Rmu_sc0004184.1_g000009

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004184.1
OG0012779
Physical Location & Seq
Reverse (-)
37569 .. 38949
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
atggaaatggagtctagtagttttctttgccccatcaaatacacccaacacagaaacaccaccaagaaattaactaaaccttcccggaaaatagagcccggcacttccatcgccccaaaaatcattcggatatctatgaccgatcacgacgccacggactcatccagcgatgaagaagagaccgagtactactttggtcgccggagagtgaagaaatatatcaacgaaatcagcatagaaaccgacttgagaactaatccggcgatcaccaacaatggccggaaaaggccggccttagagacacggccggctactaggcggccagcacagaagaactcttgtccaccggccaatggcggcggcaaccggaagttcagaggcgtacgacaacgtccttggggtaaatgggcggccgagattagagatcccggcaaacgtgtaagactgtggttggggaccttcgacacagctgaggaagccgctatggtgtacgataatgccgccatcaaactccgaggccctgatgctcaaacgaacttctcaccaccgcaaatggttgggaccgttgcggacaaggttgatgatcagaatattgtcaatgaagtcgagattgagccggaaacaacaccaaacgtgactgtctcggtttctggctatgattccggtgaggaaactcatcatctctcctcccctacctctgtcctacagttccgaactcatccaatcgaagaggccgagccagaactagagaagacagcactactatcaaaaccaaccgagaaagtaaatcatgttcgagagtgtggagtggaacacaatcaaattccaacggagttgcgtcaccgctcggaaacaacaccaaacgtgactgtctcggtttctggctatgattccggtgaggaaactcatcatctctcctcccctacctccgtcctacagttccaaactcatccaatcgaagaggccgagccaccgcaactagagaagacagcactaccatcaaaaccaaccgagaaagtaaatcatgttcgagactgtggagtggaacataatcaaattccaatggagttgcggtacatggaagaagacgcgttcaggttcccaacaccagagtcccccttgttcgagtcaccgcacttcttcgagtcgcccttcttcgacgactccgccgccgtggccggaccgctcctgtttgatgacttctgcgacttgtacgcgttcgccgactcgtccttttctgctcaggcgacgtcgtcgatgatgacgtgtcaaggagatgactgttttcaagacatttttggttcagaccctctagtggtcctctga

Protein Analysis

441

Amino Acids

49.43

Weight (kDa)

5.16

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 173 1.1e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1253
AccBSI CCGCTC 2 cut(s) 846, 1186
AccII CGCG 2 cut(s) 1091, 1217
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 6 cut(s) 277, 305, 320, 348, 411, 1176
AcsI RAATTY 2 cut(s) 822, 1056
AcyI GRCGYC 2 cut(s) 150, 1250
AfaI GTAC 5 cut(s) 188, 384, 491, 1076, 1214
AfiI CCNNNNNNNGG 2 cut(s) 353, 1315
AflIII ACRYGT 4 cut(s) 436, 1089, 1215, 1265
AgsI TTSAA 1 cut(s) 1289
AjiI CACGTC 1 cut(s) 1266
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 5 cut(s) 173, 293, 646, 877, 1026
AlwI GGATC 1 cut(s) 419
ApoI RAATTY 2 cut(s) 822, 1056
AspS9I GGNCC 5 cut(s) 456, 518, 561, 1181, 1318
AsuC2I CCSGG 3 cut(s) 85, 99, 429
AsuHPI GGTGA 6 cut(s) 259, 534, 677, 833, 908, 1122
AvaII GGWCC 4 cut(s) 456, 561, 1181, 1318
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 3 cut(s) 758, 992, 1092
BbvCI CCTCAGC 1 cut(s) 471
BccI CCATC 4 cut(s) 41, 116, 512, 1006
BceAI ACGGC 2 cut(s) 320, 1157
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 85, 99, 429
BcoDI GTCTC 5 cut(s) 173, 293, 646, 877, 1026
BfaI CTAG 5 cut(s) 15, 315, 746, 980, 1313
BfmI CTRYAG 2 cut(s) 704, 935
BglI GCCNNNNNGGC 1 cut(s) 1175
BisI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 1170
BlsI GCNGC 7 cut(s) 321, 359, 362, 412, 481, 502, 1171
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 85, 99, 429
Bme18I GGWCC 4 cut(s) 456, 561, 1181, 1318
BmgBI CACGTC 1 cut(s) 1266
BmgT120I GGNCC 5 cut(s) 456, 518, 561, 1181, 1318
BmiI GGNNCC 3 cut(s) 457, 562, 1100
BmrFI CCNGG 3 cut(s) 85, 99, 429
BmsI GCATC 1 cut(s) 514
BpiI GAAGAC 3 cut(s) 758, 992, 1092
Bpu10I CCTNAGC 2 cut(s) 471, 1242
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 3 cut(s) 85, 99, 429
BsaHI GRCGYC 2 cut(s) 150, 1250
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 153, 395, 514, 1173
BsaWI WCCGGW 3 cut(s) 366, 662, 893
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 1315
Bse118I RCCGGY 3 cut(s) 289, 307, 346
BseDI CCNNGG 4 cut(s) 153, 395, 514, 1173
BseGI GGATG 3 cut(s) 161, 718, 949
BseLI CCNNNNNNNGG 2 cut(s) 353, 1315
BseMII CTCAG 2 cut(s) 462, 1256
BseRI GAGGAG 2 cut(s) 676, 907
BseX3I CGGCCG 2 cut(s) 305, 411
Bsh1236I CGCG 2 cut(s) 1091, 1217
Bsh1285I CGRYCG 2 cut(s) 308, 414
BsiEI CGRYCG 2 cut(s) 308, 414
BsiWI CGTACG 1 cut(s) 382
BslFI GGGAC 3 cut(s) 469, 574, 1099
BslI CCNNNNNNNGG 2 cut(s) 353, 1315
BsmAI GTCTC 5 cut(s) 173, 293, 646, 877, 1026
BsmFI GGGAC 3 cut(s) 469, 574, 1099
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 142, 264, 424, 583
BspCNI CTCAG 2 cut(s) 463, 1255
BspFNI CGCG 2 cut(s) 1091, 1217
BspLI GGNNCC 3 cut(s) 457, 562, 1100
BspPI GGATC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 173
BsrBI CCGCTC 2 cut(s) 846, 1186
BsrFI RCCGGY 3 cut(s) 289, 307, 346
BssAI RCCGGY 3 cut(s) 289, 307, 346
BssECI CCNNGG 4 cut(s) 153, 395, 514, 1173
BssMI GATC 4 cut(s) 142, 264, 424, 583
BssNI GRCGYC 2 cut(s) 150, 1250
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 8 cut(s) 447, 565, 640, 708, 871, 939, 1037, 1283
Bst6I CTCTTC 3 cut(s) 171, 723, 954
BstACI GRCGYC 2 cut(s) 150, 1250
BstC8I GCNNGC 3 cut(s) 291, 309, 324
BstDEI CTNAG 3 cut(s) 295, 471, 1242
BstDSI CCRYGG 2 cut(s) 153, 1173
BstF5I GGATG 3 cut(s) 161, 718, 949
BstFNI CGCG 2 cut(s) 1091, 1217
BstKTI GATC 4 cut(s) 145, 267, 427, 586
BstMAI GTCTC 5 cut(s) 173, 293, 646, 877, 1026
BstMBI GATC 4 cut(s) 142, 264, 424, 583
BstMCI CGRYCG 2 cut(s) 308, 414
BstMWI GCNNNNNNNGC 2 cut(s) 476, 1175
BstSCI CCNGG 3 cut(s) 83, 97, 427
BstSFI CTRYAG 2 cut(s) 704, 935
BstUI CGCG 2 cut(s) 1091, 1217
BstV2I GAAGAC 3 cut(s) 758, 992, 1092
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZI CGGCCG 2 cut(s) 305, 411
BtgI CCRYGG 2 cut(s) 153, 1173
BtgZI GCGATG 2 cut(s) 94, 183
BtrI CACGTC 1 cut(s) 1266
BtsCI GGATG 3 cut(s) 161, 718, 949
Cac8I GCNNGC 3 cut(s) 291, 309, 324
Cfr10I RCCGGY 3 cut(s) 289, 307, 346
Cfr13I GGNCC 5 cut(s) 456, 518, 561, 1181, 1318
CpoI CGGWCCG 1 cut(s) 1181
CseI GACGC 3 cut(s) 158, 827, 1097
Csp6I GTAC 5 cut(s) 187, 383, 490, 1075, 1213
CspI CGGWCCG 1 cut(s) 1181
CviAII CATG 3 cut(s) 791, 1025, 1078
CviQI GTAC 5 cut(s) 187, 383, 490, 1075, 1213
DdeI CTNAG 3 cut(s) 295, 471, 1242
DpnI GATC 4 cut(s) 144, 266, 426, 585
DpnII GATC 4 cut(s) 142, 264, 424, 583
EaeI YGGCCR 6 cut(s) 277, 305, 320, 348, 411, 1176
EagI CGGCCG 2 cut(s) 305, 411
Eam1104I CTCTTC 3 cut(s) 171, 723, 954
EarI CTCTTC 3 cut(s) 171, 723, 954
EciI GGCGGA 1 cut(s) 1156
EclXI CGGCCG 2 cut(s) 305, 411
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 4 cut(s) 456, 561, 1181, 1318
Eco52I CGGCCG 2 cut(s) 305, 411
EcoO109I RGGNCCY 2 cut(s) 456, 518
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 3 cut(s) 794, 1028, 1081
FaqI GGGAC 3 cut(s) 469, 574, 1099
FatI CATG 3 cut(s) 790, 1024, 1077
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 1170
FokI GGATG 3 cut(s) 148, 705, 936
FriOI GRGCYC 1 cut(s) 99
FseI GGCCGGCC 1 cut(s) 293
Fsp4HI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 1170
FspBI CTAG 5 cut(s) 15, 315, 746, 980, 1313
GluI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 1170
HgaI GACGC 3 cut(s) 158, 827, 1097
Hin1I GRCGYC 2 cut(s) 150, 1250
Hin1II CATG 3 cut(s) 794, 1028, 1081
HinfI GANTC 9 cut(s) 11, 158, 659, 890, 1112, 1127, 1145, 1163, 1226
HphI GGTGA 6 cut(s) 259, 534, 677, 833, 908, 1122
Hpy166II GTNNAC 2 cut(s) 344, 490
Hpy188I TCNGA 8 cut(s) 129, 377, 515, 588, 713, 850, 1306, 1325
Hpy188III TCNNGA 5 cut(s) 146, 607, 797, 1031, 1289
Hpy8I GTNNAC 2 cut(s) 344, 490
Hpy99I CGWCG 5 cut(s) 152, 1163, 1252, 1255, 1258
HpyAV CCTTC 3 cut(s) 90, 469, 1162
HpyCH4III ACNGT 8 cut(s) 447, 565, 640, 708, 871, 939, 1037, 1283
HpyCH4IV ACGT 6 cut(s) 391, 436, 633, 864, 1250, 1265
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 1175
HpyF3I CTNAG 3 cut(s) 295, 471, 1242
HpySE526I ACGT 6 cut(s) 391, 436, 633, 864, 1250, 1265
Hsp92I GRCGYC 2 cut(s) 150, 1250
Hsp92II CATG 3 cut(s) 794, 1028, 1081
KroI GCCGGC 2 cut(s) 289, 307
KroNI GCCGGC 2 cut(s) 291, 309
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 142, 264, 424, 583
LmnI GCTCC 1 cut(s) 1191
LweI GCATC 1 cut(s) 514
MaeI CTAG 5 cut(s) 15, 315, 746, 980, 1313
MaeII ACGT 6 cut(s) 391, 436, 633, 864, 1250, 1265
MaeIII GTNAC 4 cut(s) 634, 839, 865, 1128
MalI GATC 4 cut(s) 144, 266, 426, 585
MbiI CCGCTC 2 cut(s) 846, 1186
MboI GATC 4 cut(s) 142, 264, 424, 583
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 68, 822, 1056
MluI ACGCGT 2 cut(s) 1089, 1215
MlyI GAGTC 7 cut(s) 20, 152, 1121, 1136, 1154, 1157, 1220
MmeI TCCRAC 1 cut(s) 851
MroNI GCCGGC 2 cut(s) 289, 307
MseI TTAA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 3 cut(s) 85, 99, 429
MvnI CGCG 2 cut(s) 1091, 1217
MwoI GCNNNNNNNGC 2 cut(s) 476, 1175
NaeI GCCGGC 2 cut(s) 291, 309
NciI CCSGG 3 cut(s) 85, 99, 429
NdeII GATC 4 cut(s) 142, 264, 424, 583
NgoMIV GCCGGC 2 cut(s) 289, 307
NlaIII CATG 3 cut(s) 794, 1028, 1081
NlaIV GGNNCC 3 cut(s) 457, 562, 1100
NmeAIII GCCGAG 3 cut(s) 439, 760, 991
NmuCI GTSAC 4 cut(s) 634, 839, 865, 1128
PcsI WCGNNNNNNNCGW 4 cut(s) 732, 963, 1221, 1262
PdiI GCCGGC 2 cut(s) 291, 309
PfeI GAWTC 2 cut(s) 659, 890
Pfl23II CGTACG 1 cut(s) 382
PflFI GACNNNGTC 2 cut(s) 390, 1252
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 7 cut(s) 321, 359, 362, 412, 481, 502, 1171
PleI GAGTC 7 cut(s) 19, 152, 1120, 1135, 1153, 1157, 1220
PpsI GAGTC 7 cut(s) 19, 152, 1120, 1135, 1153, 1157, 1220
PpuMI RGGWCCY 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 456
PspLI CGTACG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 457, 562, 1100
PspPI GGNCC 5 cut(s) 456, 518, 561, 1181, 1318
PspPPI RGGWCCY 1 cut(s) 456
PsrI GAACNNNNNNTAC 4 cut(s) 777, 809, 1011, 1043
PsuI RGATCY 1 cut(s) 424
PsyI GACNNNGTC 2 cut(s) 390, 1252
PvuII CAGCTG 1 cut(s) 470
RigI GGCCGGCC 1 cut(s) 293
RsaI GTAC 5 cut(s) 188, 384, 491, 1076, 1214
RsaNI GTAC 5 cut(s) 187, 383, 490, 1075, 1213
Rsr2I CGGWCCG 1 cut(s) 1181
RsrII CGGWCCG 1 cut(s) 1181
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 1170
Sau3AI GATC 4 cut(s) 142, 264, 424, 583
Sau96I GGNCC 5 cut(s) 456, 518, 561, 1181, 1318
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 7 cut(s) 20, 152, 1121, 1136, 1154, 1157, 1220
ScrFI CCNGG 3 cut(s) 85, 99, 429
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 2 cut(s) 704, 935
SinI GGWCC 4 cut(s) 456, 561, 1181, 1318
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 3 cut(s) 68, 822, 1056
SspI AATATT 1 cut(s) 592
SspMI CTAG 5 cut(s) 15, 315, 746, 980, 1313
StyD4I CCNGG 3 cut(s) 83, 97, 427
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 8 cut(s) 447, 565, 640, 708, 871, 939, 1037, 1283
TaiI ACGT 6 cut(s) 394, 439, 636, 867, 1253, 1268
TaqII GACCGA 2 cut(s) 155, 197
TasI AATT 3 cut(s) 68, 822, 1056
TatI WGTACW 1 cut(s) 186
TauI GCSGC 7 cut(s) 322, 360, 363, 413, 482, 503, 1172
TfiI GAWTC 2 cut(s) 659, 890
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 4 cut(s) 634, 839, 865, 1128
Tsp45I GTSAC 4 cut(s) 634, 839, 865, 1128
TspDTI ATGAA 2 cut(s) 186, 615
TspGWI ACGGA 3 cut(s) 170, 845, 919
Tth111I GACNNNGTC 2 cut(s) 390, 1252
VpaK11BI GGWCC 4 cut(s) 456, 561, 1181, 1318
XapI RAATTY 2 cut(s) 822, 1056
XspI CTAG 5 cut(s) 15, 315, 746, 980, 1313
ZraI GACGTC 1 cut(s) 1251
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.