Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004788.1

Orthogroup ID

OG0010856

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3044

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 334 bp

caagtggttcctgcagaagattggacatgaaggtctcaacaatatgttgatggcgtatgaggataaatctgcatatgctttgtgctccttttctttcgccattgggcccaatgctgagcctattgtatttctgggtaaaactccggggaaaatagttcctgcaaggggaccaaatgattttggatgggatccaatatttcaacctgatggttacgagcaaacttatgccgagatgtcaaaggaagaaaagaacaagatttctcatcgctctagagctcttgcactagtgaagtctcactttgctgaagctgcatacacttttgagaccaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

110

Amino Acids

12.38

Weight (kDa)

6.33

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ham1p_like	PF01725	2 - 97	1.4e-27	Ham1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13720 AT4G13720
fragaria_vesca	FvH4_4g05750
malus_domestica	MD13G1230900.v1.1
prunus_persica	Prupe.1G060800_v2.0.a1
pyrus_communis	pycom13g20350
rosa_chinensis	RchiOBHm_Chr4g0396911
rosa_laevigata	RLG00000009490 RLG00000027037
rosa_multiflora	Rmu_sc0004788.1_g000001 Rmu_sc0008929.1_g000013 Rmu_sc0038532.1_g000001
rosa_roxburghii	Rroxscaffold_5G00341830
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075200 Rh4BG071600 Rh4CG079900 Rh4CG295600 Rh4DG069000
rosa_wichuraiana	Rw4G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	183, 196
AcuI	CTGAAG	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	201
AhlI	ACTAGT	1 cut(s)	284
AluBI	AGCT	2 cut(s)	276, 309
AluI	AGCT	2 cut(s)	276, 309
Alw21I	GWGCWC	2 cut(s)	87, 278
Alw26I	GTCTC	3 cut(s)	39, 298, 318
AlwI	GGATC	2 cut(s)	183, 196
AoxI	GGCC	1 cut(s)	105
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	105, 106, 168
AsuC2I	CCSGG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	109, 278
Bbv12I	GWGCWC	2 cut(s)	87, 278
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	3 cut(s)	44, 178, 201
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	39, 298, 318
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	3 cut(s)	271, 285, 332
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	310
BlpI	GCTNAGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	105, 106, 168
BmiI	GGNNCC	4 cut(s)	9, 107, 169, 190
BmrFI	CCNGG	1 cut(s)	145
Bpu1102I	GCTNAGC	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	145
BsaI	GGTCTC	2 cut(s)	39, 318
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	87, 278
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	39, 298, 318
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	2 cut(s)	39, 318
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	3 cut(s)	87, 109, 278
Bsp143I	GATC	1 cut(s)	188
Bsp1720I	GCTNAGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	4 cut(s)	9, 107, 169, 190
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	2 cut(s)	183, 196
BspTNI	GGTCTC	2 cut(s)	39, 318
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	3 cut(s)	39, 298, 318
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	105, 106, 168
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	4 cut(s)	107, 119, 276, 309
CviKI_1	RGCY	4 cut(s)	107, 119, 276, 309
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	109, 278
Eco31I	GGTCTC	2 cut(s)	39, 318
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	109, 278
FaeI	CATG	1 cut(s)	30
FaiI	YATR	7 cut(s)	28, 45, 58, 74, 76, 226, 314
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	2 cut(s)	109, 278
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	3 cut(s)	271, 285, 332
GluI	GCNGC	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	30
HpaII	CCGG	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	14, 72, 162, 282, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	5 cut(s)	24, 117, 157, 172, 217
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	3 cut(s)	271, 285, 332
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	2 cut(s)	29, 255
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	3 cut(s)	87, 109, 278
MnlI	CCTC	1 cut(s)	53
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	4 cut(s)	9, 107, 169, 190
NmeAIII	GCCGAG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	278
PspN4I	GGNNCC	4 cut(s)	9, 107, 169, 190
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	3 cut(s)	105, 106, 168
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	3 cut(s)	105, 106, 168
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	3 cut(s)	87, 109, 278
SetI	ASST	4 cut(s)	35, 206, 278, 311
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	168
SpeI	ACTAGT	1 cut(s)	284
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	3 cut(s)	271, 285, 332
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	143
TseI	GCWGC	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	270
XspI	CTAG	3 cut(s)	271, 285, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.