Rh1DG002600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016955
Physical Location & Seq
Reverse (-)
450542 .. 455810
5269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG002600.1

Sequence Viewer

Length: 630 bp
ATGGTGAAGCATTTCAGCCACCGGCATGAGTTGGAGTTGTGCCCAACAATGCCTCAACCAGTGCATGAAGATGATGAAGCATTGATTTGCTCCGTCTGCGAGTATGAGCTAGACCTCCACCAATCAGGTGAAGCTGTTTCTGTTGTTTCTGTCATGTCTATGTGGACCAGGTTGCAACTTGCCTATGCTGCAAACATGTGGAATGAGGCTCTAAACAAGAGGGTAGGCACTGAGTGTACTCAACATTTTCAAGTTGAGTGGGTGTATAGTGATGGCAAATCTACAACCTGTGTTGCTTTCATTCTTGCAATGTATAAAGAAGCTGGGATTTTTGGTCCTATTTCTAGCTCCATTCGAGTTACTGAATTCACTATTCGTGATGCGTACATGCTAAAGATTTTTGAGGATAACCAGACCTGTTTGCCAAGTTGGTGTAACATAGGGGATGAAAAACTCCCATTCTGCCAGATCCTTGGTGAATATCTGATGGAACTGCCTGAATATAACACCATAGAGCCATATGCAAACATGAATGAGCACTGTGAATCACAAAGACGACACGAAGAGGATTTGCTGGACCCAGAACCCATCTTGAAAGAACCCAGAAACTGCAGAAGAAGATTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.29

Weight (kDa)

4.89

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 2 cut(s) 238, 386
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 251, 595
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 4 cut(s) 109, 134, 323, 348
AluI AGCT 4 cut(s) 109, 134, 323, 348
Alw21I GWGCWC 1 cut(s) 540
AlwI GGATC 1 cut(s) 463
AlwNI CAGNNNCTG 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 165, 335, 577
AsuHPI GGTGA 3 cut(s) 16, 140, 488
AvaII GGWCC 3 cut(s) 165, 335, 577
BaeGI GKGCMC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 175
BccI CCATC 3 cut(s) 266, 481, 596
BciT130I CCWGG 1 cut(s) 169
BfaI CTAG 2 cut(s) 110, 345
BfmI CTRYAG 1 cut(s) 610
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 3 cut(s) 165, 335, 577
BmgT120I GGNCC 3 cut(s) 165, 335, 577
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 472
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 44, 540
Bsp143I GATC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 579
BspMAI CTGCAG 1 cut(s) 614
BspPI GGATC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 1 cut(s) 468
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 2 cut(s) 96, 188
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 2 cut(s) 199, 391
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 468
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 1 cut(s) 468
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 66, 228, 538
CaiI CAGNNNCTG 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 3 cut(s) 165, 335, 577
CsiI ACCWGGT 1 cut(s) 167
Csp6I GTAC 2 cut(s) 237, 385
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 6 cut(s) 26, 65, 154, 196, 388, 529
CviJI RGCY 7 cut(s) 18, 109, 134, 209, 323, 348, 517
CviKI_1 RGCY 7 cut(s) 18, 109, 134, 209, 323, 348, 517
CviQI GTAC 2 cut(s) 237, 385
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 472
Eco47I GGWCC 3 cut(s) 165, 335, 577
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 6 cut(s) 29, 68, 157, 199, 391, 532
FatI CATG 6 cut(s) 25, 64, 153, 195, 387, 528
FauNDI CATATG 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 110, 345
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 327
HapII CCGG 1 cut(s) 22
Hin1II CATG 6 cut(s) 29, 68, 157, 199, 391, 532
HinfI GANTC 1 cut(s) 545
HpaII CCGG 1 cut(s) 22
HphI GGTGA 3 cut(s) 16, 140, 488
Hpy166II GTNNAC 2 cut(s) 165, 237
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 2 cut(s) 377, 592
Hpy8I GTNNAC 2 cut(s) 165, 237
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4V TGCA 6 cut(s) 64, 175, 191, 308, 524, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 188
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 6 cut(s) 29, 68, 157, 199, 391, 532
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 95, 353
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 370
MabI ACCWGGT 1 cut(s) 167
MaeI CTAG 2 cut(s) 110, 345
MaeIII GTNAC 2 cut(s) 358, 434
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 4 cut(s) 80, 575, 627, 630
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 44, 540
MluCI AATT 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 6 cut(s) 63, 125, 199, 213, 397, 559
MroXI GAANNNNTTC 1 cut(s) 11
MslI CAYNNNNRTG 3 cut(s) 24, 69, 158
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 96, 188
NdeI CATATG 1 cut(s) 520
NdeII GATC 1 cut(s) 468
NlaIII CATG 6 cut(s) 29, 68, 157, 199, 391, 532
NlaIV GGNNCC 1 cut(s) 579
NspI RCATGY 2 cut(s) 199, 391
PciI ACATGT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 1 cut(s) 190
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 3 cut(s) 165, 335, 577
PstI CTGCAG 1 cut(s) 614
PstNI CAGNNNCTG 1 cut(s) 609
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 2 cut(s) 238, 386
RsaNI GTAC 2 cut(s) 237, 385
RseI CAYNNNNRTG 3 cut(s) 24, 69, 158
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 3 cut(s) 165, 335, 577
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 2 cut(s) 44, 540
SetI ASST 9 cut(s) 111, 117, 130, 136, 173, 290, 325, 350, 419
SexAI ACCWGGT 1 cut(s) 167
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 3 cut(s) 165, 335, 577
SmiMI CAYNNNNRTG 3 cut(s) 24, 69, 158
Sse9I AATT 1 cut(s) 365
SspMI CTAG 2 cut(s) 110, 345
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 542
TaqI TCGA 1 cut(s) 355
TasI AATT 1 cut(s) 365
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 1 cut(s) 545
TscAI CASTG 3 cut(s) 66, 235, 545
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 5 cut(s) 81, 90, 289, 462, 545
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 3 cut(s) 66, 235, 545
VpaK11BI GGWCC 3 cut(s) 165, 335, 577
XapI RAATTY 1 cut(s) 365
XceI RCATGY 2 cut(s) 199, 391
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 2 cut(s) 110, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.