Rroxscaffold_5G00373230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016955
Physical Location & Seq
Forward (+)
54485738 .. 54486389
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373230.1

Sequence Viewer

Length: 378 bp
ATGTCTATGTGGACCAGGTTGCAGCCTGCCTATGCTGCAAACATGTGGAATGAGGCTATAAACAAGCGGGTAGGTACGAGGGATTGGACATGTATGAGATTCGTCGAGGTTGAAAATCGCAAGATATCCGTTGATCACTTGCTTACTATTCCAGAACAAGATGAGTGGGTGTACAGTGATGGCAAATCTACAACCTGTGTTGCTTTCATTCTTGCAATGTATAAAGAAGCTGGGATTTTTGGTCCTATTTCTAACTCCATTCAAATTCGTGATGCGTACATGCTAAAGATTTTTGAGGATAACCAGACCCGTTTGCCAAGTTGGTGTAACATAAGGGATGAAAAGCTCCCATTCGCCAGATCCTTGGTGAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.61

Weight (kDa)

6.57

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 3 cut(s) 76, 173, 278
AflIII ACRYGT 2 cut(s) 42, 89
AgsI TTSAA 2 cut(s) 113, 263
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 230, 346
AluI AGCT 2 cut(s) 230, 346
AlwI GGATC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 22, 35
ApoI RAATTY 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 12, 242
AvaII GGWCC 2 cut(s) 12, 242
BbvI GCAGC 2 cut(s) 22, 34
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 1 cut(s) 133
BisI GCNGC 2 cut(s) 23, 36
BlsI GCNGC 2 cut(s) 24, 37
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 12, 242
BmgT120I GGNCC 2 cut(s) 12, 242
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 22, 34
BseYI CCCAGC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 2 cut(s) 133, 359
BspACI CCGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 2 cut(s) 133, 359
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 2 cut(s) 136, 362
BstMBI GATC 2 cut(s) 133, 359
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 3 cut(s) 46, 93, 283
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 22, 34
BstX2I RGATCY 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 1 cut(s) 359
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 12, 242
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 3 cut(s) 75, 172, 277
CspCI CAANNNNNGTGG 2 cut(s) 146, 181
CviAII CATG 3 cut(s) 43, 90, 280
CviJI RGCY 4 cut(s) 25, 56, 230, 346
CviKI_1 RGCY 4 cut(s) 25, 56, 230, 346
CviQI GTAC 3 cut(s) 75, 172, 277
DpnI GATC 2 cut(s) 135, 361
DpnII GATC 2 cut(s) 133, 359
Eco130I CCWWGG 1 cut(s) 363
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 12, 242
EcoRII CCWGG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 3 cut(s) 46, 93, 283
FaiI YATR 9 cut(s) 8, 33, 44, 59, 91, 95, 222, 281, 332
FatI CATG 3 cut(s) 42, 89, 279
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 23, 36
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 23, 36
GluI GCNGC 2 cut(s) 23, 36
GsaI CCCAGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 46, 93, 283
HinfI GANTC 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 12, 172
Hpy188I TCNGA 1 cut(s) 377
Hpy188III TCNNGA 2 cut(s) 152, 269
Hpy8I GTNNAC 2 cut(s) 12, 172
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 22, 38, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 46, 93, 283
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 133, 359
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 7 cut(s) 28, 39, 165, 208, 216, 317, 370
Lsp1109I GCAGC 2 cut(s) 22, 34
LweI GCATC 1 cut(s) 262
MabI ACCWGGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 135, 361
MboI GATC 2 cut(s) 133, 359
MflI RGATCY 1 cut(s) 359
MluCI AATT 1 cut(s) 264
MnlI CCTC 4 cut(s) 46, 72, 100, 289
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 133, 359
NlaIII CATG 3 cut(s) 46, 93, 283
NspI RCATGY 3 cut(s) 46, 93, 283
PciI ACATGT 2 cut(s) 42, 89
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 24, 37
PscI ACATGT 2 cut(s) 42, 89
Psp6I CCWGG 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 14
PspPI GGNCC 2 cut(s) 12, 242
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 3 cut(s) 76, 173, 278
RsaNI GTAC 3 cut(s) 75, 172, 277
SatI GCNGC 2 cut(s) 23, 36
Sau3AI GATC 2 cut(s) 133, 359
Sau96I GGNCC 2 cut(s) 12, 242
ScrFI CCNGG 1 cut(s) 16
SetI ASST 6 cut(s) 20, 76, 111, 197, 232, 348
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 2 cut(s) 12, 242
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 264
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 1 cut(s) 181
TseI GCWGC 2 cut(s) 22, 35
TspDTI ATGAA 2 cut(s) 196, 354
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 12, 242
XapI RAATTY 1 cut(s) 264
XceI RCATGY 3 cut(s) 46, 93, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.