Rh6CG218500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016955
Physical Location & Seq
Forward (+)
36314787 .. 36315175
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG218500.1

Sequence Viewer

Length: 231 bp
ATGTCTATGTGGACCAGGTTGCAGCCTGCCTATGTTGCAAACATGTGGAATGAGGCTCTAAACAAGCGGGAAAGTACTGAGGGATTGGACTTGTATGAGATTCTAGCTGAGGTTGAAAATCGCGAGATATCTGTTAATCACTCGCTTACTATTCCAGAACAAGATGAGTGGGTGTACAGTGATGGCAAATCTACAACCTGCATGTGTTGCTTTTATTCTTGCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.85

Weight (kDa)

4.37

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 67
AfaI GTAC 2 cut(s) 76, 176
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 12
AvaII GGWCC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 69, 99
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 174
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 70, 100
BspFNI CGCG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 78, 108
BstFNI CGCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 35, 207
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 2 cut(s) 46, 205
BstSCI CCNGG 1 cut(s) 14
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 184
BtuMI TCGCGA 1 cut(s) 123
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 12
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 2 cut(s) 75, 175
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 2 cut(s) 43, 202
CviJI RGCY 3 cut(s) 25, 56, 107
CviKI_1 RGCY 3 cut(s) 25, 56, 107
CviQI GTAC 2 cut(s) 75, 175
DdeI CTNAG 2 cut(s) 78, 108
Eco32I GATATC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 129
FaeI CATG 2 cut(s) 46, 205
FaiI YATR 6 cut(s) 8, 33, 44, 96, 203, 229
FatI CATG 2 cut(s) 42, 201
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 46, 205
HinfI GANTC 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 12, 175
Hpy188III TCNNGA 2 cut(s) 122, 155
Hpy8I GTNNAC 2 cut(s) 12, 175
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 4 cut(s) 22, 38, 201, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 207
HpyF3I CTNAG 2 cut(s) 78, 108
Hsp92II CATG 2 cut(s) 46, 205
LpnPI CCDG 4 cut(s) 28, 39, 168, 211
Lsp1109I GCAGC 1 cut(s) 34
MabI ACCWGGT 1 cut(s) 14
MaeI CTAG 1 cut(s) 104
MnlI CCTC 3 cut(s) 46, 73, 103
MseI TTAA 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 35, 207
NlaIII CATG 2 cut(s) 46, 205
NruI TCGCGA 1 cut(s) 123
NspI RCATGY 2 cut(s) 46, 205
PciI ACATGT 1 cut(s) 42
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 24
PscI ACATGT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspPI GGNCC 1 cut(s) 12
RruI TCGCGA 1 cut(s) 123
RsaI GTAC 2 cut(s) 76, 176
RsaNI GTAC 2 cut(s) 75, 175
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 16
SetI ASST 4 cut(s) 20, 109, 114, 200
SexAI ACCWGGT 1 cut(s) 14
SinI GGWCC 1 cut(s) 12
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 179
TatI WGTACW 2 cut(s) 74, 174
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 22
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 12
XceI RCATGY 2 cut(s) 46, 205
XspI CTAG 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.