtgcagcttacgtgcaagacaatttgggattgattgagggaaataatgagaatagagaaacatcttcatctctgaaggaggattcagatgatattgatgcattgttgagcttggaagatgaagaagagcaagaagaatatgatgaggaagaggtcagtacagcacgaactcatggaaactatgggagttcatactctgattcttgctccagttatggtttgaaaaccaggaatgaagggcagaatttttcacttgaaaaaacttctggcattggtagcagcagcagcagctgcaacagtgaacgaaaacgaaagaaaatgaagaagatggtgagagcactaagagggattgtacctggtgggaatgaaatgaacacggttgctgttatagatgaagctgttcagtacttgaagtctctcaaagtcgagatgcagaagcttggagttgggaatttgaataactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

32.44

Weight (kDa)

5.44

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 234 - 289 1.4e-18 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 6 cut(s) 53, 284, 313, 381, 649, 856
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 4 cut(s) 235, 565, 759, 812
AfiI CCNNNNNNNGG 2 cut(s) 163, 275
AgsI TTSAA 7 cut(s) 284, 290, 361, 628, 662, 817, 862
AjnI CCWGG 3 cut(s) 105, 632, 760
AluBI AGCT 6 cut(s) 35, 413, 516, 696, 803, 844
AluI AGCT 6 cut(s) 35, 413, 516, 696, 803, 844
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 1 cut(s) 825
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 696
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 7 cut(s) 167, 410, 684, 687, 690, 693, 696
ApoI RAATTY 6 cut(s) 53, 284, 313, 381, 649, 856
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 2 cut(s) 117, 804
AspS9I GGNCC 2 cut(s) 174, 389
AsuHPI GGTGA 1 cut(s) 748
AvaII GGWCC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 7 cut(s) 179, 422, 683, 696, 699, 702, 705
BccI CCATC 1 cut(s) 727
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 3 cut(s) 107, 634, 762
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 1 cut(s) 138
BisI GCNGC 7 cut(s) 168, 411, 685, 688, 691, 694, 697
BlsI GCNGC 7 cut(s) 169, 412, 686, 689, 692, 695, 698
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 3 cut(s) 107, 634, 762
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 174, 389
BmrFI CCNGG 3 cut(s) 107, 634, 762
BmsI GCATC 5 cut(s) 84, 230, 241, 493, 825
BpmI CTGGAG 1 cut(s) 598
BsaAI YACGTR 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 275
Bse1I ACTGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 75, 261
BseBI CCWGG 3 cut(s) 107, 634, 762
BseDI CCNNGG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 163, 275
BseMI GCAATG 2 cut(s) 75, 261
BseNI ACTGG 1 cut(s) 615
BseXI GCAGC 7 cut(s) 179, 422, 683, 696, 699, 702, 705
BsgI GTGCAG 1 cut(s) 429
BshFI GGCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 163, 275
BsmAI GTCTC 1 cut(s) 825
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 2 cut(s) 72, 337
Bsp19I CCATGG 1 cut(s) 274
BspANI GGCC 1 cut(s) 175
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 525
BsrDI GCAATG 2 cut(s) 75, 261
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 2 cut(s) 72, 337
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 107, 634, 762
Bst4CI ACNGT 3 cut(s) 238, 704, 784
Bst6I CTCTTC 2 cut(s) 525, 549
BstAPI GCANNNNNTGC 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 418
BstDEI CTNAG 1 cut(s) 746
BstDSI CCRYGG 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 13
BstKTI GATC 2 cut(s) 75, 340
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 2 cut(s) 72, 337
BstMWI GCNNNNNNNGC 4 cut(s) 681, 690, 693, 696
BstNI CCWGG 3 cut(s) 107, 634, 762
BstNSI RCATGY 1 cut(s) 208
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 3 cut(s) 105, 632, 760
BstV1I GCAGC 7 cut(s) 179, 422, 683, 696, 699, 702, 705
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 709
CaiI CAGNNNCTG 1 cut(s) 696
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 174, 389
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 4 cut(s) 234, 564, 758, 811
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 4 cut(s) 205, 248, 275, 578
CviJI RGCY 8 cut(s) 35, 110, 175, 413, 516, 696, 803, 844
CviKI_1 RGCY 8 cut(s) 35, 110, 175, 413, 516, 696, 803, 844
CviQI GTAC 4 cut(s) 234, 564, 758, 811
DdeI CTNAG 1 cut(s) 746
DpnI GATC 2 cut(s) 74, 339
DpnII GATC 2 cut(s) 72, 337
Eam1104I CTCTTC 2 cut(s) 525, 549
EarI CTCTTC 2 cut(s) 525, 549
Eco130I CCWWGG 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 500
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 105, 632, 760
EcoT14I CCWWGG 1 cut(s) 274
EcoT22I ATGCAT 2 cut(s) 210, 508
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 4 cut(s) 208, 251, 278, 581
FatI CATG 4 cut(s) 204, 247, 274, 577
FauNDI CATATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 7 cut(s) 168, 411, 685, 688, 691, 694, 697
Fsp4HI GCNGC 7 cut(s) 168, 411, 685, 688, 691, 694, 697
FspBI CTAG 1 cut(s) 138
GluI GCNGC 7 cut(s) 168, 411, 685, 688, 691, 694, 697
GsuI CTGGAG 1 cut(s) 598
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 4 cut(s) 208, 251, 278, 581
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 2 cut(s) 488, 605
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 5 cut(s) 298, 351, 480, 493, 604
Hpy188III TCNNGA 3 cut(s) 41, 248, 832
Hpy8I GTNNAC 1 cut(s) 707
HpyAV CCTTC 3 cut(s) 280, 475, 635
HpyCH4III ACNGT 3 cut(s) 238, 704, 784
HpyCH4IV ACGT 2 cut(s) 45, 417
HpyF10VI GCNNNNNNNGC 4 cut(s) 681, 690, 693, 696
HpyF3I CTNAG 1 cut(s) 746
HpySE526I ACGT 2 cut(s) 45, 417
Hsp92II CATG 4 cut(s) 208, 251, 278, 581
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 72, 337
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 7 cut(s) 179, 422, 683, 696, 699, 702, 705
LweI GCATC 5 cut(s) 84, 230, 241, 493, 825
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 1 cut(s) 138
MaeII ACGT 2 cut(s) 45, 417
MaeIII GTNAC 2 cut(s) 13, 140
MalI GATC 2 cut(s) 74, 339
MboI GATC 2 cut(s) 72, 337
MboII GAAGA 9 cut(s) 316, 462, 533, 539, 542, 551, 566, 739, 742
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 8 cut(s) 53, 284, 313, 369, 381, 427, 649, 856
MnlI CCTC 7 cut(s) 255, 304, 436, 478, 544, 550, 743
Mph1103I ATGCAT 2 cut(s) 210, 508
MroXI GAANNNNTTC 2 cut(s) 117, 804
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 696
MspR9I CCNGG 3 cut(s) 107, 634, 762
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 3 cut(s) 107, 634, 762
MwoI GCNNNNNNNGC 4 cut(s) 681, 690, 693, 696
NcoI CCATGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 210
NdeII GATC 2 cut(s) 72, 337
NlaIII CATG 4 cut(s) 208, 251, 278, 581
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 2 cut(s) 210, 508
NspI RCATGY 1 cut(s) 208
PagI TCATGA 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 525
PdmI GAANNNNTTC 2 cut(s) 117, 804
PfeI GAWTC 2 cut(s) 488, 605
PkrI GCNGC 7 cut(s) 169, 412, 686, 689, 692, 695, 698
Ppu21I YACGTR 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 105, 632, 760
PspEI GGTNACC 1 cut(s) 13
PspGI CCWGG 3 cut(s) 105, 632, 760
PspPI GGNCC 2 cut(s) 174, 389
PstNI CAGNNNCTG 1 cut(s) 696
PvuII CAGCTG 1 cut(s) 696
RsaI GTAC 4 cut(s) 235, 565, 759, 812
RsaNI GTAC 4 cut(s) 234, 564, 758, 811
RseI CAYNNNNRTG 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 7 cut(s) 168, 411, 685, 688, 691, 694, 697
Sau3AI GATC 2 cut(s) 72, 337
Sau96I GGNCC 2 cut(s) 174, 389
ScaI AGTACT 1 cut(s) 812
ScrFI CCNGG 3 cut(s) 107, 634, 762
SduI GDGCHC 1 cut(s) 745
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 5 cut(s) 84, 230, 241, 493, 825
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 8 cut(s) 53, 284, 313, 369, 381, 427, 649, 856
SspI AATATT 1 cut(s) 116
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 105, 632, 760
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 238, 704, 784
TaiI ACGT 2 cut(s) 48, 420
TaqI TCGA 2 cut(s) 327, 831
TasI AATT 8 cut(s) 53, 284, 313, 369, 381, 427, 649, 856
TatI WGTACW 2 cut(s) 563, 810
TfiI GAWTC 2 cut(s) 488, 605
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 7 cut(s) 167, 410, 684, 687, 690, 693, 696
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 9 cut(s) 307, 462, 540, 585, 654, 740, 786, 791, 813
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 6 cut(s) 53, 284, 313, 381, 649, 856
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmnI GAANNNNTTC 2 cut(s) 117, 804
XspI CTAG 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 812
Zsp2I ATGCAT 2 cut(s) 210, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.