Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016955

Physical Location & Seq

Genomic Coordinates Reverse (-)

1132760 .. 1138028

Gene Structure 5269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTGAAGCATTTCAGCCACCGGCATGAGTTGGAGTTGTGCCCAACAATGCCTCAACCAGTGCATGAAGATGATGAAGCATTGATTTGCTCCGTCTGCGAGTATGAGCTAGACCTCCACCAATCAGGTGAAGCTGTTTCTGTTGTTTCTGTCATGTCTATGTGGACCAGGTTGCAACTTGCCTATGCTGCAAACATGTGGAATGAGGCTCTAAACAAGAGGGTAGGCACTGAGATTCGTGATGCGTACATGCTAAAGATTTTTGAGGATAACCAGACCTGTTTGCCAAGTTGGTGTAACATAGGGGATGAAAAACTCCCATTCTGCCAGATCCTTGGTGAATATCTGATGGAACTGCCTGAATATAACACCATAGAGCCATATGCAAACATGAATGAGCACTGTGAATCACAAAGACGACACGAAGAGGATTTGCTGGACCCAGAACCCATCTTGAAAGAACCCAGAAACTGCAGAAGAAGATTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

19.15

Weight (kDa)

4.82

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016955)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G261600_v2.0.a1
rosa_multiflora	Rmu_sc0000321.1_g000009 Rmu_sc0004248.1_g000008
rosa_roxburghii	Rroxscaffold_5G00373230
rosa_rugosa	Rorug02G0419900
rosa_samantha	Rh1AG026200 Rh1AG186900 Rh1CG007500 Rh1CG050700 Rh1CG057700 Rh1CG172400 Rh1DG002600 Rh1DG071200 Rh6CG218500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	109, 134
AluI	AGCT	2 cut(s)	109, 134
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	165, 439
AsuHPI	GGTGA	3 cut(s)	16, 140, 350
AvaII	GGWCC	2 cut(s)	165, 439
BaeGI	GKGCMC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	343, 458
BciT130I	CCWGG	1 cut(s)	169
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	165, 439
BmgT120I	GGNCC	2 cut(s)	165, 439
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	44, 402
Bsp143I	GATC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	441
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 188
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	2 cut(s)	199, 253
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	330
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	3 cut(s)	66, 228, 400
CaiI	CAGNNNCTG	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	165, 439
CsiI	ACCWGGT	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	6 cut(s)	26, 65, 154, 196, 250, 391
CviJI	RGCY	5 cut(s)	18, 109, 134, 209, 379
CviKI_1	RGCY	5 cut(s)	18, 109, 134, 209, 379
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	165, 439
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	6 cut(s)	29, 68, 157, 199, 253, 394
FatI	CATG	6 cut(s)	25, 64, 153, 195, 249, 390
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	6 cut(s)	29, 68, 157, 199, 253, 394
HinfI	GANTC	2 cut(s)	235, 407
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	16, 140, 350
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	239, 454
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	64, 175, 191, 386, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 188
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	29, 68, 157, 199, 253, 394
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	232
MabI	ACCWGGT	1 cut(s)	167
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	4 cut(s)	80, 437, 489, 492
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	44, 402
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	63, 125, 199, 213, 259, 421
MroXI	GAANNNNTTC	1 cut(s)	11
MslI	CAYNNNNRTG	3 cut(s)	24, 69, 158
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	96, 188
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	6 cut(s)	29, 68, 157, 199, 253, 394
NlaIV	GGNNCC	1 cut(s)	441
NspI	RCATGY	2 cut(s)	199, 253
PciI	ACATGT	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	235, 407
PkrI	GCNGC	1 cut(s)	190
PscI	ACATGT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	165, 439
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	3 cut(s)	24, 69, 158
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	2 cut(s)	165, 439
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	44, 402
SetI	ASST	6 cut(s)	111, 117, 130, 136, 173, 281
SexAI	ACCWGGT	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	2 cut(s)	165, 439
SmiMI	CAYNNNNRTG	3 cut(s)	24, 69, 158
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	235, 407
TscAI	CASTG	3 cut(s)	66, 235, 407
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	81, 90, 324, 407
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	3 cut(s)	66, 235, 407
VpaK11BI	GGWCC	2 cut(s)	165, 439
XceI	RCATGY	2 cut(s)	199, 253
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.