Rh1CG172400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
38189587 .. 38190004
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG172400.1

Sequence Viewer

Length: 234 bp
ATGTCTATGTGGACCAGGTTGCAGCCTGCCTATGCTGCAAACATGTGGAATGAGGCTCTAAACAAGAGGGTAGGCATTGAGGTAATTGTGCTTCCCTTGTGGTTGCTCATGATGGCAAATCTACAACCTGTGTTGCTTTCATTCTTGCAATGTATAAAGAAGCTGGGATTTTTGGTCCTATTTCAAACTCCATTCGAGTTACTGAATTCACTATTTGTGATGCGTACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.96

Weight (kDa)

9.3

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 22, 35
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 12, 175
AvaII GGWCC 2 cut(s) 12, 175
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BbvI GCAGC 2 cut(s) 22, 34
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 16
BisI GCNGC 2 cut(s) 23, 36
BlsI GCNGC 2 cut(s) 24, 37
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 12, 175
BmgT120I GGNCC 2 cut(s) 12, 175
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 22, 34
BseYI CCCAGC 1 cut(s) 163
BspHI TCATGA 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 2 cut(s) 46, 231
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 22, 34
Cac8I GCNNGC 1 cut(s) 27
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 12, 175
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 1 cut(s) 225
CviAII CATG 3 cut(s) 43, 109, 228
CviJI RGCY 3 cut(s) 25, 56, 163
CviKI_1 RGCY 3 cut(s) 25, 56, 163
CviQI GTAC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 12, 175
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 3 cut(s) 46, 112, 231
FaiI YATR 6 cut(s) 8, 33, 44, 110, 155, 229
FatI CATG 3 cut(s) 42, 108, 227
Fnu4HI GCNGC 2 cut(s) 23, 36
Fsp4HI GCNGC 2 cut(s) 23, 36
GluI GCNGC 2 cut(s) 23, 36
GsaI CCCAGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 46, 112, 231
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 22, 38, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 46, 112, 231
LpnPI CCDG 4 cut(s) 28, 39, 141, 149
Lsp1109I GCAGC 2 cut(s) 22, 34
LweI GCATC 1 cut(s) 210
MabI ACCWGGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 198
MluCI AATT 2 cut(s) 84, 205
MnlI CCTC 3 cut(s) 46, 60, 73
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 35
NlaIII CATG 3 cut(s) 46, 112, 231
NspI RCATGY 2 cut(s) 46, 231
PagI TCATGA 1 cut(s) 108
PciI ACATGT 1 cut(s) 42
PkrI GCNGC 2 cut(s) 24, 37
PscI ACATGT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 1 cut(s) 14
PspPI GGNCC 2 cut(s) 12, 175
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SatI GCNGC 2 cut(s) 23, 36
Sau96I GGNCC 2 cut(s) 12, 175
ScrFI CCNGG 1 cut(s) 16
SetI ASST 4 cut(s) 20, 84, 130, 165
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 2 cut(s) 12, 175
Sse9I AATT 2 cut(s) 84, 205
StyD4I CCNGG 1 cut(s) 14
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 84, 205
TseI GCWGC 2 cut(s) 22, 35
TspDTI ATGAA 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 12, 175
XapI RAATTY 1 cut(s) 205
XceI RCATGY 2 cut(s) 46, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.