Rh1DG071200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016955
Physical Location & Seq
Reverse (-)
12827067 .. 12827491
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG071200.1

Sequence Viewer

Length: 321 bp
ATGTATAAAGAAGCTGGGATTTTTGGTCCTATTTCTAACTCCATTCGAGTTACTGAATTCACTATTCGTGACGCGTACATGCTAAAGATTTTTGAGGATAACCAGACCCGTTTGCCAAGTTGGTGTAACATAGGGGATGAAAAGCTCCCATTCTGCCAGATCCTTGGTGAATTGCTGATGGAACTGCCTGAATATAACACCATAGAGCCATATGCAAACATGAATGAGCACTGTGAATCACAAAGACGACACGAAGAGGATTTGCTGGACCCAGAACCCATCTTGAAAGAACCCAGAAACTGCAGAAGAAGATTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.57

Weight (kDa)

4.92

Isoelectric Point (pI)

70.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 2 cut(s) 14, 145
AluI AGCT 2 cut(s) 14, 145
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 300
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 26, 268
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 26, 268
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 2 cut(s) 172, 287
BfmI CTRYAG 1 cut(s) 301
Bme18I GGWCC 2 cut(s) 26, 268
BmgT120I GGNCC 2 cut(s) 26, 268
BmiI GGNNCC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 159
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 305
BspPI GGATC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 249
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 301
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 1 cut(s) 159
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 26, 268
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 79, 220
CviJI RGCY 3 cut(s) 14, 145, 208
CviKI_1 RGCY 3 cut(s) 14, 145, 208
CviQI GTAC 1 cut(s) 76
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 26, 268
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 82, 223
FaiI YATR 9 cut(s) 6, 80, 131, 195, 203, 211, 213, 221, 319
FatI CATG 2 cut(s) 78, 219
FauNDI CATATG 1 cut(s) 211
FokI GGATG 1 cut(s) 149
GsaI CCCAGC 1 cut(s) 18
HgaI GACGC 1 cut(s) 80
Hin1II CATG 2 cut(s) 82, 223
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 68, 283
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 215, 303
Hsp92II CATG 2 cut(s) 82, 223
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 6 cut(s) 116, 170, 201, 251, 285, 307
MaeIII GTNAC 3 cut(s) 49, 68, 125
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 3 cut(s) 266, 318, 321
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 56, 170
MluI ACGCGT 1 cut(s) 72
MnlI CCTC 2 cut(s) 88, 250
MvnI CGCG 1 cut(s) 74
NdeI CATATG 1 cut(s) 211
NdeII GATC 1 cut(s) 159
NlaIII CATG 2 cut(s) 82, 223
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 82
PfeI GAWTC 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 26, 268
PstI CTGCAG 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 26, 268
SduI GDGCHC 1 cut(s) 231
SetI ASST 2 cut(s) 16, 147
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 2 cut(s) 26, 268
Sse9I AATT 2 cut(s) 56, 170
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 46
TasI AATT 2 cut(s) 56, 170
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 153, 236
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 26, 268
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.