Rorug02G0419900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016955
Physical Location & Seq
Forward (+)
53936457 .. 53940853
4397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0419900.1

Sequence Viewer

Length: 855 bp
ATGGAAGATAGGTCTTGGATGCATGCGGATAAAAGATCTTTAGCTTATGAGTTAGGGGTGGGAAGTTTCTTGAAGTTTGCTTTAGAAAATGCGAAAAATCCTAACAATGTCGCTTGTCCATGTTCAAAATGTGGGAATATGGATTTCTTTCCCATCTCTGTTATTAAGACTCATCTGTATTATAATGGGGTTGATGAAACTTATAAGGTGTGGAAGTGGCATGGGGAGAAAGAAGATACGTCTTCGGGTAGTAGTGAAGATTCAGCCTCAGGTTCGATTGAATCTGAATCAGTGGATGAGAATGTTGGGGTAGATTGTACAATGGATAGGTCTGATGATGACAATGAGTTTTCATCAGAGTGCAATGATTTTAAAGAGTTTGTTGAGGATGCAAATAAGCCATTGTACCCTGGCTGTATAATGGTGCATTCAAAGGCTGTCTCAAATCCAACAAAGAAGACTTCAAAAACACATAAAGTAAGGAAGTCGAAGTCTTCAAAGACCAAGGATAGGGAATCTGTTTCAAATAATTCTGCTGCAAGTGTGAGTAAATCAAAGAAGCGCGGGAAGAAGAAGACGCAGGAGGAGGATGATGGATGTACTGGAGGGCTTAAGTTGCTCAAGCGTCACCGCGTTACAATGTCAAGGATGACAACGAGCAGGATTCTAAAGAAGAGACTTATAGTCGAGTTTGATAAGAATGGGGATCCAATAGGGAATAATGCAGATGCATTGCAATCCTACATCGGTGTTTTGGCAAGGACTAATATCCCAATTTCAATAGTATCTTGGCCTAAAGTATCGAAGACAAAAAAAAGCAATCTTTGGGAGACCGTTCTGGTAAGGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.72

Weight (kDa)

8.9

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 4 - 76 2.2e-19 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 183, 204
AccII CGCG 2 cut(s) 564, 633
AciI CCGC 3 cut(s) 26, 564, 631
AclWI GGATC 2 cut(s) 701, 714
AfaI GTAC 3 cut(s) 319, 407, 601
AfiI CCNNNNNNNGG 1 cut(s) 510
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 8 cut(s) 73, 126, 281, 432, 465, 498, 525, 780
AhdI GACNNNNNGTC 1 cut(s) 683
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 3 cut(s) 445, 670, 824
AlwI GGATC 2 cut(s) 701, 714
AoxI GGCC 1 cut(s) 791
ApeKI GCWGC 1 cut(s) 536
AspLEI GCGC 1 cut(s) 564
AsuHPI GGTGA 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 268
BamHI GGATCC 1 cut(s) 706
BbsI GAAGAC 5 cut(s) 234, 464, 486, 581, 812
BbvI GCAGC 1 cut(s) 523
BccI CCATC 2 cut(s) 161, 587
BciT130I CCWGG 1 cut(s) 411
BcoDI GTCTC 3 cut(s) 445, 670, 824
BfrI CTTAAG 1 cut(s) 611
BglII AGATCT 1 cut(s) 35
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 1 cut(s) 411
BmeRI GACNNNNNGTC 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 708
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 3 cut(s) 9, 379, 718
BpiI GAAGAC 5 cut(s) 234, 464, 486, 581, 812
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 824
BsaJI CCNNGG 2 cut(s) 409, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse1I ACTGG 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 2 cut(s) 370, 731
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 409, 504
BseGI GGATG 6 cut(s) 24, 301, 394, 595, 602, 654
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMI GCAATG 2 cut(s) 370, 731
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 564, 633
BshFI GGCC 1 cut(s) 793
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 3 cut(s) 445, 670, 824
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 793
Bso31I GGTCTC 1 cut(s) 824
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 2 cut(s) 35, 706
BspACI CCGC 3 cut(s) 26, 564, 631
BspANI GGCC 1 cut(s) 793
BspCNI CTCAG 1 cut(s) 281
BspFNI CGCG 2 cut(s) 564, 633
BspLI GGNNCC 1 cut(s) 708
BspPI GGATC 2 cut(s) 701, 714
BspTI CTTAAG 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 370, 731
BsrGI TGTACA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 2 cut(s) 409, 504
BssMI GATC 2 cut(s) 35, 706
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 1 cut(s) 668
BstAFI CTTAAG 1 cut(s) 611
BstAUI TGTACA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 6 cut(s) 24, 301, 394, 595, 602, 654
BstFNI CGCG 2 cut(s) 564, 633
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 2 cut(s) 38, 709
BstMAI GTCTC 3 cut(s) 445, 670, 824
BstMBI GATC 2 cut(s) 35, 706
BstMWI GCNNNNNNNGC 1 cut(s) 616
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 2 cut(s) 564, 633
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 5 cut(s) 234, 464, 486, 581, 812
BstX2I RGATCY 2 cut(s) 35, 706
BstYI RGATCY 2 cut(s) 35, 706
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 793
BtsCI GGATG 6 cut(s) 24, 301, 394, 595, 602, 654
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 564
CseI GACGC 2 cut(s) 586, 614
Csp6I GTAC 3 cut(s) 318, 406, 600
CviAII CATG 3 cut(s) 23, 120, 221
CviJI RGCY 7 cut(s) 44, 266, 400, 414, 437, 610, 793
CviKI_1 RGCY 7 cut(s) 44, 266, 400, 414, 437, 610, 793
CviQI GTAC 3 cut(s) 318, 406, 600
DdeI CTNAG 1 cut(s) 268
DpnI GATC 2 cut(s) 37, 708
DpnII GATC 2 cut(s) 35, 706
DraI TTTAAA 1 cut(s) 373
DriI GACNNNNNGTC 1 cut(s) 683
Eam1104I CTCTTC 1 cut(s) 668
Eam1105I GACNNNNNGTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 504
EcoT22I ATGCAT 2 cut(s) 24, 733
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 3 cut(s) 26, 123, 224
FatI CATG 3 cut(s) 22, 119, 220
FauI CCCGC 1 cut(s) 557
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 6 cut(s) 31, 308, 401, 602, 609, 661
Fsp4HI GCNGC 1 cut(s) 537
GlaI GCGC 1 cut(s) 563
GluI GCNGC 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 793
HgaI GACGC 2 cut(s) 586, 614
HhaI GCGC 1 cut(s) 564
Hin1II CATG 3 cut(s) 26, 123, 224
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HinfI GANTC 6 cut(s) 169, 260, 281, 287, 515, 664
HphI GGTGA 1 cut(s) 620
Hpy188I TCNGA 3 cut(s) 286, 334, 358
Hpy188III TCNNGA 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 8 cut(s) 22, 363, 392, 427, 539, 725, 731, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 616
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 3 cut(s) 26, 123, 224
HspAI GCGC 1 cut(s) 562
Kzo9I GATC 2 cut(s) 35, 706
LpnPI CCDG 7 cut(s) 255, 396, 423, 566, 588, 646, 824
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 3 cut(s) 9, 379, 718
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 626, 634
MalI GATC 2 cut(s) 37, 708
MboI GATC 2 cut(s) 35, 706
MflI RGATCY 2 cut(s) 35, 706
MluCI AATT 2 cut(s) 529, 774
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 5 cut(s) 277, 379, 577, 580, 599
Mph1103I ATGCAT 2 cut(s) 24, 733
MseI TTAA 4 cut(s) 165, 372, 612, 853
MslI CAYNNNNRTG 1 cut(s) 358
MspCI CTTAAG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 564, 633
MwoI GCNNNNNNNGC 1 cut(s) 616
NdeII GATC 2 cut(s) 35, 706
NlaIII CATG 3 cut(s) 26, 123, 224
NlaIV GGNNCC 1 cut(s) 708
NmuCI GTSAC 1 cut(s) 626
NsiI ATGCAT 2 cut(s) 24, 733
NspI RCATGY 1 cut(s) 26
PaeI GCATGC 1 cut(s) 26
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 5 cut(s) 260, 281, 287, 515, 664
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PsiI TTATAA 2 cut(s) 183, 204
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 708
PsuI RGATCY 2 cut(s) 35, 706
RsaI GTAC 3 cut(s) 319, 407, 601
RsaNI GTAC 3 cut(s) 318, 406, 600
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 4 cut(s) 165, 372, 612, 853
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 2 cut(s) 35, 706
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 411
SetI ASST 6 cut(s) 14, 46, 210, 242, 274, 332
SfaNI GCATC 3 cut(s) 9, 379, 718
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 2 cut(s) 611, 620
SmoI CTYRAG 2 cut(s) 611, 620
SphI GCATGC 1 cut(s) 26
Sse9I AATT 2 cut(s) 529, 774
SsiI CCGC 3 cut(s) 26, 564, 631
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 835
TaiI ACGT 1 cut(s) 242
TaqI TCGA 4 cut(s) 275, 488, 687, 803
TasI AATT 2 cut(s) 529, 774
TatI WGTACW 2 cut(s) 317, 599
TfiI GAWTC 5 cut(s) 260, 281, 287, 515, 664
Tru1I TTAA 4 cut(s) 165, 372, 612, 853
Tru9I TTAA 4 cut(s) 165, 372, 612, 853
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 2 cut(s) 210, 342
TspRI CASTG 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 611
XceI RCATGY 1 cut(s) 26
Zsp2I ATGCAT 2 cut(s) 24, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.