Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003536.1

Orthogroup ID

OG0016457

Physical Location & Seq

Genomic Coordinates Reverse (-)

24367 .. 27308

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgaactcaaccaaaattcacatcccagaaattgaaaatcaaaatcaaatcctagcagtggctcattcaacatcgacgtcgaagacctcgacacttcctcctactactccatcgtcgttgcgtctcctcctcgccaccaataccaaaactcgcggacttattgcctgcagcactggcatcggtgccgtgaccttagccaacaagttccccaaagtcttcacggccacgtgtctctccccgtctgacgccctcaacgcccagctccaaagttctcctgtctccgacatgtccacggcgccggaatccgccatcaagatcatcgacacgtggctcaacactcccttcaaagtgccctgtcctgcgtcgaagttgaaaccttggccggaaattggagctgattctgatttgaaggagtgctctgatactgagttctttatcaagtgggataggaaatgggatatgttatttgatgaagatctcaaggctgcgaacaaggctattgatcaagaaattggagaatgggggttgagcgcagttttatatcatgggtatgggattttgttggaagttgatgaggtcgaggagggtttggagtggggcggtggcggtcgtgctctgtattggggtggtcagttggaattgcagccgtgtttttcggccgggtctgaataccccaaagttcgctgctttgttgcgccatcaccgcctggaatctccgctaaaggacaccacagggaggagcggacggtcgagacgagccgatctagagagtttcaccaccggaaaccgccggaaaagccaggtcggatttccgagttcgggtcgggtcagtcgcaacgaagagagagaacggagagaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_2 Cupin_7 LacAB_rpiB

Protein Analysis

287

Amino Acids

31.64

Weight (kDa)

6.2

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LacAB_rpiB	PF02502	34 - 116	4.4e-09	Ribose/Galactose Isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217791
rosa_laevigata	RLG00000003265 RLG00000008669
rosa_multiflora	Rmu_sc0003536.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180330
rosa_samantha	Rh4CG138300 Rh4DG125300 Rh4DG277500 Rh7AG324300 Rh7BG105600 Rh7BG315400 Rh7CG051300 Rh7CG330800 Rh7CG341200
rosa_wichuraiana	Rw4G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AccB1I	GGYRCC	2 cut(s)	182, 295
AccBSI	CCGCTC	1 cut(s)	742
AccII	CGCG	1 cut(s)	153
AciI	CCGC	8 cut(s)	153, 306, 600, 606, 704, 717, 742, 788
AcoI	YGGCCR	3 cut(s)	222, 380, 657
AcsI	RAATTY	1 cut(s)	15
AcvI	CACGTG	2 cut(s)	228, 327
AcyI	GRCGYC	3 cut(s)	77, 246, 296
AfiI	CCNNNNNNNGG	4 cut(s)	58, 389, 736, 819
AflIII	ACRYGT	3 cut(s)	227, 285, 324
AgsI	TTSAA	5 cut(s)	35, 69, 346, 373, 409
AjnI	CCWGG	2 cut(s)	706, 799
AluBI	AGCT	2 cut(s)	262, 395
AluI	AGCT	2 cut(s)	262, 395
Alw21I	GWGCWC	2 cut(s)	419, 616
Alw26I	GTCTC	4 cut(s)	128, 236, 283, 746
AoxI	GGCC	3 cut(s)	222, 380, 657
ApeKI	GCWGC	4 cut(s)	168, 485, 643, 684
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	3 cut(s)	298, 533, 697
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	2 cut(s)	693, 767
BaeGI	GKGCMC	1 cut(s)	354
BanI	GGYRCC	2 cut(s)	182, 295
BbrPI	CACGTG	2 cut(s)	228, 327
BbsI	GAAGAC	2 cut(s)	89, 208
Bbv12I	GWGCWC	2 cut(s)	419, 616
BbvI	GCAGC	4 cut(s)	180, 472, 655, 671
BccI	CCATC	3 cut(s)	118, 317, 706
BceAI	ACGGC	4 cut(s)	170, 237, 309, 631
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	2 cut(s)	708, 801
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	4 cut(s)	128, 236, 283, 746
BfaI	CTAG	2 cut(s)	53, 765
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	299
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	4 cut(s)	169, 486, 644, 685
BlsI	GCNGC	4 cut(s)	170, 487, 645, 686
Bme1390I	CCNGG	3 cut(s)	661, 708, 801
BmiI	GGNNCC	2 cut(s)	184, 297
BmrFI	CCNGG	3 cut(s)	661, 708, 801
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	89, 208
Bpu10I	CCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	661
BsaAI	YACGTR	2 cut(s)	228, 327
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	3 cut(s)	77, 246, 296
BsaJI	CCNNGG	2 cut(s)	291, 377
BsaWI	WCCGGW	1 cut(s)	780
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 389, 736, 819
Bse1I	ACTGG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	708, 801
BseDI	CCNNGG	2 cut(s)	291, 377
BseGI	GGATG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	4 cut(s)	58, 389, 736, 819
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	4 cut(s)	116, 119, 596, 752
BseSI	GKGCMC	1 cut(s)	354
BseX3I	CGGCCG	1 cut(s)	657
BseXI	GCAGC	4 cut(s)	180, 472, 655, 671
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	3 cut(s)	610, 660, 750
BshFI	GGCC	3 cut(s)	224, 382, 659
BshNI	GGYRCC	2 cut(s)	182, 295
BsiEI	CGRYCG	3 cut(s)	610, 660, 750
BsiHKAI	GWGCWC	2 cut(s)	419, 616
BsiSI	CCGG	5 cut(s)	299, 383, 660, 781, 791
BslI	CCNNNNNNNGG	4 cut(s)	58, 389, 736, 819
BsmAI	GTCTC	4 cut(s)	128, 236, 283, 746
BsmBI	CGTCTC	2 cut(s)	128, 746
BsnI	GGCC	3 cut(s)	224, 382, 659
Bsp1286I	GDGCHC	3 cut(s)	354, 419, 616
Bsp143I	GATC	4 cut(s)	315, 475, 502, 761
BspACI	CCGC	8 cut(s)	153, 306, 600, 606, 704, 717, 742, 788
BspANI	GGCC	3 cut(s)	224, 382, 659
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	184, 297
BspMAI	CTGCAG	1 cut(s)	170
BspT107I	GGYRCC	2 cut(s)	182, 295
BsrBI	CCGCTC	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	291, 377
BssMI	GATC	4 cut(s)	315, 475, 502, 761
BssNI	GRCGYC	3 cut(s)	77, 246, 296
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	708, 801
Bst4CI	ACNGT	1 cut(s)	748
Bst6I	CTCTTC	1 cut(s)	835
BstACI	GRCGYC	3 cut(s)	77, 246, 296
BstBAI	YACGTR	2 cut(s)	228, 327
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	193, 426
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	3 cut(s)	298, 533, 697
BstKTI	GATC	4 cut(s)	318, 478, 505, 764
BstMAI	GTCTC	4 cut(s)	128, 236, 283, 746
BstMBI	GATC	4 cut(s)	315, 475, 502, 761
BstMCI	CGRYCG	3 cut(s)	610, 660, 750
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 254, 494, 703, 796
BstNI	CCWGG	2 cut(s)	708, 801
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	3 cut(s)	659, 706, 799
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	180, 472, 655, 671
BstV2I	GAAGAC	2 cut(s)	89, 208
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BstZI	CGGCCG	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	224, 382, 659
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 171
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	3 cut(s)	298, 533, 697
CseI	GACGC	3 cut(s)	110, 254, 351
CviAII	CATG	2 cut(s)	286, 545
DdeI	CTNAG	2 cut(s)	193, 426
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	4 cut(s)	317, 477, 504, 763
DpnII	GATC	4 cut(s)	315, 475, 502, 761
EaeI	YGGCCR	3 cut(s)	222, 380, 657
EagI	CGGCCG	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
EciI	GGCGGA	1 cut(s)	295
EclXI	CGGCCG	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	377
Eco52I	CGGCCG	1 cut(s)	657
Eco72I	CACGTG	2 cut(s)	228, 327
EcoRII	CCWGG	2 cut(s)	706, 799
EcoT14I	CCWWGG	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	2 cut(s)	128, 746
FaeI	CATG	2 cut(s)	289, 548
FaiI	YATR	5 cut(s)	287, 461, 541, 546, 552
FatI	CATG	2 cut(s)	285, 544
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	4 cut(s)	169, 486, 644, 685
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	169, 486, 644, 685
FspBI	CTAG	2 cut(s)	53, 765
GlaI	GCGC	3 cut(s)	297, 532, 696
GluI	GCNGC	4 cut(s)	169, 486, 644, 685
GsaI	CCCAGC	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	224, 382, 659
HapII	CCGG	5 cut(s)	299, 383, 660, 781, 791
HgaI	GACGC	3 cut(s)	110, 254, 351
HhaI	GCGC	3 cut(s)	298, 533, 697
Hin1I	GRCGYC	3 cut(s)	77, 246, 296
Hin1II	CATG	2 cut(s)	289, 548
Hin6I	GCGC	3 cut(s)	296, 531, 695
HinP1I	GCGC	3 cut(s)	296, 531, 695
HinfI	GANTC	4 cut(s)	302, 398, 711, 858
HpaII	CCGG	5 cut(s)	299, 383, 660, 781, 791
HphI	GGTGA	2 cut(s)	693, 767
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	8 cut(s)	244, 283, 403, 421, 667, 807, 814, 863
Hpy188III	TCNNGA	4 cut(s)	313, 506, 751, 765
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	4 cut(s)	79, 82, 118, 367
HpyAV	CCTTC	2 cut(s)	352, 403
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4IV	ACGT	3 cut(s)	77, 227, 326
HpyCH4V	TGCA	2 cut(s)	168, 643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 254, 494, 703, 796
HpyF3I	CTNAG	2 cut(s)	193, 426
HpySE526I	ACGT	3 cut(s)	77, 227, 326
Hsp92I	GRCGYC	3 cut(s)	77, 246, 296
Hsp92II	CATG	2 cut(s)	289, 548
HspAI	GCGC	3 cut(s)	296, 531, 695
KasI	GGCGCC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	315, 475, 502, 761
LmnI	GCTCC	3 cut(s)	267, 392, 739
Lsp1109I	GCAGC	4 cut(s)	180, 472, 655, 671
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	53, 765
MaeII	ACGT	3 cut(s)	77, 227, 326
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	317, 477, 504, 763
MbiI	CCGCTC	1 cut(s)	742
MboI	GATC	4 cut(s)	315, 475, 502, 761
MboII	GAAGA	4 cut(s)	94, 208, 485, 852
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	3 cut(s)	354, 419, 616
MluCI	AATT	5 cut(s)	15, 30, 387, 510, 638
Mly113I	GGCGCC	1 cut(s)	296
MmeI	TCCRAC	4 cut(s)	306, 543, 615, 785
MnlI	CCTC	9 cut(s)	97, 108, 137, 140, 260, 568, 574, 577, 730
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	5 cut(s)	299, 383, 660, 781, 791
MspR9I	CCNGG	3 cut(s)	661, 708, 801
MvaI	CCWGG	2 cut(s)	708, 801
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	5 cut(s)	174, 254, 494, 703, 796
NarI	GGCGCC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	661
NdeII	GATC	4 cut(s)	315, 475, 502, 761
NlaIII	CATG	2 cut(s)	289, 548
NlaIV	GGNNCC	2 cut(s)	184, 297
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 752
PfeI	GAWTC	4 cut(s)	302, 398, 711, 858
PkrI	GCNGC	4 cut(s)	170, 487, 645, 686
PluTI	GGCGCC	1 cut(s)	299
PmaCI	CACGTG	2 cut(s)	228, 327
PmlI	CACGTG	2 cut(s)	228, 327
Ppu21I	YACGTR	2 cut(s)	228, 327
PscI	ACATGT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	706, 799
PspCI	CACGTG	2 cut(s)	228, 327
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	2 cut(s)	706, 799
PspN4I	GGNNCC	2 cut(s)	184, 297
PstI	CTGCAG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	549
SatI	GCNGC	4 cut(s)	169, 486, 644, 685
Sau3AI	GATC	4 cut(s)	315, 475, 502, 761
ScrFI	CCNGG	3 cut(s)	661, 708, 801
SduI	GDGCHC	3 cut(s)	354, 419, 616
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	15, 30, 387, 510, 638
SsiI	CCGC	8 cut(s)	153, 306, 600, 606, 704, 717, 742, 788
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	53, 765
StyD4I	CCNGG	3 cut(s)	659, 706, 799
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	748
TaiI	ACGT	3 cut(s)	80, 230, 329
TaqI	TCGA	7 cut(s)	74, 80, 89, 321, 365, 579, 750
TasI	AATT	5 cut(s)	15, 30, 387, 510, 638
TfiI	GAWTC	4 cut(s)	302, 398, 711, 858
TscAI	CASTG	2 cut(s)	63, 178
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	168, 485, 643, 684
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	17, 486
TspRI	CASTG	2 cut(s)	63, 178
XapI	RAATTY	1 cut(s)	15
XbaI	TCTAGA	1 cut(s)	764
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	2 cut(s)	53, 765
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.