Rh1CG050700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016955
Physical Location & Seq
Reverse (-)
9337358 .. 9338011
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG050700.1

Sequence Viewer

Length: 339 bp
ATGTCTATGTGGACCAGGTTGCAGCCTGCCTATGCTGCAAACATGTGGAATGAGGCTCTAAACAAGAGGGTAGGCACTGAGATTCGTGATGCGTACATGCTAAAGATTTTTGACGATAACCAGACCCGTTTGCCAAGTTGGTGTAACATAGGGGATGAAAAGCTCCCATTCTACCAGATCCTTGGTGAATATCTAATGGAACTACCTGAATATAACACCATAGAGCCATATGCAAACATGAATGAGCACTGTGAATCACAAAGACGACACGAAGAGGATTTGCTGGACCCAGAACCCATCTTGAAAGAACCCAGAAACTGCAAAAGAAGATTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.45

Weight (kDa)

5.04

Isoelectric Point (pI)

84.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 172
AfaI GTAC 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 22, 35
AspS9I GGNCC 2 cut(s) 12, 286
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 2 cut(s) 12, 286
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 22, 34
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 16
BisI GCNGC 2 cut(s) 23, 36
BlsI GCNGC 2 cut(s) 24, 37
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 12, 286
BmgT120I GGNCC 2 cut(s) 12, 286
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 22, 34
BsiHKAI GWGCWC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 2 cut(s) 46, 100
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 22, 34
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 177
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 75, 247
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 12, 286
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 43, 97, 238
CviJI RGCY 4 cut(s) 25, 56, 163, 226
CviKI_1 RGCY 4 cut(s) 25, 56, 163, 226
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 12, 286
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 46, 100, 241
FatI CATG 3 cut(s) 42, 96, 237
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 23, 36
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 23, 36
GluI GCNGC 2 cut(s) 23, 36
Hin1II CATG 3 cut(s) 46, 100, 241
HinfI GANTC 2 cut(s) 82, 254
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 86, 301
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 22, 38, 233, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 3 cut(s) 46, 100, 241
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 8 cut(s) 28, 39, 134, 188, 219, 269, 303, 325
Lsp1109I GCAGC 2 cut(s) 22, 34
LweI GCATC 1 cut(s) 79
MabI ACCWGGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 284, 339
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 3 cut(s) 46, 60, 268
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 229
NdeII GATC 1 cut(s) 177
NlaIII CATG 3 cut(s) 46, 100, 241
NlaIV GGNNCC 1 cut(s) 288
NspI RCATGY 2 cut(s) 46, 100
PciI ACATGT 1 cut(s) 42
PfeI GAWTC 2 cut(s) 82, 254
PkrI GCNGC 2 cut(s) 24, 37
PscI ACATGT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 12, 286
PstNI CAGNNNCTG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SatI GCNGC 2 cut(s) 23, 36
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 12, 286
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 249
SetI ASST 3 cut(s) 20, 165, 208
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 2 cut(s) 12, 286
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 251
TfiI GAWTC 2 cut(s) 82, 254
TscAI CASTG 2 cut(s) 82, 254
TseI GCWGC 2 cut(s) 22, 35
TspDTI ATGAA 2 cut(s) 171, 254
TspRI CASTG 2 cut(s) 82, 254
VpaK11BI GGWCC 2 cut(s) 12, 286
XceI RCATGY 2 cut(s) 46, 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.