Rmu_sc0004248.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004248.1
OG0016955
Physical Location & Seq
Forward (+)
63400 .. 64158
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004248.1_g000008.1.cds

Sequence Viewer

Length: 411 bp
atgtctatgtggaccaggttgcagcctgcctatgttgcaaacatgtggaatgaggctctaaacaagcagaacaagatgagtgggtgtacagtgatggcaaatctacaacctgcatgtgttgctttcattcttgcaatgtataaagaagctgtgatttttggtcctatttctaactccattcaagttactgaattcactattcgtgatgcgtacatgctaaagatttttgaggataaccagacccgtttgccaagttggtataacataggggatgaaaagctcccattctgccagatccttggtgaatatctgatggaactgcctgaatataacaccatagagccatatgcaaacatgaatgagcactgcccctccctacctcctacttatagcagacctagtcgatgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.7

Weight (kDa)

5.09

Isoelectric Point (pI)

74.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 2 cut(s) 88, 212
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 149, 280
AluI AGCT 2 cut(s) 149, 280
Alw21I GWGCWC 1 cut(s) 366
AlwI GGATC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 12, 161
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 2 cut(s) 12, 161
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 88, 307
BciT130I CCWGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 118
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 12, 161
BmgT120I GGNCC 2 cut(s) 12, 161
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 2 cut(s) 196, 395
BsaJI CCNNGG 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 86
Bsp143I GATC 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 35, 119
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 3 cut(s) 46, 117, 217
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 294
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 2 cut(s) 96, 364
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 12, 161
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 2 cut(s) 87, 211
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 4 cut(s) 43, 114, 214, 355
CviJI RGCY 5 cut(s) 25, 56, 149, 280, 343
CviKI_1 RGCY 5 cut(s) 25, 56, 149, 280, 343
CviQI GTAC 2 cut(s) 87, 211
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 12, 161
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 4 cut(s) 46, 117, 217, 358
FatI CATG 4 cut(s) 42, 113, 213, 354
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 399
GluI GCNGC 1 cut(s) 23
Hin1II CATG 4 cut(s) 46, 117, 217, 358
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 12, 87
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 12, 87
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 22, 38, 113, 134, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 119
Hsp92II CATG 4 cut(s) 46, 117, 217, 358
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 6 cut(s) 28, 39, 123, 251, 305, 336
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 2 cut(s) 196, 395
MabI ACCWGGT 1 cut(s) 14
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 1 cut(s) 191
MnlI CCTC 4 cut(s) 46, 223, 382, 390
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 35, 119
NdeI CATATG 1 cut(s) 346
NdeII GATC 1 cut(s) 294
NlaIII CATG 4 cut(s) 46, 117, 217, 358
NspI RCATGY 3 cut(s) 46, 117, 217
PciI ACATGT 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 399
PkrI GCNGC 1 cut(s) 24
PscI ACATGT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspPI GGNCC 2 cut(s) 12, 161
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 399
RsaI GTAC 2 cut(s) 88, 212
RsaNI GTAC 2 cut(s) 87, 211
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 12, 161
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 366
SetI ASST 6 cut(s) 20, 112, 151, 282, 382, 400
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 2 cut(s) 196, 395
SinI GGWCC 2 cut(s) 12, 161
Sse9I AATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 403
TasI AATT 1 cut(s) 191
TatI WGTACW 1 cut(s) 86
TscAI CASTG 2 cut(s) 96, 371
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 115, 288, 371
TspRI CASTG 2 cut(s) 96, 371
Tth111I GACNNNGTC 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 12, 161
XapI RAATTY 1 cut(s) 191
XceI RCATGY 3 cut(s) 46, 117, 217
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.