Rmu_sc0004831.1_g000004

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004831.1
OG0011155
Physical Location & Seq
Reverse (-)
25588 .. 29152
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
atgccaaataattacagtcaaggaaaccttagcgaaggagaggatccggatccgataccctttgatttctcacaagaagaaaggggagtcaagtcaagtcggattcggggggtgatcaaaatggaagtagaaggaggtgaggaggtgacatggagcagagaaacagttcccaaggttgtgaagatagtgagcacaaggctccctcagagagacctcatctctctcttgctagtcagcccatggctcaacgctactctcatctcccccccttccctttggctgcttatcgattttcgtgaaatgaataatgctgggaatcgcctaatggctgctctgtcactgccgcgatatcggcatgtgaagcagataaaccttgaatttgcacaagatattgaagacaaacatcttgaactcataaggaacaagtgttttggttctcttcaaagccttgaagttttgaatctgaatagctgccagaagatttctgataagggagttcaagatataaccagtgcttgtgccaatctgaaggtcttttctatttattggaatgtgagggtgacagatataggtataacacacctggtgaaaaattgcaagtatatcattgatctgaatataagtggctgtaagaatcttttagacaaaagtttgcaactggttgctcagacttatccagaattagagttgctgaatctgacaaggtgtgtcaagttaacagattttggcttgcagcagatattgaacagttgctccagtctccagagtctcaacttatacgccctgtctagcttcactgatgaagcttacaagaggatatcacttctaacccatcttaaattcttggatctatgtggtgcccagaatctatcagatgaagggctttcttgtatagctagatgcaagggccttctgtctctcagtttgacatggtgtgtacgtgtcactgatgtgggggtcatagccattgcagagagttgcacctctctcgaatatctcagcttatttgggatagttggggtgaccgatgcatgcctggattccctctcaaggacctgttcgaacacaattactactcttgatgtgaatggatgtattggaattaagagacggagtcgtgatgaattgcttaaattgtttccaaagttgcggtgcttcaaagtgcacagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

390

Amino Acids

43.63

Weight (kDa)

7.42

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 173 - 322 2.6e-12 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 857
AccII CGCG 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 2 cut(s) 344, 1150
AclWI GGATC 5 cut(s) 38, 44, 51, 57, 855
AcsI RAATTY 2 cut(s) 377, 839
AcuI CTGAAG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 1 cut(s) 1050
AflIII ACRYGT 1 cut(s) 940
AgsI TTSAA 9 cut(s) 377, 395, 410, 443, 452, 460, 500, 745, 1159
AjnI CCWGG 2 cut(s) 582, 1035
AleI CACNNNNGTG 1 cut(s) 950
AloI GAACNNNNNNTCC 2 cut(s) 737, 769
AluBI AGCT 6 cut(s) 471, 792, 806, 896, 1002, 1170
AluI AGCT 6 cut(s) 471, 792, 806, 896, 1002, 1170
Alw21I GWGCWC 2 cut(s) 194, 1167
Alw26I GTCTC 5 cut(s) 204, 764, 773, 921, 1102
Alw44I GTGCAC 1 cut(s) 1163
AlwI GGATC 5 cut(s) 38, 44, 51, 57, 855
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 1 cut(s) 907
ApaLI GTGCAC 1 cut(s) 1163
ApeKI GCWGC 4 cut(s) 280, 329, 471, 733
ApoI RAATTY 2 cut(s) 377, 839
Asp700I GAANNNNTTC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 907, 1053
AsuHPI GGTGA 6 cut(s) 124, 149, 157, 571, 598, 1033
AsuII TTCGAA 1 cut(s) 1061
AvaII GGWCC 1 cut(s) 1053
BaeGI GKGCMC 2 cut(s) 862, 1167
BamHI GGATCC 2 cut(s) 43, 49
BanI GGYRCC 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 194, 1167
BbvI GCAGC 4 cut(s) 267, 316, 458, 745
BccI CCATC 1 cut(s) 840
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 2 cut(s) 584, 1037
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 5 cut(s) 204, 764, 773, 921, 1102
BfaI CTAG 3 cut(s) 230, 789, 897
BisI GCNGC 5 cut(s) 281, 330, 344, 472, 734
BlsI GCNGC 5 cut(s) 282, 331, 345, 473, 735
Bme1390I CCNGG 2 cut(s) 584, 1037
Bme18I GGWCC 1 cut(s) 1053
BmgT120I GGNCC 2 cut(s) 907, 1053
BmiI GGNNCC 4 cut(s) 45, 51, 200, 859
BmrFI CCNGG 2 cut(s) 584, 1037
BmsI GCATC 2 cut(s) 890, 1018
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 739, 746
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 1033
Bsa29I ATCGAT 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 941
BsaBI GATNNNNATC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 171, 239
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 1050
Bse1I ACTGG 3 cut(s) 510, 663, 756
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 584, 1037
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 171, 239
BseGI GGATG 1 cut(s) 1097
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 1050
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 4 cut(s) 218, 680, 934, 1012
BseNI ACTGG 3 cut(s) 510, 663, 756
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 2 cut(s) 862, 1167
BseXI GCAGC 4 cut(s) 267, 316, 458, 745
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 909
BshNI GGYRCC 1 cut(s) 857
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 194, 1167
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 1050
BsmAI GTCTC 5 cut(s) 204, 764, 773, 921, 1102
BsmBI CGTCTC 1 cut(s) 1102
BsnI GGCC 1 cut(s) 909
Bso31I GGTCTC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 1061
Bsp1286I GDGCHC 3 cut(s) 194, 862, 1167
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 43, 49, 114, 610, 847
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 2 cut(s) 344, 1150
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 4 cut(s) 217, 679, 933, 1011
BspDI ATCGAT 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 45, 51, 200, 859
BspPI GGATC 5 cut(s) 38, 44, 51, 57, 855
BspT104I TTCGAA 1 cut(s) 1061
BspT107I GGYRCC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 966
BsrI ACTGG 3 cut(s) 510, 663, 756
BssECI CCNNGG 2 cut(s) 171, 239
BssMI GATC 5 cut(s) 43, 49, 114, 610, 847
BssT1I CCWWGG 2 cut(s) 171, 239
Bst2UI CCWGG 2 cut(s) 584, 1037
Bst4CI ACNGT 3 cut(s) 17, 166, 749
Bst6I CTCTTC 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 941
BstBI TTCGAA 1 cut(s) 1061
BstC8I GCNNGC 2 cut(s) 731, 1033
BstDEI CTNAG 5 cut(s) 29, 204, 666, 920, 998
BstDSI CCRYGG 1 cut(s) 239
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 1 cut(s) 1097
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 5 cut(s) 46, 52, 117, 613, 850
BstMAI GTCTC 5 cut(s) 204, 764, 773, 921, 1102
BstMBI GATC 5 cut(s) 43, 49, 114, 610, 847
BstMWI GCNNNNNNNGC 2 cut(s) 352, 361
BstNI CCWGG 2 cut(s) 584, 1037
BstNSI RCATGY 2 cut(s) 359, 1035
BstPI GGTNACC 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 582, 1035
BstSLI GKGCMC 2 cut(s) 862, 1167
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 267, 316, 458, 745
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 3 cut(s) 43, 49, 847
BstYI RGATCY 3 cut(s) 43, 49, 847
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 1 cut(s) 909
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 1097
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 4 cut(s) 338, 517, 795, 945
Cac8I GCNNGC 2 cut(s) 731, 1033
Cfr13I GGNCC 2 cut(s) 907, 1053
ClaI ATCGAT 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 582
Csp6I GTAC 1 cut(s) 938
CviAII CATG 5 cut(s) 150, 240, 356, 930, 1032
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 5 cut(s) 29, 204, 666, 920, 998
DpnI GATC 5 cut(s) 45, 51, 116, 612, 849
DpnII GATC 5 cut(s) 43, 49, 114, 610, 847
DraIII CACNNNGTG 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 171, 239
Eco31I GGTCTC 1 cut(s) 204
Eco32I GATATC 2 cut(s) 350, 819
Eco47I GGWCC 1 cut(s) 1053
Eco57I CTGAAG 1 cut(s) 548
Eco91I GGTNACC 1 cut(s) 1021
EcoO109I RGGNCCY 2 cut(s) 907, 1053
EcoO65I GGTNACC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 582, 1035
EcoRV GATATC 2 cut(s) 350, 819
EcoT14I CCWWGG 2 cut(s) 171, 239
EcoT22I ATGCAT 1 cut(s) 1033
ErhI CCWWGG 2 cut(s) 171, 239
Esp3I CGTCTC 1 cut(s) 1102
FaeI CATG 5 cut(s) 153, 243, 359, 933, 1035
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 5 cut(s) 149, 239, 355, 929, 1031
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 281, 330, 344, 472, 734
FokI GGATG 1 cut(s) 1104
Fsp4HI GCNGC 5 cut(s) 281, 330, 344, 472, 734
FspBI CTAG 3 cut(s) 230, 789, 897
GluI GCNGC 5 cut(s) 281, 330, 344, 472, 734
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 2 cut(s) 739, 746
HaeIII GGCC 1 cut(s) 909
HapII CCGG 1 cut(s) 47
Hin1II CATG 5 cut(s) 153, 243, 359, 933, 1035
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HindIII AAGCTT 1 cut(s) 804
HpaI GTTAAC 1 cut(s) 717
HpaII CCGG 1 cut(s) 47
HphI GGTGA 6 cut(s) 124, 149, 157, 571, 598, 1033
Hpy166II GTNNAC 3 cut(s) 717, 938, 1165
Hpy188III TCNNGA 9 cut(s) 47, 296, 407, 500, 677, 763, 989, 1079, 1118
Hpy8I GTNNAC 3 cut(s) 717, 938, 1165
HpyAV CCTTC 6 cut(s) 29, 125, 279, 523, 872, 920
HpyCH4III ACNGT 3 cut(s) 17, 166, 749
HpyCH4IV ACGT 1 cut(s) 940
HpyCH4V TGCA 9 cut(s) 383, 597, 655, 733, 903, 971, 981, 1031, 1165
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 361
HpyF3I CTNAG 5 cut(s) 29, 204, 666, 920, 998
HpySE526I ACGT 1 cut(s) 940
Hsp92II CATG 5 cut(s) 153, 243, 359, 933, 1035
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 717
Kzo9I GATC 5 cut(s) 43, 49, 114, 610, 847
LmnI GCTCC 3 cut(s) 153, 204, 758
Lsp1109I GCAGC 4 cut(s) 267, 316, 458, 745
LweI GCATC 2 cut(s) 890, 1018
MabI ACCWGGT 1 cut(s) 582
MaeI CTAG 3 cut(s) 230, 789, 897
MaeII ACGT 1 cut(s) 940
MaeIII GTNAC 5 cut(s) 145, 336, 559, 943, 1021
MalI GATC 5 cut(s) 45, 51, 116, 612, 849
MboI GATC 5 cut(s) 43, 49, 114, 610, 847
MboII GAAGA 5 cut(s) 89, 193, 407, 431, 490
MflI RGATCY 3 cut(s) 43, 49, 847
MhlI GDGCHC 3 cut(s) 194, 862, 1167
MluCI AATT 9 cut(s) 10, 377, 592, 680, 839, 1068, 1101, 1124, 1133
MlyI GAGTC 3 cut(s) 96, 775, 1123
MmeI TCCRAC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 1033
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 4 cut(s) 716, 837, 1104, 1131
MslI CAYNNNNRTG 1 cut(s) 950
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 584, 1037
MvaI CCWGG 2 cut(s) 584, 1037
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 352, 361
NcoI CCATGG 1 cut(s) 239
NdeII GATC 5 cut(s) 43, 49, 114, 610, 847
NlaIII CATG 5 cut(s) 153, 243, 359, 933, 1035
NlaIV GGNNCC 4 cut(s) 45, 51, 200, 859
NmuCI GTSAC 5 cut(s) 145, 336, 559, 943, 1021
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 2 cut(s) 359, 1035
NspV TTCGAA 1 cut(s) 1061
OliI CACNNNNGTG 1 cut(s) 950
PaeI GCATGC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 7 cut(s) 103, 316, 460, 634, 694, 865, 1040
PflFI GACNNNGTC 1 cut(s) 1113
PkrI GCNGC 5 cut(s) 282, 331, 345, 473, 735
PleI GAGTC 3 cut(s) 95, 774, 1122
PpsI GAGTC 3 cut(s) 95, 774, 1122
Ppu21I YACGTR 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1053
Psp6I CCWGG 2 cut(s) 582, 1035
PspEI GGTNACC 1 cut(s) 1021
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 2 cut(s) 582, 1035
PspN4I GGNNCC 4 cut(s) 45, 51, 200, 859
PspPI GGNCC 2 cut(s) 907, 1053
PspPPI RGGWCCY 1 cut(s) 1053
PsuI RGATCY 3 cut(s) 43, 49, 847
PsyI GACNNNGTC 1 cut(s) 1113
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
RseI CAYNNNNRTG 1 cut(s) 950
SaqAI TTAA 4 cut(s) 716, 837, 1104, 1131
SatI GCNGC 5 cut(s) 281, 330, 344, 472, 734
Sau3AI GATC 5 cut(s) 43, 49, 114, 610, 847
Sau96I GGNCC 2 cut(s) 907, 1053
SchI GAGTC 3 cut(s) 96, 775, 1123
ScrFI CCNGG 2 cut(s) 584, 1037
SduI GDGCHC 3 cut(s) 194, 862, 1167
SexAI ACCWGGT 1 cut(s) 582
SfaNI GCATC 2 cut(s) 890, 1018
SfuI TTCGAA 1 cut(s) 1061
SinI GGWCC 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
SphI GCATGC 1 cut(s) 1035
Sse9I AATT 9 cut(s) 10, 377, 592, 680, 839, 1068, 1101, 1124, 1133
SsiI CCGC 2 cut(s) 344, 1150
SspMI CTAG 3 cut(s) 230, 789, 897
StyD4I CCNGG 2 cut(s) 582, 1035
StyI CCWWGG 2 cut(s) 171, 239
TaaI ACNGT 3 cut(s) 17, 166, 749
TaiI ACGT 1 cut(s) 943
TaqI TCGA 3 cut(s) 288, 990, 1061
TaqII GACCGA 1 cut(s) 1040
TasI AATT 9 cut(s) 10, 377, 592, 680, 839, 1068, 1101, 1124, 1133
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 7 cut(s) 103, 316, 460, 634, 694, 865, 1040
Tru1I TTAA 4 cut(s) 716, 837, 1104, 1131
Tru9I TTAA 4 cut(s) 716, 837, 1104, 1131
TscAI CASTG 4 cut(s) 345, 517, 802, 952
TseFI GTSAC 5 cut(s) 145, 336, 559, 943, 1021
TseI GCWGC 4 cut(s) 280, 329, 471, 733
Tsp45I GTSAC 5 cut(s) 145, 336, 559, 943, 1021
TspDTI ATGAA 4 cut(s) 317, 816, 891, 1137
TspGWI ACGGA 1 cut(s) 1126
TspRI CASTG 4 cut(s) 345, 517, 802, 952
Tth111I GACNNNGTC 1 cut(s) 1113
VneI GTGCAC 1 cut(s) 1163
VpaK11BI GGWCC 1 cut(s) 1053
XapI RAATTY 2 cut(s) 377, 839
XceI RCATGY 2 cut(s) 359, 1035
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 3 cut(s) 230, 789, 897
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.