Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2392

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 577 bp

catgatgaaaacgctggaaaagtaccataggtgcaattatggtgccctcgaagccaaccaacctgtaaacgagactcagaacagttatcaggaatatttgaagcttaaagcaagagtggaggtcctccaacgatctcagagaaaccttcttggggaagatttgggcccactgaacacgaaggagcttgagcagcttgagcatcaactagagtcatccctgaagcatattaggtcaacaaagactcagtttatgctggatgagctttctgatctccaaaacagggaacaaatgcttgttgaaactaataaatccttaaggaggaagctggaagaaactaatctgcaaggtgctccacttcgtctggcatgggacggtggctatggccagaacaacattcatcagcacaacaaccgtcttcctccccagtcgcaaggtttgtttcagccactgcaaggaaacaacacctccgctttgcaaatcggatacactccgctgagctcagatcatcatcaccagatgaatgcaggaaatccaggccaaaatgtcaatggattcattccagggtggatgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

191

Amino Acids

21.91

Weight (kDa)

6.71

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	20 - 110	1.2e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	2 cut(s)	469, 492
AcoI	YGGCCR	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	4 cut(s)	152, 281, 319, 453
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	101, 300
AjnI	CCWGG	2 cut(s)	533, 560
AluBI	AGCT	6 cut(s)	104, 185, 194, 263, 326, 499
AluI	AGCT	6 cut(s)	104, 185, 194, 263, 326, 499
Alw21I	GWGCWC	2 cut(s)	353, 501
Alw26I	GTCTC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	3 cut(s)	164, 383, 536
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	122, 164, 165
AsuHPI	GGTGA	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	2 cut(s)	47, 168
BalI	TGGCCA	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	168, 501
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	353, 501
BbvI	GCAGC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	535, 562
BciVI	GTATCC	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	207
BfrI	CTTAAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	1 cut(s)	192
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	535, 562
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	122, 164, 165
BmiI	GGNNCC	2 cut(s)	44, 166
BmrFI	CCNGG	2 cut(s)	535, 562
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	209, 559
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	207, 216
BsaBI	GATNNNNATC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 281, 319, 453
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	535, 562
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	3 cut(s)	213, 263, 574
BseJI	GATNNNNATC	1 cut(s)	508
BseLI	CCNNNNNNNGG	4 cut(s)	152, 281, 319, 453
BseMII	CTCAG	5 cut(s)	90, 150, 258, 486, 514
BseNI	ACTGG	1 cut(s)	425
BseSI	GKGCMC	2 cut(s)	47, 168
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	3 cut(s)	166, 385, 538
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	353, 501
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	4 cut(s)	152, 281, 319, 453
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	166, 385, 538
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	4 cut(s)	47, 168, 353, 501
Bsp143I	GATC	3 cut(s)	132, 269, 503
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	2 cut(s)	469, 492
BspANI	GGCC	3 cut(s)	166, 385, 538
BspCNI	CTCAG	5 cut(s)	89, 149, 257, 487, 513
BspLI	GGNNCC	2 cut(s)	44, 166
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	132, 269, 503
Bst2UI	CCWGG	2 cut(s)	535, 562
Bst4CI	ACNGT	3 cut(s)	84, 375, 414
BstAFI	CTTAAG	1 cut(s)	314
BstDEI	CTNAG	5 cut(s)	76, 136, 244, 495, 500
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	213, 263, 574
BstKTI	GATC	3 cut(s)	135, 272, 506
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	132, 269, 503
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 191, 197, 260
BstNI	CCWGG	2 cut(s)	535, 562
BstSCI	CCNGG	2 cut(s)	533, 560
BstSLI	GKGCMC	2 cut(s)	47, 168
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	166, 385, 538
BtsCI	GGATG	3 cut(s)	213, 263, 574
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	168, 447
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	3 cut(s)	122, 164, 165
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	2 cut(s)	2, 367
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	5 cut(s)	76, 136, 244, 495, 500
DpnI	GATC	3 cut(s)	134, 271, 505
DpnII	GATC	3 cut(s)	132, 269, 503
EaeI	YGGCCR	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	168, 501
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	533, 560
EcoT38I	GRGCYC	2 cut(s)	168, 501
FaeI	CATG	1 cut(s)	370
FaiI	YATR	7 cut(s)	3, 28, 40, 226, 252, 368, 382
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	200, 270
FriOI	GRGCYC	2 cut(s)	168, 501
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	166, 385, 538
Hin1II	CATG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	4 cut(s)	74, 210, 242, 553
HphI	GGTGA	1 cut(s)	504
Hpy166II	GTNNAC	2 cut(s)	68, 235
Hpy188I	TCNGA	5 cut(s)	79, 139, 269, 483, 503
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	2 cut(s)	68, 235
HpyAV	CCTTC	2 cut(s)	156, 173
HpyCH4III	ACNGT	3 cut(s)	84, 375, 414
HpyCH4V	TGCA	5 cut(s)	34, 344, 452, 476, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 191, 197, 260
HpyF3I	CTNAG	5 cut(s)	76, 136, 244, 495, 500
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	132, 269, 503
LmnI	GCTCC	2 cut(s)	182, 356
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	2 cut(s)	209, 559
MaeI	CTAG	1 cut(s)	207
MalI	GATC	3 cut(s)	134, 271, 505
MboI	GATC	3 cut(s)	132, 269, 503
MboII	GAAGA	3 cut(s)	168, 342, 408
MhlI	GDGCHC	4 cut(s)	47, 168, 353, 501
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	385
MlyI	GAGTC	3 cut(s)	68, 219, 236
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	57, 113, 135, 313, 430, 476
Mox20I	TGGCCA	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	2 cut(s)	106, 315
Msp20I	TGGCCA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	494
MspCI	CTTAAG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	535, 562
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	2 cut(s)	535, 562
MwoI	GCNNNNNNNGC	4 cut(s)	51, 191, 197, 260
NdeII	GATC	3 cut(s)	132, 269, 503
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	44, 166
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	3 cut(s)	68, 218, 236
PpsI	GAGTC	3 cut(s)	68, 218, 236
PpuMI	RGGWCCY	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	533, 560
PspGI	CCWGG	2 cut(s)	533, 560
PspN4I	GGNNCC	2 cut(s)	44, 166
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	122, 164, 165
PspPPI	RGGWCCY	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	106, 315
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	132, 269, 503
Sau96I	GGNCC	3 cut(s)	122, 164, 165
SchI	GAGTC	3 cut(s)	68, 219, 236
ScrFI	CCNGG	2 cut(s)	535, 562
SduI	GDGCHC	4 cut(s)	47, 168, 353, 501
SfaNI	GCATC	2 cut(s)	209, 559
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	3 cut(s)	186, 195, 314
SmoI	CTYRAG	3 cut(s)	186, 195, 314
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	469, 492
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	533, 560
TaaI	ACNGT	3 cut(s)	84, 375, 414
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	106, 315
Tru9I	TTAA	2 cut(s)	106, 315
TscAI	CASTG	2 cut(s)	175, 454
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	21, 387, 534, 545
TspRI	CASTG	2 cut(s)	175, 454
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.