Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003659.1

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

22401 .. 25493

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggggaagaggaagaggaagaggaagagtggggaagaagagaaaaggagttgcataattatcaacgcctcagctacagctgtggcctcgccttgtaaattacttcccacacttttccctgaacttcttttgaatatcaatggtaaatcttccgaaccccaccgaccccctaagccagatctccccgtagaccctcccaccgagactcccgccactacagccccaccctccgccgttgactcagctgaaaacgtgtccaaggcggactccgaggaccccaagaccgccgcggccgcagaggatggcgctgctccggcttctgttgttgagaagaagatccgccgcgccgagcgcttcggtatatctgtgcagctcactgaagaagagaagcgcaattctcgagctgaaagatttggtactgtttctacatcgcatggatcagaagcatccaaaaagtctgaggagctgaagagaaaggctagagcagagaggtttgggattgctgctccacctgtggcaagtgatgaggatgcgaggaagaaagctcgactggcccgatttgcacctgtttctaagactgctaaacctgaccctcaggaagaagaaaaaaggaaggcaaggtcactcaggttttcaaatggttctgcaggttctctctctcaagtgaatgacaagggaaatattgagcagaaggcagcgattgcaggcggtgctgtaggaaaggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

25.8

Weight (kDa)

9.74

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	110 - 139	1.5e-11	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	2 cut(s)	290, 345
AclWI	GGATC	2 cut(s)	331, 445
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	2 cut(s)	399, 488
AfaI	GTAC	1 cut(s)	418
AfeI	AGCGCT	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	133, 636
AluBI	AGCT	7 cut(s)	74, 80, 245, 373, 404, 466, 545
AluI	AGCT	7 cut(s)	74, 80, 245, 373, 404, 466, 545
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	331, 445
Ama87I	CYCGRG	1 cut(s)	399
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	3 cut(s)	84, 291, 552
ApeKI	GCWGC	4 cut(s)	308, 370, 503, 695
AspLEI	GCGC	4 cut(s)	308, 347, 354, 393
AspS9I	GGNCC	2 cut(s)	274, 553
AvaI	CYCGRG	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	295, 382, 490, 707
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	4 cut(s)	75, 216, 645, 714
BfoI	RGCGCY	2 cut(s)	309, 355
BfuAI	ACCTGC	1 cut(s)	638
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	8 cut(s)	288, 291, 294, 309, 343, 371, 504, 696
BlsI	GCNGC	8 cut(s)	289, 292, 295, 310, 344, 372, 505, 697
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	274, 553
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	2 cut(s)	455, 520
Bpu10I	CCTNAGC	2 cut(s)	70, 171
BpuEI	CTTGAG	1 cut(s)	645
BsaJI	CCNNGG	3 cut(s)	258, 270, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bse1I	ACTGG	1 cut(s)	555
Bse21I	CCTNAGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	258, 270, 288
BseGI	GGATG	3 cut(s)	307, 446, 535
BseMII	CTCAG	5 cut(s)	84, 255, 450, 608, 640
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	476
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	4 cut(s)	295, 382, 490, 707
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	2 cut(s)	290, 345
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	86, 293, 554
BsiEI	CGRYCG	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	86, 293, 554
BsoBI	CYCGRG	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	178, 336, 437
BspANI	GGCC	3 cut(s)	86, 293, 554
BspCNI	CTCAG	5 cut(s)	83, 254, 451, 607, 639
BspFNI	CGCG	2 cut(s)	290, 345
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	638
BspPI	GGATC	2 cut(s)	331, 445
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	3 cut(s)	258, 270, 288
BssMI	GATC	3 cut(s)	178, 336, 437
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	7 cut(s)	2, 8, 14, 20, 33, 378, 464
BstAPI	GCANNNNNTGC	2 cut(s)	701, 710
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	7 cut(s)	70, 171, 241, 459, 573, 594, 626
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	307, 446, 535
BstFNI	CGCG	2 cut(s)	290, 345
BstH2I	RGCGCY	2 cut(s)	309, 355
BstHHI	GCGC	4 cut(s)	308, 347, 354, 393
BstKTI	GATC	3 cut(s)	181, 339, 440
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	178, 336, 437
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	8 cut(s)	218, 293, 314, 351, 551, 560, 701, 710
BstSFI	CTRYAG	4 cut(s)	75, 216, 645, 714
BstUI	CGCG	2 cut(s)	290, 345
BstV1I	GCAGC	4 cut(s)	295, 382, 490, 707
BstX2I	RGATCY	2 cut(s)	178, 336
BstYI	RGATCY	2 cut(s)	178, 336
BstZI	CGGCCG	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	86, 293, 554
BtgI	CCRYGG	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	307, 446, 535
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	1 cut(s)	706
CciNI	GCGGCCGC	1 cut(s)	291
CfoI	GCGC	4 cut(s)	308, 347, 354, 393
Cfr13I	GGNCC	2 cut(s)	274, 553
Cfr42I	CCGCGG	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	2 cut(s)	434, 726
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	7 cut(s)	70, 171, 241, 459, 573, 594, 626
DpnI	GATC	3 cut(s)	180, 338, 439
DpnII	GATC	3 cut(s)	178, 336, 437
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	7 cut(s)	2, 8, 14, 20, 33, 378, 464
EarI	CTCTTC	7 cut(s)	2, 8, 14, 20, 33, 378, 464
EciI	GGCGGA	3 cut(s)	220, 278, 329
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	274
Eco47III	AGCGCT	1 cut(s)	353
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	399, 488
Eco81I	CCTNAGG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	437, 729
FaiI	YATR	4 cut(s)	56, 362, 435, 727
FatI	CATG	2 cut(s)	433, 725
FauI	CCCGC	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	8 cut(s)	288, 291, 294, 309, 343, 371, 504, 696
FokI	GGATG	3 cut(s)	314, 433, 542
Fsp4HI	GCNGC	8 cut(s)	288, 291, 294, 309, 343, 371, 504, 696
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	4 cut(s)	307, 346, 353, 392
GluI	GCNGC	8 cut(s)	288, 291, 294, 309, 343, 371, 504, 696
HaeII	RGCGCY	2 cut(s)	309, 355
HaeIII	GGCC	3 cut(s)	86, 293, 554
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	4 cut(s)	308, 347, 354, 393
Hin1II	CATG	2 cut(s)	437, 729
Hin6I	GCGC	4 cut(s)	306, 345, 352, 391
HinP1I	GCGC	4 cut(s)	306, 345, 352, 391
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	205, 239, 266
HpaII	CCGG	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	190, 238
Hpy188I	TCNGA	4 cut(s)	154, 271, 442, 460
Hpy188III	TCNNGA	2 cut(s)	399, 596
Hpy8I	GTNNAC	2 cut(s)	190, 238
HpyAV	CCTTC	2 cut(s)	607, 685
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	5 cut(s)	54, 370, 563, 647, 704
HpyF10VI	GCNNNNNNNGC	8 cut(s)	218, 293, 314, 351, 551, 560, 701, 710
HpyF3I	CTNAG	7 cut(s)	70, 171, 241, 459, 573, 594, 626
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	437, 729
HspAI	GCGC	4 cut(s)	306, 345, 352, 391
KspI	CCGCGG	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	178, 336, 437
LmnI	GCTCC	3 cut(s)	316, 463, 511
Lsp1109I	GCAGC	4 cut(s)	295, 382, 490, 707
LweI	GCATC	2 cut(s)	455, 520
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	621
MalI	GATC	3 cut(s)	180, 338, 439
MboI	GATC	3 cut(s)	178, 336, 437
MflI	RGATCY	2 cut(s)	178, 336
MluCI	AATT	3 cut(s)	57, 98, 394
MlyI	GAGTC	3 cut(s)	199, 233, 260
MspA1I	CMGCKG	3 cut(s)	80, 245, 290
MspI	CCGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	290, 345
MwoI	GCNNNNNNNGC	8 cut(s)	218, 293, 314, 351, 551, 560, 701, 710
NdeII	GATC	3 cut(s)	178, 336, 437
NlaIII	CATG	2 cut(s)	437, 729
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	621
NotI	GCGGCCGC	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PkrI	GCNGC	8 cut(s)	289, 292, 295, 310, 344, 372, 505, 697
PleI	GAGTC	3 cut(s)	199, 233, 260
PpsI	GAGTC	3 cut(s)	199, 233, 260
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	274, 553
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	178, 336
PvuII	CAGCTG	2 cut(s)	80, 245
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SacII	CCGCGG	1 cut(s)	291
SatI	GCNGC	8 cut(s)	288, 291, 294, 309, 343, 371, 504, 696
Sau3AI	GATC	3 cut(s)	178, 336, 437
Sau96I	GGNCC	2 cut(s)	274, 553
SchI	GAGTC	3 cut(s)	199, 233, 260
SfaNI	GCATC	2 cut(s)	455, 520
SfcI	CTRYAG	4 cut(s)	75, 216, 645, 714
Sfr274I	CTCGAG	1 cut(s)	399
Sfr303I	CCGCGG	1 cut(s)	291
SgrBI	CCGCGG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	399, 660
SmoI	CTYRAG	2 cut(s)	399, 660
Sse9I	AATT	3 cut(s)	57, 98, 394
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	400, 547
TasI	AATT	3 cut(s)	57, 98, 394
TauI	GCSGC	4 cut(s)	290, 293, 296, 345
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	4 cut(s)	308, 370, 503, 695
Tsp45I	GTSAC	1 cut(s)	621
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.