Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004805.1

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Reverse (-)

172824 .. 182579

Gene Structure 9756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3369 bp

atggaaaacaagttgttgctcatgaactctatcagaaaacaagctctgataaaaaccttcgctgataatataggaaaagaagagttttgctgggtttgtcgagatgagagacgatctacggggaaaggtatccaaattctgagcgataccatcatcgggagctttgtctggttttgcttgaaagaaatggattccggtcgctatggtcttcagcaaggatgggataataacagcgctccggaggggtatggtgcagttcatgagccaaactttcgggtcggtggttcatatgatgagagaaggtttatagaggaaaggtactcaagggacaatgtttatccaagaagcacattccaccgtgaagttctggatagggataactacccaccaccacctcatgctgttggtatatggccaaattcaagaaggagaagttatgaagaagaatttcccattgatagggaacctaggagacatgagaaacagtacatggattcatatcatgagatggataacctctgtgatcatgagattgatacatttcaggaatttgataaattacgggatggctatcacagtattgacagctatcgggatcctgggtttgagaggacttcaaggcttgggggacgtgatcgtgatgattatgcatatgatgattttgactataggtccggtattacccataagaccaggggggacagtcgtgaaagggattatgactatggtcggcatagttatgattctgattatgacagaagtagtaggagagagggcaattggaggcgtcgtgaatctcgtgaccgtgagcgtgacaagaaatgtttaagtagggaaagagaaatgagtccatatagaaggcatgagcgttctagatctcggtctcgatctcatggtcatgatgatcatcccagatcaaggtcacctagaagtcgaagccatggccgaagtcatcgagaggacagctatgatgatggaaggtatgagagaactgataagcgaagagacagggatgagaaacgccagagagagcattattctgtggccccatctgcaactattgttgtgaagggtctttcacagaagaccactgaggaagatctataccagatccttgctgaatggggacctcttcgtcatgtccgtgtgatcaaagagcgtaattccggcatttcccgtggatttgcttttattgatttcccttccgtgggagcagctcgtattatgatggacaaactcggggacaatgggcatgtggtggatggcaggaaactattttttgagtacagtagtaagccaactgggggtgcaggtggatcttttggtcaggacagtactgggaaatctggccatgctaaccataaaagcatcactgtgccatctgattggatgtgtatcagctgtggatatgttaattttgcacgaagaacatcctgctttcagtgtaatgaggcacgaactgaggatgctcccgcagcagatatttcttcatccaatcaaatgacaggaaagaaaggatcagaggctggtcctactcatgttttggttgttcgtggactggatgaaaatgctgatgaggaaatgctgcgctatgaattttccaaacatgctcctatcaaggatctacgtcttgtcagagacaaattcactcatgtttcacggggatttgcgtttgtacacttccattcggtggaagatgctacgaaagctcttgaagcaacaaatggaacaccacttgaaaggaatgggcagattttaagagtagcatatgcaaaaagcattcttggtcctggatcaggcatgtcaggatcctcacagtcaagcagcctggcagctgctgcaattgaggcagcaacatttgctcaacagtatgatgctgttggatgggcaccaaaggaatataatccagacgacaaacaatccacgggagggaaggagcaaagtggcggggatttaaaagcagaaaaagatggtttggctccacaaactggttttgtatgggatgaggcatccggttactactatgatgcttcttccgggttctactatgatggaaatacaggtctctattatgatggtaacaatgggatttggtattcttatgatcaccaaactctgcagtacatcccttgcactgatcagaatggcatcaaagaatctgctaaccaatctcagctttcgaaggcatcagacggttcaagtaccaaaaaagtagtcatctctgcaccagctacaacctcagctgcatcattaccagatgcagtccaggctgctgcaacagcagcgatagctgcagagagaaaagaaaaggaaaagtccaaagagatcaagttggcatcaaagagcagtattttggctaacaagaagaaaatgagtaatgtattgaccatgtggaagcagaggagtcatgaagggcaagtaacccgtgtagctctagatgataaccagccaagtgcacctgctaatgatagactggtttcttctgttccatctacaaagacaaagtctaaaattgatgtaccaaccaaaaatgagaatactatatctagctcaggggttaccgccaatgtttctactgcagatactcttggtttagagtcttcagtcatgccaaggcctgtgggcaacagtataggagggacactgatgggagtgataaggggatctggaagaactgtagtaaaatcagatacatccttttcagcatctggtggagtttccgcaccttcaacttctgctgcatgcatagcaggttcttctgcatcaacagattcggatatctccactgttttgacacccttcagaactgatgcatcggcactaggttcttatacaccacctgtggctgctgggagtggcaagagaagattctctgaaatgccagcttctgctcataaagaacctcatactggatacagggatcgtgcggctgaaaggaggagcttgtatggctcgtcatcttcttttggagatgatttgcctgaacatggttttggggagtcaaatcgagactcggcattgaggaagggttcttttgattcaatgcctttcccccctggtgttgggggaggacgtgggactggagatgcaaccattgacagttacgaggttattacagccgacaaagcaattgatgagagcaatgtgggcaacaagatgcttcgcagcatgggctggcacgaaggcttgggtttaggaagagatgggagtggaatggtggaaccagtgcaggctcagagtgtagaaaggagagccggacttgggagtcagcagaagaagttagatccggctcttgaggctcaggctggagatagttataaaactctcattcacaagaaggcactggctaggttccgggagatgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1122

Amino Acids

124.36

Weight (kDa)

7.87

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	354 - 424	1.8e-11	RNA recognition motif
RRM_1	PF00076	515 - 580	2.9e-17	RNA recognition motif
OCRE	PF17780	662 - 710	2e-17	OCRE domain
G-patch	PF01585	1047 - 1088	3.9e-14	G-patch domain
G-patch_2	PF12656	1047 - 1092	1.5e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3318
AarI	CACCTGC	2 cut(s)	1301, 2467
AasI	GACNNNNNNGTC	2 cut(s)	1134, 3264
Acc36I	ACCTGC	3 cut(s)	1301, 2467, 2741
AccB1I	GGYRCC	1 cut(s)	1888
AccB7I	CCANNNNNTGG	2 cut(s)	1690, 1988
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	5 cut(s)	1473, 1947, 2562, 2721, 2927
AcoI	YGGCCR	3 cut(s)	413, 943, 1348
AcsI	RAATTY	6 cut(s)	135, 418, 446, 548, 1595, 1643
AcuI	CTGAAG	3 cut(s)	194, 2586, 2785
AcyI	GRCGYC	1 cut(s)	787
AfaI	GTAC	8 cut(s)	320, 488, 1286, 1336, 1677, 2123, 2203, 2520
AfeI	AGCGCT	1 cut(s)	235
AgsI	TTSAA	8 cut(s)	181, 423, 618, 1715, 1739, 2199, 2730, 3042
AhdI	GACNNNNNGTC	1 cut(s)	670
AjiI	CACGTC	2 cut(s)	632, 3074
AjnI	CCWGG	6 cut(s)	598, 692, 1789, 1827, 2265, 3055
AjuI	GAANNNNNNNTTGG	2 cut(s)	2976, 3008
Alw21I	GWGCWC	1 cut(s)	2458
Alw26I	GTCTC	7 cut(s)	103, 466, 888, 999, 1632, 2069, 3003
Alw44I	GTGCAC	1 cut(s)	2454
AlwNI	CAGNNNCTG	4 cut(s)	1526, 1838, 2708, 2888
Ama87I	CYCGRG	1 cut(s)	1238
Aor13HI	TCCGGA	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	5 cut(s)	413, 943, 1044, 1348, 2615
ApaLI	GTGCAC	1 cut(s)	2454
ApoI	RAATTY	6 cut(s)	135, 418, 446, 548, 1595, 1643
ArsI	GACNNNNNNTTYG	4 cut(s)	2199, 2231, 2489, 2521
Asp700I	GAANNNNTTC	1 cut(s)	447
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	236, 1590
AspS9I	GGNCC	5 cut(s)	672, 1045, 1127, 1529, 1787
AsuC2I	CCSGG	2 cut(s)	2038, 3356
AsuHPI	GGTGA	2 cut(s)	915, 2099
AsuII	TTCGAA	1 cut(s)	2180
AvaI	CYCGRG	1 cut(s)	1238
AvaII	GGWCC	4 cut(s)	672, 1127, 1529, 1787
AvrII	CCTAGG	1 cut(s)	467
BaeGI	GKGCMC	2 cut(s)	1891, 2458
BalI	TGGCCA	2 cut(s)	415, 1350
BamHI	GGATCC	2 cut(s)	595, 1808
BanI	GGYRCC	1 cut(s)	1888
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	3 cut(s)	200, 1091, 2592
Bbv12I	GWGCWC	1 cut(s)	2458
BbvCI	CCTCAGC	1 cut(s)	2239
BciT130I	CCWGG	6 cut(s)	600, 694, 1791, 1829, 2267, 3057
BciVI	GTATCC	2 cut(s)	140, 2906
BclI	TGATCA	5 cut(s)	523, 904, 1149, 2104, 2137
BcnI	CCSGG	2 cut(s)	2038, 3356
BcoDI	GTCTC	7 cut(s)	103, 466, 888, 999, 1632, 2069, 3003
BfaI	CTAG	7 cut(s)	468, 873, 927, 2435, 2547, 2822, 3348
BfmI	CTRYAG	5 cut(s)	667, 2117, 2292, 2577, 2676
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	3 cut(s)	1301, 2467, 2741
BfuI	GTATCC	2 cut(s)	140, 2906
BglII	AGATCT	2 cut(s)	875, 1099
BlnI	CCTAGG	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	1336
Bme1390I	CCNGG	8 cut(s)	600, 694, 1791, 1829, 2038, 2267, 3057, 3356
Bme18I	GGWCC	4 cut(s)	672, 1127, 1529, 1787
BmeRI	GACNNNNNGTC	1 cut(s)	670
BmeT110I	CYCGRG	1 cut(s)	1238
BmgBI	CACGTC	2 cut(s)	632, 3074
BmgT120I	GGNCC	5 cut(s)	672, 1045, 1127, 1529, 1787
BmiI	GGNNCC	9 cut(s)	465, 597, 1047, 1128, 1810, 1890, 1980, 3222, 3353
BmrFI	CCNGG	8 cut(s)	600, 694, 1791, 1829, 2038, 2267, 3057, 3356
BmrI	ACTGGG	2 cut(s)	1311, 1347
BmuI	ACTGGG	2 cut(s)	1311, 1347
BoxI	GACNNNNGTC	1 cut(s)	726
BpiI	GAAGAC	3 cut(s)	200, 1091, 2592
BpmI	CTGGAG	2 cut(s)	3102, 3327
Bpu10I	CCTNAGC	3 cut(s)	2239, 2551, 3300
Bpu14I	TTCGAA	1 cut(s)	2180
BpuEI	CTTGAG	2 cut(s)	307, 3314
BpuMI	CCSGG	2 cut(s)	2038, 3356
BsaBI	GATNNNNATC	4 cut(s)	498, 570, 906, 1394
BsaHI	GRCGYC	1 cut(s)	787
BsaI	GGTCTC	2 cut(s)	888, 2069
BsaJI	CCNNGG	9 cut(s)	467, 599, 693, 940, 1177, 1206, 1923, 2612, 3055
BsaWI	WCCGGW	4 cut(s)	194, 238, 674, 2012
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bse1I	ACTGG	9 cut(s)	1306, 1342, 1563, 1993, 2478, 2914, 3085, 3224, 3348
Bse3DI	GCAATG	1 cut(s)	3148
Bse8I	GATNNNNATC	4 cut(s)	498, 570, 906, 1394
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	6 cut(s)	600, 694, 1791, 1829, 2267, 3057
BseDI	CCNNGG	9 cut(s)	467, 599, 693, 940, 1177, 1206, 1923, 2612, 3055
BseJI	GATNNNNATC	4 cut(s)	498, 570, 906, 1394
BseMI	GCAATG	1 cut(s)	3148
BseMII	CTCAG	8 cut(s)	131, 1083, 1452, 2186, 2253, 2565, 3248, 3314
BseNI	ACTGG	9 cut(s)	1306, 1342, 1563, 1993, 2478, 2914, 3085, 3224, 3348
BseRI	GAGGAG	2 cut(s)	2416, 2953
BseSI	GKGCMC	2 cut(s)	1891, 2458
BseYI	CCCAGC	2 cut(s)	90, 2849
BsgI	GTGCAG	4 cut(s)	273, 1329, 2208, 3248
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	5 cut(s)	415, 945, 1046, 1350, 2617
BshNI	GGYRCC	1 cut(s)	1888
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	2458
BsiHKCI	CYCGRG	1 cut(s)	1238
BsiSI	CCGG	9 cut(s)	195, 239, 675, 1167, 2013, 2037, 3255, 3287, 3355
BslFI	GGGAC	7 cut(s)	341, 642, 713, 1140, 1256, 2653, 3091
BsmAI	GTCTC	7 cut(s)	103, 466, 888, 999, 1632, 2069, 3003
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	7 cut(s)	341, 642, 713, 1140, 1256, 2653, 3091
BsmI	GAATGC	1 cut(s)	1779
BsnI	GGCC	5 cut(s)	415, 945, 1046, 1350, 2617
Bso31I	GGTCTC	2 cut(s)	888, 2069
BsoBI	CYCGRG	1 cut(s)	1238
Bsp119I	TTCGAA	1 cut(s)	2180
Bsp1286I	GDGCHC	2 cut(s)	1891, 2458
Bsp13I	TCCGGA	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	1675
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	5 cut(s)	1473, 1947, 2562, 2721, 2927
BspANI	GGCC	5 cut(s)	415, 945, 1046, 1350, 2617
BspCNI	CTCAG	8 cut(s)	132, 1084, 1453, 2185, 2252, 2564, 3247, 3313
BspEI	TCCGGA	1 cut(s)	238
BspHI	TCATGA	6 cut(s)	21, 259, 502, 526, 898, 2407
BspLI	GGNNCC	9 cut(s)	465, 597, 1047, 1128, 1810, 1890, 1980, 3222, 3353
BspMAI	CTGCAG	3 cut(s)	2121, 2296, 2581
BspMI	ACCTGC	3 cut(s)	1301, 2467, 2741
BspT104I	TTCGAA	1 cut(s)	2180
BspT107I	GGYRCC	1 cut(s)	1888
BspTNI	GGTCTC	2 cut(s)	888, 2069
BsrDI	GCAATG	1 cut(s)	3148
BsrGI	TGTACA	1 cut(s)	1675
BsrI	ACTGG	9 cut(s)	1306, 1342, 1563, 1993, 2478, 2914, 3085, 3224, 3348
BssECI	CCNNGG	9 cut(s)	467, 599, 693, 940, 1177, 1206, 1923, 2612, 3055
BssNI	GRCGYC	1 cut(s)	787
BssSI	CACGAG	1 cut(s)	798
BssT1I	CCWWGG	3 cut(s)	467, 940, 2612
Bst2BI	CACGAG	1 cut(s)	798
Bst2UI	CCWGG	6 cut(s)	600, 694, 1791, 1829, 2267, 3057
Bst6I	CTCTTC	4 cut(s)	75, 997, 1137, 3193
BstACI	GRCGYC	1 cut(s)	787
BstAPI	GCANNNNNTGC	2 cut(s)	1838, 1859
BstAUI	TGTACA	1 cut(s)	1675
BstBI	TTCGAA	1 cut(s)	2180
BstC8I	GCNNGC	4 cut(s)	2743, 2883, 3176, 3231
BstDEI	CTNAG	8 cut(s)	140, 1092, 1461, 2172, 2239, 2551, 3234, 3300
BstDSI	CCRYGG	4 cut(s)	940, 1177, 1206, 1923
BstEII	GGTNACC	2 cut(s)	921, 2557
BstENI	CCTNNNNNAGG	1 cut(s)	1794
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	236, 1590
BstMAI	GTCTC	7 cut(s)	103, 466, 888, 999, 1632, 2069, 3003
BstMCI	CGRYCG	1 cut(s)	199
BstNI	CCWGG	6 cut(s)	600, 694, 1791, 1829, 2267, 3057
BstNSI	RCATGY	4 cut(s)	1256, 1610, 1804, 2745
BstPAI	GACNNNNGTC	1 cut(s)	726
BstPI	GGTNACC	2 cut(s)	921, 2557
BstSCI	CCNGG	8 cut(s)	598, 692, 1789, 1827, 2036, 2265, 3055, 3354
BstSFI	CTRYAG	5 cut(s)	667, 2117, 2292, 2577, 2676
BstSLI	GKGCMC	2 cut(s)	1891, 2458
BstV2I	GAAGAC	3 cut(s)	200, 1091, 2592
BstX2I	RGATCY	9 cut(s)	595, 875, 1099, 1110, 1316, 1621, 1808, 2663, 3283
BstXI	CCANNNNNNTGG	1 cut(s)	1386
BstYI	RGATCY	9 cut(s)	595, 875, 1099, 1110, 1316, 1621, 1808, 2663, 3283
BsuI	GTATCC	2 cut(s)	140, 2906
BsuRI	GGCC	5 cut(s)	415, 945, 1046, 1350, 2617
BtgI	CCRYGG	4 cut(s)	940, 1177, 1206, 1923
BtrI	CACGTC	2 cut(s)	632, 3074
BtsIMutI	CAGTG	8 cut(s)	1089, 1371, 1448, 2133, 2642, 2784, 3231, 3341
BveI	ACCTGC	3 cut(s)	1301, 2467, 2741
Cac8I	GCNNGC	4 cut(s)	2743, 2883, 3176, 3231
CaiI	CAGNNNCTG	4 cut(s)	1526, 1838, 2708, 2888
CciI	TCATGA	6 cut(s)	21, 259, 502, 526, 898, 2407
CfoI	GCGC	2 cut(s)	236, 1590
Cfr13I	GGNCC	5 cut(s)	672, 1045, 1127, 1529, 1787
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	8 cut(s)	319, 487, 1285, 1335, 1676, 2122, 2202, 2519
CspCI	CAANNNNNGTGG	2 cut(s)	2601, 2636
CviQI	GTAC	8 cut(s)	319, 487, 1285, 1335, 1676, 2122, 2202, 2519
DdeI	CTNAG	8 cut(s)	140, 1092, 1461, 2172, 2239, 2551, 3234, 3300
DraI	TTTAAA	1 cut(s)	1956
DrdI	GACNNNNNNGTC	2 cut(s)	1134, 3264
DriI	GACNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	2 cut(s)	1134, 3264
EaeI	YGGCCR	3 cut(s)	413, 943, 1348
Eam1104I	CTCTTC	4 cut(s)	75, 997, 1137, 3193
Eam1105I	GACNNNNNGTC	1 cut(s)	670
EarI	CTCTTC	4 cut(s)	75, 997, 1137, 3193
Eco130I	CCWWGG	3 cut(s)	467, 940, 2612
Eco147I	AGGCCT	1 cut(s)	2617
Eco31I	GGTCTC	2 cut(s)	888, 2069
Eco32I	GATATC	1 cut(s)	2779
Eco47I	GGWCC	4 cut(s)	672, 1127, 1529, 1787
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	194, 2586, 2785
Eco88I	CYCGRG	1 cut(s)	1238
Eco91I	GGTNACC	2 cut(s)	921, 2557
EcoNI	CCTNNNNNAGG	1 cut(s)	1794
EcoO109I	RGGNCCY	1 cut(s)	1127
EcoO65I	GGTNACC	2 cut(s)	921, 2557
EcoRII	CCWGG	6 cut(s)	598, 692, 1789, 1827, 2265, 3055
EcoRV	GATATC	1 cut(s)	2779
EcoT14I	CCWWGG	3 cut(s)	467, 940, 2612
EcoT22I	ATGCAT	3 cut(s)	652, 2747, 2815
ErhI	CCWWGG	3 cut(s)	467, 940, 2612
Esp3I	CGTCTC	1 cut(s)	103
FaqI	GGGAC	7 cut(s)	341, 642, 713, 1140, 1256, 2653, 3091
FauI	CCCGC	2 cut(s)	1480, 1940
FauNDI	CATATG	3 cut(s)	289, 652, 1768
FbaI	TGATCA	5 cut(s)	523, 904, 1149, 2104, 2137
FspBI	CTAG	7 cut(s)	468, 873, 927, 2435, 2547, 2822, 3348
GlaI	GCGC	2 cut(s)	235, 1589
GsaI	CCCAGC	2 cut(s)	94, 2853
GsuI	CTGGAG	2 cut(s)	3102, 3327
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	5 cut(s)	415, 945, 1046, 1350, 2617
HapII	CCGG	9 cut(s)	195, 239, 675, 1167, 2013, 2037, 3255, 3287, 3355
HgaI	GACGC	1 cut(s)	776
HhaI	GCGC	2 cut(s)	236, 1590
Hin1I	GRCGYC	1 cut(s)	787
Hin6I	GCGC	2 cut(s)	234, 1588
HinP1I	GCGC	2 cut(s)	234, 1588
HpaII	CCGG	9 cut(s)	195, 239, 675, 1167, 2013, 2037, 3255, 3287, 3355
HphI	GGTGA	2 cut(s)	915, 2099
Hpy166II	GTNNAC	3 cut(s)	1556, 1678, 2456
Hpy8I	GTNNAC	3 cut(s)	1556, 1678, 2456
Hpy99I	CGWCG	1 cut(s)	792
HpyCH4IV	ACGT	3 cut(s)	631, 1627, 3073
HpyF3I	CTNAG	8 cut(s)	140, 1092, 1461, 2172, 2239, 2551, 3234, 3300
HpySE526I	ACGT	3 cut(s)	631, 1627, 3073
Hsp92I	GRCGYC	1 cut(s)	787
HspAI	GCGC	2 cut(s)	234, 1588
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	5 cut(s)	523, 904, 1149, 2104, 2137
LmnI	GCTCC	8 cut(s)	159, 241, 1211, 1474, 1615, 1936, 1984, 2940
MaeI	CTAG	7 cut(s)	468, 873, 927, 2435, 2547, 2822, 3348
MaeII	ACGT	3 cut(s)	631, 1627, 3073
MaeIII	GTNAC	8 cut(s)	800, 812, 921, 2015, 2078, 2419, 2557, 3101
MfeI	CAATTG	3 cut(s)	778, 1842, 3129
MflI	RGATCY	9 cut(s)	595, 875, 1099, 1110, 1316, 1621, 1808, 2663, 3283
MhlI	GDGCHC	2 cut(s)	1891, 2458
MlsI	TGGCCA	2 cut(s)	415, 1350
MluNI	TGGCCA	2 cut(s)	415, 1350
MlyI	GAGTC	6 cut(s)	856, 2413, 2606, 3005, 3008, 3274
MmeI	TCCRAC	1 cut(s)	1861
Mox20I	TGGCCA	2 cut(s)	415, 1350
Mph1103I	ATGCAT	3 cut(s)	652, 2747, 2815
MroI	TCCGGA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	447
MscI	TGGCCA	2 cut(s)	415, 1350
MseI	TTAA	4 cut(s)	827, 1413, 1757, 1955
MslI	CAYNNNNRTG	4 cut(s)	738, 897, 1143, 1373
Msp20I	TGGCCA	2 cut(s)	415, 1350
MspA1I	CMGCKG	3 cut(s)	1401, 1835, 2243
MspI	CCGG	9 cut(s)	195, 239, 675, 1167, 2013, 2037, 3255, 3287, 3355
MspR9I	CCNGG	8 cut(s)	600, 694, 1791, 1829, 2038, 2267, 3057, 3356
MunI	CAATTG	3 cut(s)	778, 1842, 3129
Mva1269I	GAATGC	1 cut(s)	1779
MvaI	CCWGG	6 cut(s)	600, 694, 1791, 1829, 2267, 3057
NciI	CCSGG	2 cut(s)	2038, 3356
NcoI	CCATGG	1 cut(s)	940
NdeI	CATATG	3 cut(s)	289, 652, 1768
NlaIV	GGNNCC	9 cut(s)	465, 597, 1047, 1128, 1810, 1890, 1980, 3222, 3353
NmeAIII	GCCGAG	1 cut(s)	2993
NmuCI	GTSAC	3 cut(s)	800, 812, 921
NsiI	ATGCAT	3 cut(s)	652, 2747, 2815
NspI	RCATGY	4 cut(s)	1256, 1610, 1804, 2745
NspV	TTCGAA	1 cut(s)	2180
PaeI	GCATGC	1 cut(s)	2745
PagI	TCATGA	6 cut(s)	21, 259, 502, 526, 898, 2407
PaqCI	CACCTGC	2 cut(s)	1301, 2467
PceI	AGGCCT	1 cut(s)	2617
PcsI	WCGNNNNNNNCGW	2 cut(s)	796, 1141
PctI	GAATGC	1 cut(s)	1779
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	8 cut(s)	191, 494, 743, 794, 2156, 2771, 2868, 3038
PflFI	GACNNNGTC	1 cut(s)	2503
PflMI	CCANNNNNTGG	2 cut(s)	1690, 1988
PfoI	TCCNGGA	2 cut(s)	1789, 3354
PleI	GAGTC	6 cut(s)	855, 2412, 2605, 3005, 3007, 3273
PpsI	GAGTC	6 cut(s)	855, 2412, 2605, 3005, 3007, 3273
PpuMI	RGGWCCY	1 cut(s)	1127
PshAI	GACNNNNGTC	1 cut(s)	726
PsiI	TTATAA	1 cut(s)	3318
Psp5II	RGGWCCY	1 cut(s)	1127
Psp6I	CCWGG	6 cut(s)	598, 692, 1789, 1827, 2265, 3055
PspEI	GGTNACC	2 cut(s)	921, 2557
PspFI	CCCAGC	2 cut(s)	90, 2849
PspGI	CCWGG	6 cut(s)	598, 692, 1789, 1827, 2265, 3055
PspN4I	GGNNCC	9 cut(s)	465, 597, 1047, 1128, 1810, 1890, 1980, 3222, 3353
PspPI	GGNCC	5 cut(s)	672, 1045, 1127, 1529, 1787
PspPPI	RGGWCCY	1 cut(s)	1127
PstI	CTGCAG	3 cut(s)	2121, 2296, 2581
PstNI	CAGNNNCTG	4 cut(s)	1526, 1838, 2708, 2888
PsuI	RGATCY	9 cut(s)	595, 875, 1099, 1110, 1316, 1621, 1808, 2663, 3283
PsyI	GACNNNGTC	1 cut(s)	2503
PvuII	CAGCTG	3 cut(s)	1401, 1835, 2243
RsaI	GTAC	8 cut(s)	320, 488, 1286, 1336, 1677, 2123, 2203, 2520
RsaNI	GTAC	8 cut(s)	319, 487, 1285, 1335, 1676, 2122, 2202, 2519
RseI	CAYNNNNRTG	4 cut(s)	738, 897, 1143, 1373
SaqAI	TTAA	4 cut(s)	827, 1413, 1757, 1955
Sau96I	GGNCC	5 cut(s)	672, 1045, 1127, 1529, 1787
ScaI	AGTACT	1 cut(s)	1336
SchI	GAGTC	6 cut(s)	856, 2413, 2606, 3005, 3008, 3274
ScrFI	CCNGG	8 cut(s)	600, 694, 1791, 1829, 2038, 2267, 3057, 3356
SduI	GDGCHC	2 cut(s)	1891, 2458
SfcI	CTRYAG	5 cut(s)	667, 2117, 2292, 2577, 2676
SfuI	TTCGAA	1 cut(s)	2180
SinI	GGWCC	4 cut(s)	672, 1127, 1529, 1787
SmiMI	CAYNNNNRTG	4 cut(s)	738, 897, 1143, 1373
SmlI	CTYRAG	2 cut(s)	322, 3293
SmoI	CTYRAG	2 cut(s)	322, 3293
SphI	GCATGC	1 cut(s)	2745
SseBI	AGGCCT	1 cut(s)	2617
SsiI	CCGC	5 cut(s)	1473, 1947, 2562, 2721, 2927
SspMI	CTAG	7 cut(s)	468, 873, 927, 2435, 2547, 2822, 3348
StuI	AGGCCT	1 cut(s)	2617
StyD4I	CCNGG	8 cut(s)	598, 692, 1789, 1827, 2036, 2265, 3055, 3354
StyI	CCWWGG	3 cut(s)	467, 940, 2612
TaiI	ACGT	3 cut(s)	634, 1630, 3076
TaqI	TCGA	6 cut(s)	100, 886, 934, 955, 2180, 3007
TaqII	GACCGA	1 cut(s)	870
TatI	WGTACW	5 cut(s)	486, 1284, 1334, 1675, 2121
TauI	GCSGC	1 cut(s)	2930
TfiI	GAWTC	8 cut(s)	191, 494, 743, 794, 2156, 2771, 2868, 3038
Tru1I	TTAA	4 cut(s)	827, 1413, 1757, 1955
Tru9I	TTAA	4 cut(s)	827, 1413, 1757, 1955
TscAI	CASTG	8 cut(s)	1096, 1378, 1448, 2140, 2649, 2791, 3231, 3348
TseFI	GTSAC	3 cut(s)	800, 812, 921
Tsp45I	GTSAC	3 cut(s)	800, 812, 921
TspDTI	ATGAA	9 cut(s)	38, 248, 276, 453, 486, 1479, 1578, 1608, 2424
TspGWI	ACGGA	2 cut(s)	1133, 1195
TspRI	CASTG	8 cut(s)	1096, 1378, 1448, 2140, 2649, 2791, 3231, 3348
Tth111I	GACNNNGTC	1 cut(s)	2503
Van91I	CCANNNNNTGG	2 cut(s)	1690, 1988
VneI	GTGCAC	1 cut(s)	2454
VpaK11BI	GGWCC	4 cut(s)	672, 1127, 1529, 1787
XagI	CCTNNNNNAGG	1 cut(s)	1794
XapI	RAATTY	6 cut(s)	135, 418, 446, 548, 1595, 1643
XbaI	TCTAGA	2 cut(s)	872, 2434
XceI	RCATGY	4 cut(s)	1256, 1610, 1804, 2745
XmaJI	CCTAGG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	7 cut(s)	468, 873, 927, 2435, 2547, 2822, 3348
ZrmI	AGTACT	1 cut(s)	1336
Zsp2I	ATGCAT	3 cut(s)	652, 2747, 2815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.