Rmu_sc0003473.1_g000007

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003473.1
OG0013356
Physical Location & Seq
Forward (+)
31502 .. 36939
5438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2463 bp
atgggattattggagggaccttcaaacaacaatgatcaacctaagagaaagagaggacgtcctgttggaagtgtgaacaagctgctatatggaacagcagggaaaggaagaaagaaagatggagactcagaaaaggcaaagagcaaaaagaccaacctgatgctgaggttgttagctgctgatgagcctgaaacaagtactagctctagccctaaggggaaagagacagatcatgcgattacatggacgattgagattttacgaacttcactaaacttcaccaaaaataactttagaggagccatatccatcagtgacattacgttttccggagcagataagcagaaacactttcgcatcaacggcgtggtgctgcttgccggacggaggccaggggtctgtgaagccagtctgccgtcgggtggagtcgccagcgagcggtttgcagctctgtctagaacctgcagttgcaagaaaaagtgcggacgttcctcctccggcctcgatcaagcatcgacggcgtggtgctgcttgccggacggaggccaggggtctgtgaagccagtctgccgtcgggtggagtcgccggcgagcggtttgcagctctgtctagaacctgcagttgcaggtgaggtcgctgcccagaaacctgcaaccccgacctcctctgacctcgatcgctgcccagaagccatctggatgcgtccggcaaaccccgcgccgctgtcacggcctgaaagcgaccgctgcgtctacgtccgcacgtccgtctgtgatccgacttactatagagctctgcatttctcaatggaggagagcgatgatgtcagcttgtctccctccagtggcggcaacttggctcgtaaagtggtggcggtggctgccggagaagctcacactctggcgctgacaggtgatgggtatgtgtattcatgggggagaggcatgtttgggcggctcggaaccggttcggaatccgacgagctctgtccggttcgggtcaaatttaaaccagaaaaggggctcaaatttgtgggagtggctgctggtgcttaccatagtcttgctctggctgatgatgggtccatttggtgttggggttacaacatctgtatccttcagcgattccttgagttgggctctggaacgaggagtgaagtgccactacaggtttgttctgttaaggctggaggaatgatgtcgctagcaatagataatcttggtaccctttggatgtggggcaattgtccactagaaagcagcagcagtgaaggtgggttctctcttgtgagcagtttcactccaaccccagtgtgggatttccatggccacacggttgtgaaggtagcatgcggaaatgagcatgtggtagccctagtcacggctggagaaacgtataaaggtgaagatcttatatgcttctcttggggtagtaacaatcacgggcagttaggcctcggggataaagagaaccggaatcgtcctgaaatagtagaagattttaacgaggactccatatttgcggtttatgaagtagcatgtggggcttttcacacggctttgcttacccacaagaaaagaccaagtgagacattagaaagcatgtgctggacgtttggccttggagagaatgggcaacttgggcatggaaccacccaaagtgcctcatctcctgaaactgtgaaagaattgccacaatatgtgtatctgatctctgttgactgtggcttattccacactagtattgtttcatctgcaggagatgtgtggtcatgggggatggagaagggtctcggtctatgcccagatgctagttttactgggacagatgcaggggatgccatttctcccttacagattctgtgtaacggatccaatgggtctaaatttcaggagccggtccaagttgtatgtggtgctgcccatactgttcttgtagcaaatgatggatataagctttggtcttgggggagaggaagaagtggggttctcggaaatggcaagacaaccgactgtttttctcccacagttgtgttgtggcctccacttacagaggatttcaagcaagaagaactaaatgctgttggggagggagacagaattgcggaagagaattctaaaggagtcaccaaaacagaaaaagccttgtcttcagcaatagaagaaacgaaacttcttcaatcaaaactcgcagtgatggaacgatatgctggcatacttcatggttcaatatttggaaaacccttggaagagcaggatattccaatctccttgcagaactcaggtattcatgacattggaaaggaatgggacagaatgctagagtcagcagatcctgcgaagctcgtaaggttggaaaagttctatcaaaaaatgcttgaaggtgttaaagaaaagctgttgaagaaaaggattcaggagctagttaaagagtgtctcagttctactataaacaaagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

820

Amino Acids

88.35

Weight (kDa)

6.39

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 287 - 597 1.5e-60 RCC1-like domain
RCC1_2 PF13540 290 - 315 3.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 306 - 357 3.9e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 345 - 369 3.7e-08 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 387 - 683 1.1e-45 RCC1-like domain
RCC1_2 PF13540 446 - 483 2.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 473 - 522 3.5e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 536 - 582 8.4e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11580 AT5G11580
fragaria_vesca FvH4_2g35490
malus_domestica MD15G1093100.v1.1
prunus_persica Prupe.1G447900_v2.0.a1
pyrus_communis pycom08g09410
rosa_chinensis RchiOBHm_Chr6g0306311 RchiOBHm_Chr6g0306371
rosa_laevigata RLG00000010803
rosa_multiflora Rmu_sc0003473.1_g000007
rosa_roxburghii Rroxscaffold_7G00161880
rosa_rugosa Rorug06G0348600 Rorug06G0348700 Rorug06G0352100
rosa_samantha Rh6AG461100 Rh6DG461900 Rh6DG465400
rosa_wichuraiana Rw6G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 617
AasI GACNNNNNNGTC 1 cut(s) 749
AatII GACGTC 1 cut(s) 61
Acc36I ACCTGC 4 cut(s) 470, 617, 625, 658
Acc65I GGTACC 1 cut(s) 1223
AccB1I GGYRCC 1 cut(s) 1223
AccBSI CCGCTC 2 cut(s) 439, 594
AccI GTMKAC 1 cut(s) 753
AccII CGCG 1 cut(s) 719
AccIII TCCGGA 1 cut(s) 329
AclWI GGATC 4 cut(s) 770, 1866, 1879, 2327
AcoI YGGCCR 1 cut(s) 1327
AcsI RAATTY 4 cut(s) 1004, 1028, 1886, 2113
AcuI CTGAAG 2 cut(s) 1103, 2136
AcyI GRCGYC 1 cut(s) 58
AfaI GTAC 2 cut(s) 199, 1225
AgeI ACCGGT 1 cut(s) 965
AgsI TTSAA 6 cut(s) 24, 2062, 2180, 2229, 2381, 2404
AhlI ACTAGT 1 cut(s) 1739
AjiI CACGTC 1 cut(s) 765
AjnI CCWGG 2 cut(s) 391, 546
AleI CACNNNNGTG 2 cut(s) 1337, 2030
Alw21I GWGCWC 2 cut(s) 796, 987
Alw26I GTCTC 7 cut(s) 117, 218, 840, 1583, 1796, 2088, 2441
AlwI GGATC 4 cut(s) 770, 1866, 1879, 2327
AlwNI CAGNNNCTG 2 cut(s) 1861, 2336
Ama87I CYCGRG 1 cut(s) 1457
Aor13HI TCCGGA 1 cut(s) 329
AoxI GGCC 8 cut(s) 389, 499, 544, 731, 1327, 1453, 1618, 2039
ApoI RAATTY 4 cut(s) 1004, 1028, 1886, 2113
ArsI GACNNNNNNTTYG 2 cut(s) 1502, 1534
AsiGI ACCGGT 1 cut(s) 965
Asp700I GAANNNNTTC 1 cut(s) 967
Asp718I GGTACC 1 cut(s) 1223
AspLEI GCGC 2 cut(s) 721, 907
AspS9I GGNCC 3 cut(s) 17, 1083, 1900
AsuHPI GGTGA 5 cut(s) 271, 641, 926, 1415, 2119
AsuNHI GCTAGC 1 cut(s) 1204
AvaI CYCGRG 1 cut(s) 1457
AvaII GGWCC 3 cut(s) 17, 1083, 1900
AxyI CCTNAGG 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 1096, 1129
BalI TGGCCA 1 cut(s) 1329
BamHI GGATCC 1 cut(s) 1871
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 4 cut(s) 796, 987, 1026, 1142
BarI GAAGNNNNNNTAC 2 cut(s) 1149, 1181
BbsI GAAGAC 1 cut(s) 2142
Bbv12I GWGCWC 2 cut(s) 796, 987
BbvCI CCTCAGC 1 cut(s) 164
BccI CCATC 8 cut(s) 113, 317, 701, 911, 1073, 1774, 1940, 2191
BceAI ACGGC 7 cut(s) 379, 400, 534, 555, 746, 1398, 1572
BcgI CGANNNNNNTGC 4 cut(s) 425, 459, 580, 614
BciT130I CCWGG 2 cut(s) 393, 548
BciVI GTATCC 1 cut(s) 1124
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 7 cut(s) 117, 218, 840, 1583, 1796, 2088, 2441
BcuI ACTAGT 1 cut(s) 1739
BfmI CTRYAG 5 cut(s) 463, 618, 787, 1166, 1755
BfoI RGCGCY 1 cut(s) 908
BfuAI ACCTGC 4 cut(s) 470, 617, 625, 658
BfuI GTATCC 1 cut(s) 1124
BglII AGATCT 1 cut(s) 1408
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 393, 548
Bme18I GGWCC 3 cut(s) 17, 1083, 1900
BmeT110I CYCGRG 1 cut(s) 1457
BmgBI CACGTC 1 cut(s) 765
BmgT120I GGNCC 3 cut(s) 17, 1083, 1900
BmiI GGNNCC 8 cut(s) 18, 301, 964, 1084, 1225, 1651, 1873, 1896
BmrFI CCNGG 2 cut(s) 393, 548
BmrI ACTGGG 2 cut(s) 1304, 1830
BmsI GCATC 7 cut(s) 150, 366, 521, 690, 1798, 1819, 1828
BmtI GCTAGC 1 cut(s) 1208
BmuI ACTGGG 2 cut(s) 1304, 1830
BpiI GAAGAC 1 cut(s) 2142
BplI GAGNNNNNCTC 2 cut(s) 1124, 1156
BpmI CTGGAG 3 cut(s) 826, 1209, 1407
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 1151
BsaHI GRCGYC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 1796
BsaJI CCNNGG 6 cut(s) 392, 547, 1324, 1456, 1621, 2244
BsaWI WCCGGW 4 cut(s) 329, 965, 991, 1473
BsaXI ACNNNNNCTCC 2 cut(s) 1496, 1526
Bse118I RCCGGY 3 cut(s) 586, 965, 1897
Bse1I ACTGG 5 cut(s) 408, 563, 843, 1310, 1825
Bse21I CCTNAGG 1 cut(s) 213
BseAI TCCGGA 1 cut(s) 329
BseBI CCWGG 2 cut(s) 393, 548
BseDI CCNNGG 6 cut(s) 392, 547, 1324, 1456, 1621, 2244
BseGI GGATG 4 cut(s) 705, 1239, 1785, 1843
BseMII CTCAG 4 cut(s) 141, 155, 2295, 2452
BseNI ACTGG 5 cut(s) 408, 563, 843, 1310, 1825
BseRI GAGGAG 5 cut(s) 312, 484, 655, 827, 1165
Bsh1236I CGCG 1 cut(s) 719
Bsh1285I CGRYCG 2 cut(s) 679, 745
BshFI GGCC 8 cut(s) 391, 501, 546, 733, 1329, 1455, 1620, 2041
BshNI GGYRCC 1 cut(s) 1223
BshTI ACCGGT 1 cut(s) 965
BsiEI CGRYCG 2 cut(s) 679, 745
BsiHKAI GWGCWC 2 cut(s) 796, 987
BsiHKCI CYCGRG 1 cut(s) 1457
BslFI GGGAC 3 cut(s) 30, 1837, 2324
BsmAI GTCTC 7 cut(s) 117, 218, 840, 1583, 1796, 2088, 2441
BsmFI GGGAC 3 cut(s) 30, 1837, 2324
BsmI GAATGC 1 cut(s) 2322
BsnI GGCC 8 cut(s) 391, 501, 546, 733, 1329, 1455, 1620, 2041
Bso31I GGTCTC 1 cut(s) 1796
BsoBI CYCGRG 1 cut(s) 1457
Bsp1286I GDGCHC 4 cut(s) 796, 987, 1026, 1142
Bsp13I TCCGGA 1 cut(s) 329
Bsp143I GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
Bsp19I CCATGG 1 cut(s) 1324
BspANI GGCC 8 cut(s) 391, 501, 546, 733, 1329, 1455, 1620, 2041
BspCNI CTCAG 4 cut(s) 140, 156, 2294, 2451
BspEI TCCGGA 1 cut(s) 329
BspFNI CGCG 1 cut(s) 719
BspHI TCATGA 1 cut(s) 2290
BspLI GGNNCC 8 cut(s) 18, 301, 964, 1084, 1225, 1651, 1873, 1896
BspMAI CTGCAG 3 cut(s) 467, 622, 1759
BspMI ACCTGC 4 cut(s) 470, 617, 625, 658
BspOI GCTAGC 1 cut(s) 1208
BspPI GGATC 4 cut(s) 770, 1866, 1879, 2327
BspQI GCTCTTC 1 cut(s) 2244
BspT107I GGYRCC 1 cut(s) 1223
BspTNI GGTCTC 1 cut(s) 1796
BsrBI CCGCTC 2 cut(s) 439, 594
BsrFI RCCGGY 3 cut(s) 586, 965, 1897
BsrI ACTGG 5 cut(s) 408, 563, 843, 1310, 1825
BssAI RCCGGY 3 cut(s) 586, 965, 1897
BssECI CCNNGG 6 cut(s) 392, 547, 1324, 1456, 1621, 2244
BssMI GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 3 cut(s) 1324, 1621, 2244
Bst2UI CCWGG 2 cut(s) 393, 548
Bst4CI ACNGT 6 cut(s) 1336, 1681, 1724, 1930, 2015, 2029
Bst6I CTCTTC 2 cut(s) 2103, 2244
BstACI GRCGYC 1 cut(s) 58
BstAPI GCANNNNNTGC 2 cut(s) 1838, 2336
BstC8I GCNNGC 9 cut(s) 378, 433, 437, 533, 588, 592, 1206, 1351, 2212
BstDEI CTNAG 6 cut(s) 42, 127, 164, 213, 2281, 2438
BstDSI CCRYGG 1 cut(s) 1324
BstF5I GGATG 4 cut(s) 705, 1239, 1785, 1843
BstFNI CGCG 1 cut(s) 719
BstH2I RGCGCY 1 cut(s) 908
BstHHI GCGC 2 cut(s) 721, 907
BstKTI GATC 9 cut(s) 37, 232, 508, 679, 778, 1411, 1713, 1874, 2335
BstMAI GTCTC 7 cut(s) 117, 218, 840, 1583, 1796, 2088, 2441
BstMBI GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
BstMCI CGRYCG 2 cut(s) 679, 745
BstNI CCWGG 2 cut(s) 393, 548
BstNSI RCATGY 5 cut(s) 949, 1353, 1367, 1542, 1606
BstSCI CCNGG 2 cut(s) 391, 546
BstSFI CTRYAG 5 cut(s) 463, 618, 787, 1166, 1755
BstUI CGCG 1 cut(s) 719
BstV2I GAAGAC 1 cut(s) 2142
BstX2I RGATCY 3 cut(s) 1408, 1871, 2332
BstYI RGATCY 3 cut(s) 1408, 1871, 2332
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 1 cut(s) 1124
BsuRI GGCC 8 cut(s) 391, 501, 546, 733, 1329, 1455, 1620, 2041
BtgI CCRYGG 1 cut(s) 1324
BtgZI GCGATG 1 cut(s) 834
BtrI CACGTC 1 cut(s) 765
BtsCI GGATG 4 cut(s) 705, 1239, 1785, 1843
BtsI GCAGTG 2 cut(s) 1273, 2199
BtsIMutI CAGTG 5 cut(s) 319, 850, 1273, 1317, 2199
BveI ACCTGC 4 cut(s) 470, 617, 625, 658
Cac8I GCNNGC 9 cut(s) 378, 433, 437, 533, 588, 592, 1206, 1351, 2212
CaiI CAGNNNCTG 2 cut(s) 1861, 2336
CciI TCATGA 1 cut(s) 2290
CfoI GCGC 2 cut(s) 721, 907
Cfr10I RCCGGY 3 cut(s) 586, 965, 1897
Cfr13I GGNCC 3 cut(s) 17, 1083, 1900
CseI GACGC 2 cut(s) 692, 739
Csp6I GTAC 2 cut(s) 198, 1224
CspAI ACCGGT 1 cut(s) 965
CviQI GTAC 2 cut(s) 198, 1224
DdeI CTNAG 6 cut(s) 42, 127, 164, 213, 2281, 2438
DpnI GATC 9 cut(s) 36, 231, 507, 678, 777, 1410, 1712, 1873, 2334
DpnII GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
DraI TTTAAA 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 749
DseDI GACNNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 1 cut(s) 1327
Eam1104I CTCTTC 2 cut(s) 2103, 2244
EarI CTCTTC 2 cut(s) 2103, 2244
Ecl136II GAGCTC 2 cut(s) 794, 985
Eco130I CCWWGG 3 cut(s) 1324, 1621, 2244
Eco147I AGGCCT 1 cut(s) 1455
Eco24I GRGCYC 4 cut(s) 796, 987, 1026, 1142
Eco31I GGTCTC 1 cut(s) 1796
Eco47I GGWCC 3 cut(s) 17, 1083, 1900
Eco53kI GAGCTC 2 cut(s) 794, 985
Eco57I CTGAAG 2 cut(s) 1103, 2136
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 1457
EcoICRI GAGCTC 2 cut(s) 794, 985
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 2113
EcoRII CCWGG 2 cut(s) 391, 546
EcoT14I CCWWGG 3 cut(s) 1324, 1621, 2244
EcoT38I GRGCYC 4 cut(s) 796, 987, 1026, 1142
ErhI CCWWGG 3 cut(s) 1324, 1621, 2244
FaqI GGGAC 3 cut(s) 30, 1837, 2324
FauI CCCGC 1 cut(s) 724
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 753
FokI GGATG 4 cut(s) 712, 1246, 1792, 1850
FriOI GRGCYC 4 cut(s) 796, 987, 1026, 1142
GlaI GCGC 2 cut(s) 720, 906
GsuI CTGGAG 3 cut(s) 826, 1209, 1407
HaeII RGCGCY 1 cut(s) 908
HaeIII GGCC 8 cut(s) 391, 501, 546, 733, 1329, 1455, 1620, 2041
HgaI GACGC 2 cut(s) 692, 739
HhaI GCGC 2 cut(s) 721, 907
Hin1I GRCGYC 1 cut(s) 58
Hin6I GCGC 2 cut(s) 719, 905
HinP1I GCGC 2 cut(s) 719, 905
HincII GTYRAC 1 cut(s) 1720
HindII GTYRAC 1 cut(s) 1720
HindIII AAGCTT 1 cut(s) 1955
HphI GGTGA 5 cut(s) 271, 641, 926, 1415, 2119
Hpy166II GTNNAC 4 cut(s) 76, 754, 1250, 1720
Hpy188I TCNGA 8 cut(s) 130, 670, 780, 962, 973, 979, 1710, 1994
Hpy8I GTNNAC 4 cut(s) 76, 754, 1250, 1720
Hpy99I CGWCG 4 cut(s) 421, 520, 576, 983
HpyAV CCTTC 6 cut(s) 30, 1127, 1265, 1336, 1780, 2375
HpyCH4III ACNGT 6 cut(s) 1336, 1681, 1724, 1930, 2015, 2029
HpyCH4IV ACGT 7 cut(s) 58, 323, 487, 756, 764, 1394, 1613
HpyF3I CTNAG 6 cut(s) 42, 127, 164, 213, 2281, 2438
HpySE526I ACGT 7 cut(s) 58, 323, 487, 756, 764, 1394, 1613
Hsp92I GRCGYC 1 cut(s) 58
HspAI GCGC 2 cut(s) 719, 905
Kpn2I TCCGGA 1 cut(s) 329
KpnI GGTACC 1 cut(s) 1227
KroI GCCGGC 1 cut(s) 586
KroNI GCCGGC 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
LguI GCTCTTC 1 cut(s) 2244
LmnI GCTCC 4 cut(s) 299, 332, 1894, 2419
LweI GCATC 7 cut(s) 150, 366, 521, 690, 1798, 1819, 1828
MaeII ACGT 7 cut(s) 58, 323, 487, 756, 764, 1394, 1613
MaeIII GTNAC 7 cut(s) 314, 726, 1100, 1378, 1433, 1865, 2125
MalI GATC 9 cut(s) 36, 231, 507, 678, 777, 1410, 1712, 1873, 2334
MbiI CCGCTC 2 cut(s) 439, 594
MboI GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
MfeI CAATTG 1 cut(s) 1243
MflI RGATCY 3 cut(s) 1408, 1871, 2332
MhlI GDGCHC 4 cut(s) 796, 987, 1026, 1142
MlsI TGGCCA 1 cut(s) 1329
MluCI AATT 7 cut(s) 1004, 1028, 1243, 1688, 1886, 2100, 2113
MluNI TGGCCA 1 cut(s) 1329
MlyI GAGTC 6 cut(s) 119, 435, 590, 1505, 2133, 2333
MmeI TCCRAC 5 cut(s) 46, 803, 1002, 1328, 2334
Mox20I TGGCCA 1 cut(s) 1329
MreI CGCCGGCG 1 cut(s) 586
MroI TCCGGA 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 967
MscI TGGCCA 1 cut(s) 1329
MseI TTAA 5 cut(s) 1008, 1182, 1503, 2388, 2427
MslI CAYNNNNRTG 3 cut(s) 698, 1337, 2030
Msp20I TGGCCA 1 cut(s) 1329
MspA1I CMGCKG 2 cut(s) 724, 747
MspR9I CCNGG 2 cut(s) 393, 548
MunI CAATTG 1 cut(s) 1243
Mva1269I GAATGC 1 cut(s) 2322
MvaI CCWGG 2 cut(s) 393, 548
MvnI CGCG 1 cut(s) 719
NaeI GCCGGC 1 cut(s) 588
NcoI CCATGG 1 cut(s) 1324
NdeII GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
NgoMIV GCCGGC 1 cut(s) 586
NheI GCTAGC 1 cut(s) 1204
NlaIV GGNNCC 8 cut(s) 18, 301, 964, 1084, 1225, 1651, 1873, 1896
NmuCI GTSAC 4 cut(s) 314, 726, 1378, 2125
NspI RCATGY 5 cut(s) 949, 1353, 1367, 1542, 1606
OliI CACNNNNGTG 2 cut(s) 1337, 2030
PaeI GCATGC 1 cut(s) 1353
PagI TCATGA 1 cut(s) 2290
PaqCI CACCTGC 1 cut(s) 617
PceI AGGCCT 1 cut(s) 1455
PciSI GCTCTTC 1 cut(s) 2244
PctI GAATGC 1 cut(s) 2322
PdiI GCCGGC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 967
PfeI GAWTC 5 cut(s) 974, 1125, 1477, 1858, 2413
PinAI ACCGGT 1 cut(s) 965
Ple19I CGATCG 1 cut(s) 679
PleI GAGTC 6 cut(s) 119, 434, 589, 1505, 2132, 2332
PpsI GAGTC 6 cut(s) 119, 434, 589, 1505, 2132, 2332
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 2 cut(s) 796, 987
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 391, 546
PspGI CCWGG 2 cut(s) 391, 546
PspN4I GGNNCC 8 cut(s) 18, 301, 964, 1084, 1225, 1651, 1873, 1896
PspPI GGNCC 3 cut(s) 17, 1083, 1900
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 3 cut(s) 467, 622, 1759
PstNI CAGNNNCTG 2 cut(s) 1861, 2336
PsuI RGATCY 3 cut(s) 1408, 1871, 2332
PvuI CGATCG 1 cut(s) 679
RsaI GTAC 2 cut(s) 199, 1225
RsaNI GTAC 2 cut(s) 198, 1224
RseI CAYNNNNRTG 3 cut(s) 698, 1337, 2030
SacI GAGCTC 2 cut(s) 796, 987
SapI GCTCTTC 1 cut(s) 2244
SaqAI TTAA 5 cut(s) 1008, 1182, 1503, 2388, 2427
Sau3AI GATC 9 cut(s) 34, 229, 505, 676, 775, 1408, 1710, 1871, 2332
Sau96I GGNCC 3 cut(s) 17, 1083, 1900
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 6 cut(s) 119, 435, 590, 1505, 2133, 2333
ScrFI CCNGG 2 cut(s) 393, 548
SduI GDGCHC 4 cut(s) 796, 987, 1026, 1142
SfaNI GCATC 7 cut(s) 150, 366, 521, 690, 1798, 1819, 1828
SfcI CTRYAG 5 cut(s) 463, 618, 787, 1166, 1755
SgrAI CRCCGGYG 1 cut(s) 586
SinI GGWCC 3 cut(s) 17, 1083, 1900
SmiMI CAYNNNNRTG 3 cut(s) 698, 1337, 2030
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
SpeI ACTAGT 1 cut(s) 1739
SphI GCATGC 1 cut(s) 1353
Sse9I AATT 7 cut(s) 1004, 1028, 1243, 1688, 1886, 2100, 2113
SseBI AGGCCT 1 cut(s) 1455
SspI AATATT 1 cut(s) 2232
SstI GAGCTC 2 cut(s) 796, 987
StuI AGGCCT 1 cut(s) 1455
StyD4I CCNGG 2 cut(s) 391, 546
StyI CCWWGG 3 cut(s) 1324, 1621, 2244
TaaI ACNGT 6 cut(s) 1336, 1681, 1724, 1930, 2015, 2029
TaiI ACGT 7 cut(s) 61, 326, 490, 759, 767, 1397, 1616
TaqI TCGA 3 cut(s) 504, 515, 675
TaqII GACCGA 1 cut(s) 1784
TasI AATT 7 cut(s) 1004, 1028, 1243, 1688, 1886, 2100, 2113
TatI WGTACW 1 cut(s) 197
TauI GCSGC 3 cut(s) 724, 852, 958
TfiI GAWTC 5 cut(s) 974, 1125, 1477, 1858, 2413
Tru1I TTAA 5 cut(s) 1008, 1182, 1503, 2388, 2427
Tru9I TTAA 5 cut(s) 1008, 1182, 1503, 2388, 2427
TscAI CASTG 5 cut(s) 319, 850, 1273, 1317, 2199
TseFI GTSAC 4 cut(s) 314, 726, 1378, 2125
Tsp45I GTSAC 4 cut(s) 314, 726, 1378, 2125
TspDTI ATGAA 5 cut(s) 921, 1545, 1740, 2210, 2279
TspGWI ACGGA 4 cut(s) 400, 555, 757, 1884
TspRI CASTG 5 cut(s) 319, 850, 1273, 1317, 2199
VpaK11BI GGWCC 3 cut(s) 17, 1083, 1900
XapI RAATTY 4 cut(s) 1004, 1028, 1886, 2113
XbaI TCTAGA 2 cut(s) 455, 610
XceI RCATGY 5 cut(s) 949, 1353, 1367, 1542, 1606
XcmI CCANNNNNNNNNTGG 3 cut(s) 693, 1311, 1910
XmiI GTMKAC 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 967
ZraI GACGTC 1 cut(s) 59
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.