Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003711.1

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

112353 .. 117144

Gene Structure 4792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggaaggacaccccgaatataagcgtgagaatccagtgttagtcatgaatttcacagcttttagagacaaagttttcaaagacgtaaggcttatagtgtcgatgctgtcctcttctattttcaaatactccaacttcaaaatggttaaagattttgcattattgagagctgtctgctgtaatcacaagaaaggcccagatgaagtatataatagagttttgggaccattcgtgcatgcaaagaaaagccgacggcgccgagtatctcagaacctctacacatccccagaaccaatggcgaccgccttgagctgcggccagaccatcttcctcgctcctccttctcgcatcacctctcgggatgtgaagcttagacgactcaccaagccaaacagggttgcatgcaacttcactccaaagtcaatgcctatattttcaaccagcagaccacctaatcaacttctgcctgtactgcccagagtttcaggattgccaagcttggacctttctgctgcatcatccacagtgctaagggggaatgaagctggccggtcacagaaaatatccatcctactcagacaacgcaaatcttcaacattggtacaagcaaagaaggataatagttcaatcactatacctttccctaaaatgactgagaagccagagtggtggtggagaactttagcatgtctcccttatttagcatctttgcagatgtctgaggttggcttttatattcaaccctttgcagaacactatcaactttttggagatttgatttattttgtccccggagcaataaagaggttaccacagtggttcacaatgacatatgtcatggtggcatattttggagtggtgaagaagaaacagtggcctcacttctttaggtaccatgttattatggccatgttattagaaacgatgctgcaagtggtagcacagtcgagcaatttctttccgcttatacacttcaatggtacatttggcatagagtattgggcggctgtggcattcttgtacattttgatcttgttggagtgcataaggtgtgctcttgctggcaagtatgttaagctcccgtttttcagtactcctgctctagctcatactcttttcaccgtagaaggcaggtacagacctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

382

Amino Acids

43.87

Weight (kDa)

10.06

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	193 - 366	3.3e-68	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1122
Acc65I	GGTACC	1 cut(s)	891
AccB1I	GGYRCC	2 cut(s)	255, 891
AciI	CCGC	4 cut(s)	303, 315, 962, 1004
AcoI	YGGCCR	3 cut(s)	316, 547, 906
AcsI	RAATTY	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	256
AfaI	GTAC	7 cut(s)	471, 603, 893, 982, 1022, 1093, 1136
AgsI	TTSAA	8 cut(s)	79, 124, 139, 438, 594, 627, 740, 976
AluBI	AGCT	8 cut(s)	59, 170, 312, 370, 498, 545, 1078, 1106
AluI	AGCT	8 cut(s)	59, 170, 312, 370, 498, 545, 1078, 1106
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	2 cut(s)	60, 695
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	5 cut(s)	193, 316, 547, 875, 906
ApeKI	GCWGC	3 cut(s)	312, 512, 928
ApoI	RAATTY	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	891
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	194, 224, 502
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	4 cut(s)	343, 373, 871, 1111
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	2 cut(s)	224, 502
BalI	TGGCCA	1 cut(s)	908
BanI	GGYRCC	2 cut(s)	255, 891
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	3 cut(s)	299, 499, 915
BccI	CCATC	2 cut(s)	332, 575
BceAI	ACGGC	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	60, 695
BfaI	CTAG	1 cut(s)	1103
BfoI	RGCGCY	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	1122
BisI	GCNGC	5 cut(s)	313, 316, 513, 929, 1005
BlsI	GCNGC	5 cut(s)	314, 317, 514, 930, 1006
BmcAI	AGTACT	1 cut(s)	1093
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	2 cut(s)	224, 502
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	194, 224, 502
BmiI	GGNNCC	3 cut(s)	225, 257, 893
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	5 cut(s)	93, 357, 524, 713, 915
BoxI	GACNNNNGTC	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	790
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	790
BseGI	GGATG	4 cut(s)	281, 367, 518, 567
BseMII	CTCAG	4 cut(s)	281, 589, 645, 711
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	299, 499, 915
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	195, 318, 549, 877, 908
BshNI	GGYRCC	2 cut(s)	255, 891
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	550, 792
BslFI	GGGAC	2 cut(s)	237, 773
BsmAI	GTCTC	2 cut(s)	60, 695
BsmFI	GGGAC	2 cut(s)	237, 773
BsmI	GAATGC	1 cut(s)	1013
BsnI	GGCC	5 cut(s)	195, 318, 549, 877, 908
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	1020
Bsp143I	GATC	1 cut(s)	1029
BspACI	CCGC	4 cut(s)	303, 315, 962, 1004
BspANI	GGCC	5 cut(s)	195, 318, 549, 877, 908
BspCNI	CTCAG	4 cut(s)	280, 588, 646, 712
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	225, 257, 893
BspMI	ACCTGC	1 cut(s)	1122
BspT107I	GGYRCC	2 cut(s)	255, 891
BsrFI	RCCGGY	1 cut(s)	549
BsrGI	TGTACA	1 cut(s)	1020
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	790
BssMI	GATC	1 cut(s)	1029
BssNI	GRCGYC	1 cut(s)	256
Bst4CI	ACNGT	5 cut(s)	526, 816, 873, 945, 1123
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	1020
BstC8I	GCNNGC	4 cut(s)	237, 403, 547, 1063
BstDEI	CTNAG	6 cut(s)	267, 371, 530, 575, 654, 720
BstEII	GGTNACC	1 cut(s)	807
BstF5I	GGATG	4 cut(s)	281, 367, 518, 567
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	1032
BstMAI	GTCTC	2 cut(s)	60, 695
BstMBI	GATC	1 cut(s)	1029
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 472, 1010
BstNSI	RCATGY	3 cut(s)	239, 405, 690
BstPAI	GACNNNNGTC	1 cut(s)	833
BstPI	GGTNACC	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	790
BstV1I	GCAGC	3 cut(s)	299, 499, 915
BstXI	CCANNNNNNTGG	1 cut(s)	669
BsuRI	GGCC	5 cut(s)	195, 318, 549, 877, 908
BtsCI	GGATG	4 cut(s)	281, 367, 518, 567
BtsIMutI	CAGTG	4 cut(s)	42, 531, 821, 878
BveI	ACCTGC	1 cut(s)	1122
Cac8I	GCNNGC	4 cut(s)	237, 403, 547, 1063
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	3 cut(s)	194, 224, 502
Csp6I	GTAC	7 cut(s)	470, 602, 892, 981, 1021, 1092, 1135
CviAII	CATG	7 cut(s)	46, 236, 402, 687, 838, 896, 910
CviQI	GTAC	7 cut(s)	470, 602, 892, 981, 1021, 1092, 1135
DdeI	CTNAG	6 cut(s)	267, 371, 530, 575, 654, 720
DinI	GGCGCC	1 cut(s)	257
DpnI	GATC	1 cut(s)	1031
DpnII	GATC	1 cut(s)	1029
EaeI	YGGCCR	3 cut(s)	316, 547, 906
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	224, 502
Eco88I	CYCGRG	1 cut(s)	357
Eco91I	GGTNACC	1 cut(s)	807
EcoO65I	GGTNACC	1 cut(s)	807
EgeI	GGCGCC	1 cut(s)	257
EheI	GGCGCC	1 cut(s)	257
FaeI	CATG	7 cut(s)	49, 239, 405, 690, 841, 899, 913
FaqI	GGGAC	2 cut(s)	237, 773
FatI	CATG	7 cut(s)	45, 235, 401, 686, 837, 895, 909
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	5 cut(s)	313, 316, 513, 929, 1005
FokI	GGATG	4 cut(s)	268, 374, 505, 554
Fsp4HI	GCNGC	5 cut(s)	313, 316, 513, 929, 1005
FspBI	CTAG	1 cut(s)	1103
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	313, 316, 513, 929, 1005
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	5 cut(s)	195, 318, 549, 877, 908
HapII	CCGG	2 cut(s)	550, 792
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	256
Hin1II	CATG	7 cut(s)	49, 239, 405, 690, 841, 899, 913
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	2 cut(s)	368, 496
HinfI	GANTC	2 cut(s)	31, 378
HpaII	CCGG	2 cut(s)	550, 792
HphI	GGTGA	4 cut(s)	343, 373, 871, 1111
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	3 cut(s)	270, 578, 721
Hpy188III	TCNNGA	3 cut(s)	46, 359, 486
Hpy8I	GTNNAC	1 cut(s)	822
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	351, 607, 1121
HpyCH4III	ACNGT	5 cut(s)	526, 816, 873, 945, 1123
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 472, 1010
HpyF3I	CTNAG	6 cut(s)	267, 371, 530, 575, 654, 720
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	256
Hsp92II	CATG	7 cut(s)	49, 239, 405, 690, 841, 899, 913
HspAI	GCGC	1 cut(s)	256
KasI	GGCGCC	1 cut(s)	255
KpnI	GGTACC	1 cut(s)	895
Kzo9I	GATC	1 cut(s)	1029
LmnI	GCTCC	3 cut(s)	340, 794, 1083
Lsp1109I	GCAGC	3 cut(s)	299, 499, 915
LweI	GCATC	5 cut(s)	93, 357, 524, 713, 915
MaeI	CTAG	1 cut(s)	1103
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	552, 807
MalI	GATC	1 cut(s)	1031
MboI	GATC	1 cut(s)	1029
MboII	GAAGA	5 cut(s)	105, 319, 582, 874, 877
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	2 cut(s)	49, 952
MluNI	TGGCCA	1 cut(s)	908
Mly113I	GGCGCC	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	156, 1017
MnlI	CCTC	8 cut(s)	121, 284, 341, 348, 364, 715, 798, 888
Mox20I	TGGCCA	1 cut(s)	908
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	3 cut(s)	147, 1074, 1147
MslI	CAYNNNNRTG	1 cut(s)	975
Msp20I	TGGCCA	1 cut(s)	908
MspI	CCGG	2 cut(s)	550, 792
MspR9I	CCNGG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	1013
MwoI	GCNNNNNNNGC	3 cut(s)	255, 472, 1010
NarI	GGCGCC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	792
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	1 cut(s)	1029
NlaIII	CATG	7 cut(s)	49, 239, 405, 690, 841, 899, 913
NlaIV	GGNNCC	3 cut(s)	225, 257, 893
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	552
NspI	RCATGY	3 cut(s)	239, 405, 690
PaeI	GCATGC	2 cut(s)	239, 405
PagI	TCATGA	1 cut(s)	45
PctI	GAATGC	1 cut(s)	1013
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	314, 317, 514, 930, 1006
PleI	GAGTC	1 cut(s)	372
PluTI	GGCGCC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	372
PshAI	GACNNNNGTC	1 cut(s)	833
PspEI	GGTNACC	1 cut(s)	807
PspN4I	GGNNCC	3 cut(s)	225, 257, 893
PspPI	GGNCC	3 cut(s)	194, 224, 502
RsaI	GTAC	7 cut(s)	471, 603, 893, 982, 1022, 1093, 1136
RsaNI	GTAC	7 cut(s)	470, 602, 892, 981, 1021, 1092, 1135
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	3 cut(s)	147, 1074, 1147
SatI	GCNGC	5 cut(s)	313, 316, 513, 929, 1005
Sau3AI	GATC	1 cut(s)	1029
Sau96I	GGNCC	3 cut(s)	194, 224, 502
ScaI	AGTACT	1 cut(s)	1093
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	5 cut(s)	93, 357, 524, 713, 915
SfoI	GGCGCC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	224, 502
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	2 cut(s)	239, 405
Sse9I	AATT	2 cut(s)	49, 952
SsiI	CCGC	4 cut(s)	303, 315, 962, 1004
SspDI	GGCGCC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	1103
StyD4I	CCNGG	1 cut(s)	790
TaaI	ACNGT	5 cut(s)	526, 816, 873, 945, 1123
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	101, 947
TasI	AATT	2 cut(s)	49, 952
TatI	WGTACW	3 cut(s)	469, 1020, 1091
TauI	GCSGC	2 cut(s)	318, 1007
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	3 cut(s)	147, 1074, 1147
Tru9I	TTAA	3 cut(s)	147, 1074, 1147
TscAI	CASTG	4 cut(s)	42, 531, 821, 878
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	3 cut(s)	312, 512, 928
Tsp45I	GTSAC	1 cut(s)	552
TspDTI	ATGAA	3 cut(s)	62, 216, 555
TspRI	CASTG	4 cut(s)	42, 531, 821, 878
VpaK11BI	GGWCC	2 cut(s)	224, 502
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	3 cut(s)	239, 405, 690
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 669
XspI	CTAG	1 cut(s)	1103
ZrmI	AGTACT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.