Rh1CG057700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016955
Physical Location & Seq
Reverse (-)
11383078 .. 11383863
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG057700.1

Sequence Viewer

Length: 537 bp
ATGTCTATGTGGACCAGGTTGCAGCCTGCCTATGCTGCAAACATGGGGAATGAGGCTCTAAACAAGCGGGTAGGTACTGAGGTAATTGTGCTTCCCTTGTGGATGCTCAGTATTTTCAAGAATGAATTGGCACAGGGATTGAACCTGTATGAGATTCTGGCTGAGGTTGAAAATCGTGAGATATCTGTTGATCACTTGCTTACTATTCCAGAACAAGATGAGTGGGTGTACAGTGATGGCAAATCTACAACCTGTGTTGCTTTCATTCTTGCAATGTATAAAGAAGCTGGGATTTTTGGTCCTATTTCTAACTCCATTCAAGTTACTGAATTCACTACCCGTTTGCCAAGTTGGTGTAACATAGGGGATGAAAAGCTCCCATTCTGCCAGATCCTTGGTGAATATCTGATGGAACTGCCTGAATATAACACCATAGAGCCATATGCAAACATGAATGAGCACTGTGAATCACGAAGACGACACGAAGAGGATTTGCTGGACCCAGAACCCAGAAACAGCCGAAGAAGATTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.59

Weight (kDa)

4.74

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 2 cut(s) 76, 230
AgsI TTSAA 4 cut(s) 118, 142, 170, 320
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 287, 376
AluI AGCT 2 cut(s) 287, 376
Alw21I GWGCWC 1 cut(s) 462
AlwI GGATC 1 cut(s) 385
ApeKI GCWGC 2 cut(s) 22, 35
ApoI RAATTY 1 cut(s) 329
AspS9I GGNCC 3 cut(s) 12, 299, 499
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 3 cut(s) 12, 299, 499
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 22, 34
BccI CCATC 2 cut(s) 230, 403
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 1 cut(s) 190
BisI GCNGC 2 cut(s) 23, 36
BlsI GCNGC 2 cut(s) 24, 37
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 3 cut(s) 12, 299, 499
BmgT120I GGNCC 3 cut(s) 12, 299, 499
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 108, 373
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 69, 121, 153
BseXI GCAGC 2 cut(s) 22, 34
BseYI CCCAGC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 462
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 2 cut(s) 190, 390
BspACI CCGC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 70, 120, 154
BspLI GGNNCC 1 cut(s) 501
BspPI GGATC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 279
BsrGI TGTACA 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 2 cut(s) 190, 390
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 233, 464
Bst6I CTCTTC 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 3 cut(s) 78, 107, 162
BstF5I GGATG 2 cut(s) 108, 373
BstKTI GATC 2 cut(s) 193, 393
BstMBI GATC 2 cut(s) 190, 390
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 22, 34
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 390
BstXI CCANNNNNNTGG 1 cut(s) 395
BstYI RGATCY 1 cut(s) 390
BtsCI GGATG 2 cut(s) 108, 373
BtsIMutI CAGTG 2 cut(s) 238, 460
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 3 cut(s) 12, 299, 499
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 2 cut(s) 75, 229
CspCI CAANNNNNGTGG 2 cut(s) 203, 238
CviAII CATG 2 cut(s) 43, 451
CviJI RGCY 7 cut(s) 25, 56, 161, 287, 376, 439, 519
CviKI_1 RGCY 7 cut(s) 25, 56, 161, 287, 376, 439, 519
CviQI GTAC 2 cut(s) 75, 229
DdeI CTNAG 3 cut(s) 78, 107, 162
DpnI GATC 2 cut(s) 192, 392
DpnII GATC 2 cut(s) 190, 390
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 394
Eco32I GATATC 1 cut(s) 183
Eco47I GGWCC 3 cut(s) 12, 299, 499
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 2 cut(s) 46, 454
FatI CATG 2 cut(s) 42, 450
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 23, 36
FokI GGATG 2 cut(s) 115, 380
Fsp4HI GCNGC 2 cut(s) 23, 36
GluI GCNGC 2 cut(s) 23, 36
GsaI CCCAGC 1 cut(s) 291
Hin1II CATG 2 cut(s) 46, 454
HinfI GANTC 2 cut(s) 154, 467
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 12, 229
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 4 cut(s) 118, 176, 209, 471
Hpy8I GTNNAC 2 cut(s) 12, 229
HpyCH4III ACNGT 2 cut(s) 233, 464
HpyCH4V TGCA 4 cut(s) 22, 38, 272, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 3 cut(s) 78, 107, 162
Hsp92II CATG 2 cut(s) 46, 454
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 390
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 2 cut(s) 22, 34
LweI GCATC 1 cut(s) 93
MabI ACCWGGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 322, 356
MalI GATC 2 cut(s) 192, 392
MboI GATC 2 cut(s) 190, 390
MboII GAAGA 4 cut(s) 486, 497, 534, 537
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 3 cut(s) 84, 125, 329
MnlI CCTC 4 cut(s) 46, 73, 157, 481
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 442
NdeII GATC 2 cut(s) 190, 390
NlaIII CATG 2 cut(s) 46, 454
NlaIV GGNNCC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 154, 467
PkrI GCNGC 2 cut(s) 24, 37
Psp6I CCWGG 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 3 cut(s) 12, 299, 499
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 2 cut(s) 76, 230
RsaNI GTAC 2 cut(s) 75, 229
SatI GCNGC 2 cut(s) 23, 36
Sau3AI GATC 2 cut(s) 190, 390
Sau96I GGNCC 3 cut(s) 12, 299, 499
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 462
SetI ASST 8 cut(s) 20, 76, 84, 147, 168, 254, 289, 378
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 1 cut(s) 93
SinI GGWCC 3 cut(s) 12, 299, 499
Sse9I AATT 3 cut(s) 84, 125, 329
SsiI CCGC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 233, 464
TasI AATT 3 cut(s) 84, 125, 329
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 2 cut(s) 154, 467
TscAI CASTG 2 cut(s) 238, 467
TseI GCWGC 2 cut(s) 22, 35
TspDTI ATGAA 4 cut(s) 138, 253, 384, 467
TspRI CASTG 2 cut(s) 238, 467
VpaK11BI GGWCC 3 cut(s) 12, 299, 499
XapI RAATTY 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.