Rmu_sc0004642.1_g000010

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004642.1
OG0013161
Physical Location & Seq
Forward (+)
39087 .. 42886
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1212 bp
atgtcttccactactgtctgtcatcaagagcttcaaccctgtgttgagtctcttgttaggctccaattggtaccgccaaggcctaaactctccatttctgaaccccaagaaattggaaaatccagtgacaaacctagctggagcttcctccagtctttaaccaccacaattcagacccccaaaacagagactgaaacagagaaggtctatgtccaccctcttgtgaaacgctcagcttcggtgctcagccccaaaagcctggcaatgtgcactgaaagcttgggcagcgagacgggaagcgatgcgagcagtggtgacatgtcttttctgcttcaaaagaacgacattcctttgttgtcacttgaagctgagaaaacccaaacattctctgctacaaaacagagtaatgtagaaacccgaaaactgagtgacagtgttcaagcaccaaagagattgaatcgtagttttaatggtgggaataattttcctcctcctttaacttctatcggtggctccaatggtgttcaatttttgcctcaccgtgaaagcggcaggcttgttcttaaagccgttcctgtcacttctcctgcaaactatttcaaagtggagcgcggcgatgggcggctcaggcttcagttgttgaggaatatgactctgaattctgacactaatgaggaggttgaagatgcagaagaagaagaagatgaggttgttagagaagaggaagtggttgaagaaataatgggagctgagactgaaacatgtcgggaggaagaggaagaggaaatggaagtggaggaaaagagtggtcgctattgggaaacagaggaggaggacacggaaggaaatagtgggagtgttgtgggagaaacgggaatggagaagaagcttcctagccgttgcaaggaaagccggcgcggtaacaacaaaatggtcatgaattggcagccggagtcgttctggattccctataactatcgctattttaaggatagtgagaagcgtcaatttcatactgctaagaaagctctggttctggaggaagataaggcaatgtgggaggttcctgcggggaaggatgttgtggaggagattgctccaatggtaacatttaattttgagaagaccacggtggcagaggagaccgccgtgggggaggctacacctatgagtgtggttactgtggatcctggggatgcctcctttgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

403

Amino Acids

45.05

Weight (kDa)

4.73

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 161 - 213 1.6e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 2 cut(s) 612, 918
AciI CCGC 7 cut(s) 74, 549, 612, 622, 918, 1070, 1146
AclWI GGATC 2 cut(s) 1181, 1194
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 904, 1152
AflIII ACRYGT 2 cut(s) 318, 761
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 734
AjnI CCWGG 2 cut(s) 258, 1189
AluBI AGCT 9 cut(s) 31, 138, 144, 236, 279, 368, 749, 889, 1028
AluI AGCT 9 cut(s) 31, 138, 144, 236, 279, 368, 749, 889, 1028
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 5 cut(s) 54, 182, 284, 746, 1136
Alw44I GTGCAC 1 cut(s) 268
AlwI GGATC 2 cut(s) 1181, 1194
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 285, 946
ApoI RAATTY 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 612, 918
AsuHPI GGTGA 2 cut(s) 326, 530
BaeGI GKGCMC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 1186
BanI GGYRCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 1130
Bbv12I GWGCWC 2 cut(s) 246, 272
BbvI GCAGC 2 cut(s) 297, 958
BccI CCATC 1 cut(s) 611
BceAI ACGGC 3 cut(s) 554, 882, 1133
BciT130I CCWGG 2 cut(s) 260, 1191
BcoDI GTCTC 5 cut(s) 54, 182, 284, 746, 1136
BfaI CTAG 2 cut(s) 135, 894
BisI GCNGC 5 cut(s) 286, 550, 613, 623, 947
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 5 cut(s) 287, 551, 614, 624, 948
Bme1390I CCNGG 2 cut(s) 260, 1191
BmiI GGNNCC 5 cut(s) 62, 72, 514, 1065, 1188
BmrFI CCNGG 2 cut(s) 260, 1191
BmsI GCATC 3 cut(s) 292, 676, 1186
BpiI GAAGAC 1 cut(s) 1130
BpmI CTGGAG 3 cut(s) 134, 160, 1058
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
BsaI GGTCTC 1 cut(s) 1136
BsaJI CCNNGG 4 cut(s) 77, 1128, 1149, 1190
Bsc4I CCNNNNNNNGG 2 cut(s) 904, 1152
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 2 cut(s) 123, 151
Bse3DI GCAATG 2 cut(s) 270, 1059
BseBI CCWGG 2 cut(s) 260, 1191
BseDI CCNNGG 4 cut(s) 77, 1128, 1149, 1190
BseGI GGATG 2 cut(s) 1084, 1201
BseLI CCNNNNNNNGG 2 cut(s) 904, 1152
BseMI GCAATG 2 cut(s) 270, 1059
BseMII CTCAG 6 cut(s) 246, 259, 360, 416, 640, 741
BseNI ACTGG 2 cut(s) 123, 151
BseRI GAGGAG 6 cut(s) 480, 689, 842, 845, 1103, 1154
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 297, 958
Bsh1236I CGCG 2 cut(s) 612, 918
BshFI GGCC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 2 cut(s) 913, 950
BslI CCNNNNNNNGG 2 cut(s) 904, 1152
BsmAI GTCTC 5 cut(s) 54, 182, 284, 746, 1136
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 1136
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp143I GATC 1 cut(s) 1186
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 7 cut(s) 74, 549, 612, 622, 918, 1070, 1146
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 6 cut(s) 245, 258, 361, 417, 639, 742
BspFNI CGCG 2 cut(s) 612, 918
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 5 cut(s) 62, 72, 514, 1065, 1188
BspPI GGATC 2 cut(s) 1181, 1194
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 1136
BsrDI GCAATG 2 cut(s) 270, 1059
BsrFI RCCGGY 1 cut(s) 912
BsrI ACTGG 2 cut(s) 123, 151
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 4 cut(s) 77, 1128, 1149, 1190
BssMI GATC 1 cut(s) 1186
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 260, 1191
Bst4CI ACNGT 5 cut(s) 16, 434, 542, 1132, 1183
Bst6I CTCTTC 3 cut(s) 714, 768, 774
BstC8I GCNNGC 3 cut(s) 307, 554, 914
BstDEI CTNAG 7 cut(s) 232, 245, 369, 425, 626, 750, 1020
BstDSI CCRYGG 2 cut(s) 1128, 1149
BstF5I GGATG 2 cut(s) 1084, 1201
BstFNI CGCG 2 cut(s) 612, 918
BstHHI GCGC 2 cut(s) 612, 918
BstKTI GATC 1 cut(s) 1189
BstMAI GTCTC 5 cut(s) 54, 182, 284, 746, 1136
BstMBI GATC 1 cut(s) 1186
BstMWI GCNNNNNNNGC 8 cut(s) 255, 276, 285, 306, 628, 909, 1025, 1205
BstNI CCWGG 2 cut(s) 260, 1191
BstNSI RCATGY 2 cut(s) 322, 765
BstSCI CCNGG 2 cut(s) 258, 1189
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 2 cut(s) 612, 918
BstV1I GCAGC 2 cut(s) 297, 958
BstV2I GAAGAC 1 cut(s) 1130
BstX2I RGATCY 1 cut(s) 1186
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BstYI RGATCY 1 cut(s) 1186
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 2 cut(s) 1128, 1149
BtgZI GCGATG 2 cut(s) 315, 630
BtsCI GGATG 2 cut(s) 1084, 1201
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 4 cut(s) 130, 270, 316, 439
Cac8I GCNNGC 3 cut(s) 307, 554, 914
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 936
CfoI GCGC 2 cut(s) 612, 918
Cfr10I RCCGGY 1 cut(s) 912
CseI GACGC 1 cut(s) 992
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 319, 762, 937
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 7 cut(s) 232, 245, 369, 425, 626, 750, 1020
DpnI GATC 1 cut(s) 1188
DpnII GATC 1 cut(s) 1186
Eam1104I CTCTTC 3 cut(s) 714, 768, 774
EarI CTCTTC 3 cut(s) 714, 768, 774
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 1136
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 2 cut(s) 258, 1189
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 3 cut(s) 322, 765, 940
FaiI YATR 8 cut(s) 210, 320, 650, 763, 938, 972, 1014, 1169
FatI CATG 3 cut(s) 318, 761, 936
FauI CCCGC 1 cut(s) 1063
Fnu4HI GCNGC 5 cut(s) 286, 550, 613, 623, 947
FokI GGATG 2 cut(s) 1091, 1208
Fsp4HI GCNGC 5 cut(s) 286, 550, 613, 623, 947
FspBI CTAG 2 cut(s) 135, 894
GlaI GCGC 2 cut(s) 611, 917
GluI GCNGC 5 cut(s) 286, 550, 613, 623, 947
GsuI CTGGAG 3 cut(s) 134, 160, 1058
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 913, 950
HgaI GACGC 1 cut(s) 992
HhaI GCGC 2 cut(s) 612, 918
Hin1II CATG 3 cut(s) 322, 765, 940
Hin6I GCGC 2 cut(s) 610, 916
HinP1I GCGC 2 cut(s) 610, 916
HindIII AAGCTT 2 cut(s) 277, 887
HinfI GANTC 5 cut(s) 47, 457, 652, 953, 964
HpaII CCGG 2 cut(s) 913, 950
HphI GGTGA 2 cut(s) 326, 530
Hpy166II GTNNAC 2 cut(s) 214, 270
Hpy188I TCNGA 4 cut(s) 100, 174, 657, 664
Hpy188III TCNNGA 5 cut(s) 26, 767, 937, 961, 1037
Hpy8I GTNNAC 2 cut(s) 214, 270
HpyAV CCTTC 3 cut(s) 196, 836, 1069
HpyCH4III ACNGT 5 cut(s) 16, 434, 542, 1132, 1183
HpyCH4V TGCA 4 cut(s) 270, 590, 689, 903
HpyF10VI GCNNNNNNNGC 8 cut(s) 255, 276, 285, 306, 628, 909, 1025, 1205
HpyF3I CTNAG 7 cut(s) 232, 245, 369, 425, 626, 750, 1020
Hsp92II CATG 3 cut(s) 322, 765, 940
HspAI GCGC 2 cut(s) 610, 916
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 912
KroNI GCCGGC 1 cut(s) 914
Kzo9I GATC 1 cut(s) 1186
LmnI GCTCC 6 cut(s) 66, 141, 518, 607, 746, 1102
Lsp1109I GCAGC 2 cut(s) 297, 958
LweI GCATC 3 cut(s) 292, 676, 1186
MaeI CTAG 2 cut(s) 135, 894
MaeIII GTNAC 8 cut(s) 125, 314, 357, 428, 577, 920, 1105, 1177
MalI GATC 1 cut(s) 1188
MboI GATC 1 cut(s) 1186
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 1186
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 9 cut(s) 65, 111, 168, 481, 527, 658, 940, 1007, 1114
MlyI GAGTC 3 cut(s) 56, 646, 962
MroNI GCCGGC 1 cut(s) 912
MseI TTAA 6 cut(s) 158, 468, 497, 564, 987, 1113
MspI CCGG 2 cut(s) 913, 950
MspR9I CCNGG 2 cut(s) 260, 1191
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 2 cut(s) 260, 1191
MvnI CGCG 2 cut(s) 612, 918
MwoI GCNNNNNNNGC 8 cut(s) 255, 276, 285, 306, 628, 909, 1025, 1205
NaeI GCCGGC 1 cut(s) 914
NdeII GATC 1 cut(s) 1186
NgoMIV GCCGGC 1 cut(s) 912
NlaIII CATG 3 cut(s) 322, 765, 940
NlaIV GGNNCC 5 cut(s) 62, 72, 514, 1065, 1188
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 765
PagI TCATGA 1 cut(s) 936
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 2 cut(s) 318, 761
PdiI GCCGGC 1 cut(s) 914
PfeI GAWTC 2 cut(s) 457, 964
PkrI GCNGC 5 cut(s) 287, 551, 614, 624, 948
PleI GAGTC 3 cut(s) 55, 646, 961
PpsI GAGTC 3 cut(s) 55, 646, 961
PscI ACATGT 2 cut(s) 318, 761
Psp6I CCWGG 2 cut(s) 258, 1189
PspGI CCWGG 2 cut(s) 258, 1189
PspN4I GGNNCC 5 cut(s) 62, 72, 514, 1065, 1188
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 1186
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 6 cut(s) 158, 468, 497, 564, 987, 1113
SatI GCNGC 5 cut(s) 286, 550, 613, 623, 947
Sau3AI GATC 1 cut(s) 1186
SchI GAGTC 3 cut(s) 56, 646, 962
ScrFI CCNGG 2 cut(s) 260, 1191
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 3 cut(s) 292, 676, 1186
Sse9I AATT 9 cut(s) 65, 111, 168, 481, 527, 658, 940, 1007, 1114
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 7 cut(s) 74, 549, 612, 622, 918, 1070, 1146
SspMI CTAG 2 cut(s) 135, 894
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 2 cut(s) 258, 1189
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 5 cut(s) 16, 434, 542, 1132, 1183
TasI AATT 9 cut(s) 65, 111, 168, 481, 527, 658, 940, 1007, 1114
TauI GCSGC 3 cut(s) 552, 615, 625
TfiI GAWTC 2 cut(s) 457, 964
Tru1I TTAA 6 cut(s) 158, 468, 497, 564, 987, 1113
Tru9I TTAA 6 cut(s) 158, 468, 497, 564, 987, 1113
TscAI CASTG 4 cut(s) 130, 277, 316, 439
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
TseI GCWGC 2 cut(s) 285, 946
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 2 cut(s) 953, 1001
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 4 cut(s) 130, 277, 316, 439
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 1 cut(s) 658
XceI RCATGY 2 cut(s) 322, 765
XspI CTAG 2 cut(s) 135, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.