Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005044.1

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Reverse (-)

123981 .. 125865

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

atgtggggtcttgcttttcctgtttgctatggtacaactagtgcagttttcaaatttggttttggatgtgggagtgtttctaggtactctgaacttagacttgctagcaattgtgagcccaacaagggctcttcttttgtgtcggcttgggctttggaggaacaagcttttgggaatgagattagtgtagacaaatcgcaacatgggttgttaggggaatgtgagagcaaggatgttgttgtggagggaattgaggagagtgaaattgttgatgtgcgtgcgctggcatcaagcttacagtttgcgaaaacagcagatgatgtggaagaggttctgaaggacaagggtaatttgcctcttcaagtattctcatccatgatcaggggttttggaagagacaagttgatggattccgcgtttgctgttgttgaatggcttaagaggaggaaggaagaaactaatgtgaagcaatctaaacactttggagaaatggataaagtcttggctgatatgacgcaggaaggggtggaaccgaatgttataacttacaatactataatggcaatttatgtagaacaaggactaagtagtaaggcccttgatgttcttgaggatattcagaagaagggcttgattccatcttcagtgacctactctacagcattgctggcttatcagagaatgcaagatggagttggagccttggagttctttgtcaaggtcggagaaaagtatcgtaatggtgatatatgtaaagtttcagaagaagactgggaaaatgaatttctaaagctcgagaactttacaaaacgtgtttgctaccaagtgatgcggcggtggcttgtggtggatgataatttaagcatcagtgtgctaaaacttctagtaaagatggataatgccggggtaccacttggtcgggcagagcttgagcgccttttgtgggcctgtacccgtgaagaccattataatgtggcaaaagaattgtatagtaggataagagaaaggcattctgaaataagtctatctgtctgtaatcatgttatttgggtgatgggaaaggctaagaaatggtgggcagctttggagatttatgaggatatgctggacaaggggccaaagccaaataacatgtcatatgaattggtagtatctcactttaatgttcttctgactgctgctagaaaaaagggaatttggagatggggtgtcaggttgctcaacaagatggaagagaaaggtcttaaaccaagaagtaaggaatggaatgcagttctagttgcctgttctaaggctgcagaaacttctgctgctgttcagatttttagaagaatggtagaacaaggtcaaaaacccacaatcctttcttatggggccttgctcagtgctcttgaaaaggggaaactctatgatgaggctcaccaggtgtgggaacatatgatcaaggttggtgtaaaacccaacctgtatgcgtacacaatcatggcctcagttttcagtggacaaggaaaatttaatttggtggagaccattgttcaagagatggtttcatcagggattgagccaacggtagtcacatacaatgcaattattagtggctgtgcacgaaatgattcaagcagtgctgatgcatatgactggtttgatcggatgaaagctaacaatattcctccaaacaatgttacttatgaaatgatgatcgaggctcttgctaaagaaggtaaaccaaggcttgcatacgagttatatttgagggctcaaaaccagggcattcacctctctgcaaagcttatgatattttggtccaaccctcattggtttctggagctagttttgatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

613

Amino Acids

69.32

Weight (kDa)

6.17

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	166 - 225	2.7e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	178 - 222	4.2e-11	PPR repeat family
PPR_long	PF17177	308 - 463	1.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	405 - 464	1e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	428 - 582	7.7e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	452 - 497	3.1e-08	PPR repeat family
PPR_3	PF13812	478 - 535	4.4e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	499 - 536	1.6e-06	PPR repeat family
PPR_3	PF13812	511 - 570	1.8e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	543 - 572	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	542, 969
Acc65I	GGTACC	1 cut(s)	907
AccB1I	GGYRCC	1 cut(s)	907
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	416
AciI	CCGC	3 cut(s)	414, 832, 835
AcsI	RAATTY	4 cut(s)	53, 782, 1194, 1511
AcuI	CTGAAG	2 cut(s)	356, 627
AdeI	CACNNNGTG	1 cut(s)	1426
AfaI	GTAC	5 cut(s)	34, 86, 909, 952, 1475
AfiI	CCNNNNNNNGG	4 cut(s)	125, 381, 943, 1429
AflII	CTTAAG	1 cut(s)	437
AflIII	ACRYGT	2 cut(s)	811, 1131
AgsI	TTSAA	6 cut(s)	52, 362, 431, 1394, 1538, 1617
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	1422, 1764
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	8 cut(s)	167, 294, 793, 928, 1082, 1658, 1789, 1828
AluI	AGCT	8 cut(s)	167, 294, 793, 928, 1082, 1658, 1789, 1828
Alw21I	GWGCWC	2 cut(s)	1390, 1606
Alw26I	GTCTC	2 cut(s)	390, 1520
Alw44I	GTGCAC	1 cut(s)	1602
Ama87I	CYCGRG	1 cut(s)	794
AoxI	GGCC	5 cut(s)	594, 945, 1115, 1374, 1485
ApaLI	GTGCAC	1 cut(s)	1602
ApeKI	GCWGC	4 cut(s)	1079, 1178, 1295, 1310
ApoI	RAATTY	4 cut(s)	53, 782, 1194, 1511
ArsI	GACNNNNNNTTYG	2 cut(s)	1118, 1150
Asp700I	GAANNNNTTC	2 cut(s)	330, 1612
Asp718I	GGTACC	1 cut(s)	907
AspLEI	GCGC	2 cut(s)	283, 936
AspS9I	GGNCC	5 cut(s)	595, 945, 1115, 1374, 1803
AsuC2I	CCSGG	1 cut(s)	904
AsuHPI	GGTGA	4 cut(s)	755, 1063, 1412, 1766
AsuNHI	GCTAGC	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	794
AvaII	GGWCC	1 cut(s)	1803
BaeGI	GKGCMC	1 cut(s)	1606
BanI	GGYRCC	1 cut(s)	907
BanII	GRGCYC	3 cut(s)	120, 131, 1759
BbsI	GAAGAC	2 cut(s)	774, 966
Bbv12I	GWGCWC	2 cut(s)	1390, 1606
BbvI	GCAGC	4 cut(s)	1091, 1165, 1282, 1297
BccI	CCATC	8 cut(s)	400, 646, 683, 886, 1048, 1197, 1222, 1537
BcgI	CGANNNNNNTGC	2 cut(s)	1691, 1725
BciT130I	CCWGG	2 cut(s)	1424, 1766
BclI	TGATCA	2 cut(s)	378, 1440
BcnI	CCSGG	1 cut(s)	904
BcoDI	GTCTC	2 cut(s)	390, 1520
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	7 cut(s)	39, 81, 105, 884, 1182, 1277, 1829
BfmI	CTRYAG	2 cut(s)	657, 1296
BfoI	RGCGCY	1 cut(s)	937
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	5 cut(s)	833, 1080, 1179, 1296, 1311
BlsI	GCNGC	5 cut(s)	834, 1081, 1180, 1297, 1312
Bme1390I	CCNGG	3 cut(s)	904, 1424, 1766
Bme18I	GGWCC	1 cut(s)	1803
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	5 cut(s)	595, 945, 1115, 1374, 1803
BmiI	GGNNCC	5 cut(s)	531, 700, 909, 1116, 1375
BmrFI	CCNGG	3 cut(s)	904, 1424, 1766
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	4 cut(s)	296, 819, 873, 1618
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	2 cut(s)	774, 966
BpuEI	CTTGAG	2 cut(s)	629, 950
BpuMI	CCSGG	1 cut(s)	904
BsaI	GGTCTC	1 cut(s)	1520
BsaJI	CCNNGG	4 cut(s)	702, 903, 1727, 1765
BsaXI	ACNNNNNCTCC	2 cut(s)	1192, 1222
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 381, 943, 1429
Bse1I	ACTGG	2 cut(s)	776, 1643
Bse3DI	GCAATG	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	1424, 1766
BseDI	CCNNGG	4 cut(s)	702, 903, 1727, 1765
BseGI	GGATG	5 cut(s)	71, 238, 371, 856, 1656
BseLI	CCNNNNNNNGG	4 cut(s)	125, 381, 943, 1429
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	2 cut(s)	1396, 1503
BseNI	ACTGG	2 cut(s)	776, 1643
BseRI	GAGGAG	2 cut(s)	269, 457
BseSI	GKGCMC	1 cut(s)	1606
BseXI	GCAGC	4 cut(s)	1091, 1165, 1282, 1297
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	5 cut(s)	596, 947, 1117, 1376, 1487
BshNI	GGYRCC	1 cut(s)	907
BsiHKAI	GWGCWC	2 cut(s)	1390, 1606
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	903
BslI	CCNNNNNNNGG	4 cut(s)	125, 381, 943, 1429
BsmAI	GTCTC	2 cut(s)	390, 1520
BsmI	GAATGC	4 cut(s)	687, 1009, 1273, 1770
BsnI	GGCC	5 cut(s)	596, 947, 1117, 1376, 1487
Bso31I	GGTCTC	1 cut(s)	1520
BsoBI	CYCGRG	1 cut(s)	794
Bsp1286I	GDGCHC	5 cut(s)	120, 131, 1390, 1606, 1759
Bsp143I	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
BspACI	CCGC	3 cut(s)	414, 832, 835
BspANI	GGCC	5 cut(s)	596, 947, 1117, 1376, 1487
BspCNI	CTCAG	2 cut(s)	1395, 1502
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	5 cut(s)	531, 700, 909, 1116, 1375
BspMAI	CTGCAG	1 cut(s)	1300
BspOI	GCTAGC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	907
BspTI	CTTAAG	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	1520
BsrDI	GCAATG	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	776, 1643
BssECI	CCNNGG	4 cut(s)	702, 903, 1727, 1765
BssMI	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
BssT1I	CCWWGG	2 cut(s)	702, 1727
Bst2UI	CCWGG	2 cut(s)	1424, 1766
Bst4CI	ACNGT	2 cut(s)	300, 1570
Bst6I	CTCTTC	5 cut(s)	136, 321, 363, 388, 1227
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	5 cut(s)	106, 279, 285, 669, 1734
BstDEI	CTNAG	6 cut(s)	95, 584, 1065, 1290, 1382, 1489
BstF5I	GGATG	5 cut(s)	71, 238, 371, 856, 1656
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	937
BstHHI	GCGC	2 cut(s)	283, 936
BstKTI	GATC	5 cut(s)	381, 1443, 1648, 1701, 1839
BstMAI	GTCTC	2 cut(s)	390, 1520
BstMBI	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 668, 838
BstNI	CCWGG	2 cut(s)	1424, 1766
BstNSI	RCATGY	1 cut(s)	1135
BstSCI	CCNGG	3 cut(s)	902, 1422, 1764
BstSFI	CTRYAG	2 cut(s)	657, 1296
BstSLI	GKGCMC	1 cut(s)	1606
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	1091, 1165, 1282, 1297
BstV2I	GAAGAC	2 cut(s)	774, 966
BsuRI	GGCC	5 cut(s)	596, 947, 1117, 1376, 1487
BtsCI	GGATG	5 cut(s)	71, 238, 371, 856, 1656
BtsI	GCAGTG	1 cut(s)	1627
BtsIMutI	CAGTG	5 cut(s)	651, 874, 1390, 1504, 1627
Cac8I	GCNNGC	5 cut(s)	106, 279, 285, 669, 1734
CfoI	GCGC	2 cut(s)	283, 936
Cfr13I	GGNCC	5 cut(s)	595, 945, 1115, 1374, 1803
CseI	GACGC	1 cut(s)	523
CsiI	ACCWGGT	1 cut(s)	1422
Csp6I	GTAC	5 cut(s)	33, 85, 908, 951, 1474
CviAII	CATG	5 cut(s)	203, 376, 1040, 1132, 1483
CviQI	GTAC	5 cut(s)	33, 85, 908, 951, 1474
DdeI	CTNAG	6 cut(s)	95, 584, 1065, 1290, 1382, 1489
DpnI	GATC	5 cut(s)	380, 1442, 1647, 1700, 1838
DpnII	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
DraIII	CACNNNGTG	1 cut(s)	1426
Eam1104I	CTCTTC	5 cut(s)	136, 321, 363, 388, 1227
EarI	CTCTTC	5 cut(s)	136, 321, 363, 388, 1227
Eco130I	CCWWGG	2 cut(s)	702, 1727
Eco24I	GRGCYC	3 cut(s)	120, 131, 1759
Eco31I	GGTCTC	1 cut(s)	1520
Eco47I	GGWCC	1 cut(s)	1803
Eco57I	CTGAAG	2 cut(s)	356, 627
Eco88I	CYCGRG	1 cut(s)	794
EcoO109I	RGGNCCY	2 cut(s)	595, 1374
EcoRII	CCWGG	2 cut(s)	1422, 1764
EcoT14I	CCWWGG	2 cut(s)	702, 1727
EcoT22I	ATGCAT	1 cut(s)	1633
EcoT38I	GRGCYC	3 cut(s)	120, 131, 1759
ErhI	CCWWGG	2 cut(s)	702, 1727
FaeI	CATG	5 cut(s)	206, 379, 1043, 1135, 1486
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	5 cut(s)	202, 375, 1039, 1131, 1482
FauNDI	CATATG	3 cut(s)	1138, 1437, 1633
FbaI	TGATCA	2 cut(s)	378, 1440
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	833, 1080, 1179, 1296, 1311
FokI	GGATG	5 cut(s)	78, 245, 358, 863, 1663
FriOI	GRGCYC	3 cut(s)	120, 131, 1759
Fsp4HI	GCNGC	5 cut(s)	833, 1080, 1179, 1296, 1311
FspBI	CTAG	7 cut(s)	39, 81, 105, 884, 1182, 1277, 1829
GlaI	GCGC	2 cut(s)	282, 935
GluI	GCNGC	5 cut(s)	833, 1080, 1179, 1296, 1311
HaeII	RGCGCY	1 cut(s)	937
HaeIII	GGCC	5 cut(s)	596, 947, 1117, 1376, 1487
HapII	CCGG	1 cut(s)	903
HgaI	GACGC	1 cut(s)	523
HhaI	GCGC	2 cut(s)	283, 936
Hin1II	CATG	5 cut(s)	206, 379, 1043, 1135, 1486
Hin6I	GCGC	2 cut(s)	281, 934
HinP1I	GCGC	2 cut(s)	281, 934
HindIII	AAGCTT	3 cut(s)	165, 292, 1787
HinfI	GANTC	3 cut(s)	410, 634, 1613
HpaII	CCGG	1 cut(s)	903
HphI	GGTGA	4 cut(s)	755, 1063, 1412, 1766
Hpy166II	GTNNAC	5 cut(s)	190, 1476, 1502, 1604, 1724
Hpy188III	TCNNGA	5 cut(s)	608, 796, 1391, 1538, 1823
Hpy8I	GTNNAC	5 cut(s)	190, 1476, 1502, 1604, 1724
HpyAV	CCTTC	5 cut(s)	331, 442, 515, 619, 1712
HpyCH4III	ACNGT	2 cut(s)	300, 1570
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	9 cut(s)	44, 685, 1271, 1298, 1586, 1604, 1631, 1736, 1784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 668, 838
HpyF3I	CTNAG	6 cut(s)	95, 584, 1065, 1290, 1382, 1489
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	5 cut(s)	206, 379, 1043, 1135, 1486
HspAI	GCGC	2 cut(s)	281, 934
KpnI	GGTACC	1 cut(s)	911
Ksp22I	TGATCA	2 cut(s)	378, 1440
Kzo9I	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	698, 1825
Lsp1109I	GCAGC	4 cut(s)	1091, 1165, 1282, 1297
LweI	GCATC	4 cut(s)	296, 819, 873, 1618
MabI	ACCWGGT	1 cut(s)	1422
MaeI	CTAG	7 cut(s)	39, 81, 105, 884, 1182, 1277, 1829
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	3 cut(s)	646, 1573, 1681
MalI	GATC	5 cut(s)	380, 1442, 1647, 1700, 1838
MboI	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	5 cut(s)	120, 131, 1390, 1606, 1759
MmeI	TCCRAC	3 cut(s)	676, 703, 1830
Mph1103I	ATGCAT	1 cut(s)	1633
MroXI	GAANNNNTTC	2 cut(s)	330, 1612
MseI	TTAA	5 cut(s)	438, 860, 1161, 1245, 1515
MslI	CAYNNNNRTG	4 cut(s)	869, 969, 1161, 1481
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	903
MspR9I	CCNGG	3 cut(s)	904, 1424, 1766
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	4 cut(s)	687, 1009, 1273, 1770
MvaI	CCWGG	2 cut(s)	1424, 1766
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	311, 668, 838
NciI	CCSGG	1 cut(s)	904
NdeI	CATATG	3 cut(s)	1138, 1437, 1633
NdeII	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	5 cut(s)	206, 379, 1043, 1135, 1486
NlaIV	GGNNCC	5 cut(s)	531, 700, 909, 1116, 1375
NmuCI	GTSAC	2 cut(s)	646, 1573
NsiI	ATGCAT	1 cut(s)	1633
NspI	RCATGY	1 cut(s)	1135
PaeR7I	CTCGAG	1 cut(s)	794
PciI	ACATGT	1 cut(s)	1131
PciSI	GCTCTTC	1 cut(s)	136
PctI	GAATGC	4 cut(s)	687, 1009, 1273, 1770
PdmI	GAANNNNTTC	2 cut(s)	330, 1612
PfeI	GAWTC	3 cut(s)	410, 634, 1613
PkrI	GCNGC	5 cut(s)	834, 1081, 1180, 1297, 1312
PscI	ACATGT	1 cut(s)	1131
PsiI	TTATAA	2 cut(s)	542, 969
Psp6I	CCWGG	2 cut(s)	1422, 1764
PspGI	CCWGG	2 cut(s)	1422, 1764
PspN4I	GGNNCC	5 cut(s)	531, 700, 909, 1116, 1375
PspPI	GGNCC	5 cut(s)	595, 945, 1115, 1374, 1803
PstI	CTGCAG	1 cut(s)	1300
RsaI	GTAC	5 cut(s)	34, 86, 909, 952, 1475
RsaNI	GTAC	5 cut(s)	33, 85, 908, 951, 1474
RseI	CAYNNNNRTG	4 cut(s)	869, 969, 1161, 1481
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	5 cut(s)	438, 860, 1161, 1245, 1515
SatI	GCNGC	5 cut(s)	833, 1080, 1179, 1296, 1311
Sau3AI	GATC	5 cut(s)	378, 1440, 1645, 1698, 1836
Sau96I	GGNCC	5 cut(s)	595, 945, 1115, 1374, 1803
ScrFI	CCNGG	3 cut(s)	904, 1424, 1766
SduI	GDGCHC	5 cut(s)	120, 131, 1390, 1606, 1759
SexAI	ACCWGGT	1 cut(s)	1422
SfaNI	GCATC	4 cut(s)	296, 819, 873, 1618
SfcI	CTRYAG	2 cut(s)	657, 1296
Sfr274I	CTCGAG	1 cut(s)	794
SinI	GGWCC	1 cut(s)	1803
SlaI	CTCGAG	1 cut(s)	794
SmiMI	CAYNNNNRTG	4 cut(s)	869, 969, 1161, 1481
SmlI	CTYRAG	4 cut(s)	437, 608, 794, 929
SmoI	CTYRAG	4 cut(s)	437, 608, 794, 929
SpeI	ACTAGT	1 cut(s)	38
SsiI	CCGC	3 cut(s)	414, 832, 835
SspI	AATATT	1 cut(s)	1666
SspMI	CTAG	7 cut(s)	39, 81, 105, 884, 1182, 1277, 1829
StyD4I	CCNGG	3 cut(s)	902, 1422, 1764
StyI	CCWWGG	2 cut(s)	702, 1727
TaaI	ACNGT	2 cut(s)	300, 1570
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	2 cut(s)	795, 1701
TauI	GCSGC	1 cut(s)	835
TfiI	GAWTC	3 cut(s)	410, 634, 1613
Tru1I	TTAA	5 cut(s)	438, 860, 1161, 1245, 1515
Tru9I	TTAA	5 cut(s)	438, 860, 1161, 1245, 1515
TscAI	CASTG	5 cut(s)	651, 874, 1390, 1504, 1627
TseFI	GTSAC	2 cut(s)	646, 1573
TseI	GCWGC	4 cut(s)	1079, 1178, 1295, 1310
Tsp45I	GTSAC	2 cut(s)	646, 1573
TspDTI	ATGAA	5 cut(s)	795, 1155, 1539, 1667, 1704
TspRI	CASTG	5 cut(s)	651, 874, 1390, 1504, 1627
Vha464I	CTTAAG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	1602
VpaK11BI	GGWCC	1 cut(s)	1803
XapI	RAATTY	4 cut(s)	53, 782, 1194, 1511
XceI	RCATGY	1 cut(s)	1135
XhoI	CTCGAG	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	2 cut(s)	330, 1612
XspI	CTAG	7 cut(s)	39, 81, 105, 884, 1182, 1277, 1829
Zsp2I	ATGCAT	1 cut(s)	1633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.