Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005098.1

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Forward (+)

89910 .. 91659

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgagtgaaataccaccggcttttagtgaatccgaagcatatgctgcggccgagtcaacgcccatgaagctagtagaactcactgagttcccgatcactttggactcggtgatcagcgtcactgtgccgaggccgaagaagtgtcggacaaaggaggaaaaggaagaggaagaggaggtgttagcgattcaagggatcgagtttgtggcggatgagtttgtgaagttcgacgtgcatgtcaacgatgacgaagaagatctgagtcgacccgataactcggaatttgcggggagctttgtgtatttgccgcatcggaggaagacagtgacgacgagtcttaggcttgggataacggacttgttggacgatttgggtgctgacggtgatgacagtatcaagagagagaagtcaccttccaccttgctgtgctccggtgaccagtggccggcgcggtctccggcgaccggtgaccggactccggcgaatggtgaccggattccgggaaccggtaaccgaaatccggcgaccgatgactggaatccggaatccggatattattgccccccagtaatcatattactgccccccagtaacttatcaaaacaccacactatagtgatccttgtccctcatatcaaagtctactgggggccaataatgtgtctactgccccccaatagaccatcaaacaaaccccacagttacattgcaattccttcctcattctggatgcaatcgactggctcgggtcggtggttgaacgccggagagggagtcgtcagcgtctgggcggtcgaggtaagcttgtacaggtggagtcttcgctggtgggcgtcgttgaggccactgagatcgctattcgggctggaatcgctggtggagtcttcgcttgattttttcgtcgttaaggccactgagctcgctgatcgggctggagtcgtcgtcctgtccctgtcggcgtcgagatggccggagtcagaggagctgatggagtctgggtcaaatctggtgtatggttatgggtttggatatgtgtatggcggagagagagagagtgatagttggagagatattagactgggggtaaaaatgtcacttaggtttaaattgggtaagtgggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

374

Amino Acids

41.76

Weight (kDa)

5.03

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	30 - 132	3.8e-38	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccI	GTMKAC	3 cut(s)	265, 642, 664
AccII	CGCG	1 cut(s)	451
AccIII	TCCGGA	2 cut(s)	541, 548
AciI	CCGC	7 cut(s)	47, 209, 287, 308, 451, 791, 1041
AclWI	GGATC	2 cut(s)	203, 613
AcoI	YGGCCR	3 cut(s)	48, 443, 968
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	2 cut(s)	833, 959
AfaI	GTAC	1 cut(s)	809
AgeI	ACCGGT	2 cut(s)	464, 506
AgsI	TTSAA	2 cut(s)	191, 760
AhdI	GACNNNNNGTC	1 cut(s)	333
AjiI	CACGTC	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	5 cut(s)	70, 294, 804, 919, 985
AluI	AGCT	5 cut(s)	70, 294, 804, 919, 985
Alw21I	GWGCWC	2 cut(s)	431, 921
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	203, 613
AlwNI	CAGNNNCTG	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	745
Aor13HI	TCCGGA	2 cut(s)	541, 548
AoxI	GGCC	7 cut(s)	48, 131, 443, 650, 842, 909, 968
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	281
AsiGI	ACCGGT	2 cut(s)	464, 506
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	6 cut(s)	121, 395, 402, 446, 479, 500
AvaI	CYCGRG	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	921
BbsI	GAAGAC	3 cut(s)	326, 812, 876
Bbv12I	GWGCWC	2 cut(s)	431, 921
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	691, 960, 982
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 356, 390
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	612
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	3 cut(s)	45, 48, 308
BlsI	GCNGC	3 cut(s)	46, 49, 309
Bme1390I	CCNGG	1 cut(s)	501
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	745
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	505, 651
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	4 cut(s)	560, 582, 655, 1088
BmsI	GCATC	2 cut(s)	319, 720
BmuI	ACTGGG	4 cut(s)	560, 582, 655, 1088
BpiI	GAAGAC	3 cut(s)	326, 812, 876
BpmI	CTGGAG	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	2 cut(s)	833, 959
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	7 cut(s)	431, 464, 471, 492, 506, 541, 548
BsaXI	ACNNNNNCTCC	6 cut(s)	759, 789, 927, 957, 983, 1013
Bse118I	RCCGGY	4 cut(s)	16, 445, 464, 506
Bse1I	ACTGG	7 cut(s)	439, 539, 566, 588, 650, 745, 1083
Bse3DI	GCAATG	1 cut(s)	705
BseAI	TCCGGA	2 cut(s)	541, 548
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	217, 735
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	4 cut(s)	75, 251, 839, 906
BseNI	ACTGG	7 cut(s)	439, 539, 566, 588, 650, 745, 1083
BseRI	GAGGAG	2 cut(s)	188, 995
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	451
Bsh1285I	CGRYCG	4 cut(s)	51, 465, 528, 795
BshFI	GGCC	7 cut(s)	50, 133, 445, 652, 844, 911, 970
BshTI	ACCGGT	2 cut(s)	464, 506
BsiEI	CGRYCG	4 cut(s)	51, 465, 528, 795
BsiHKAI	GWGCWC	2 cut(s)	431, 921
BsiHKCI	CYCGRG	1 cut(s)	745
BslFI	GGGAC	2 cut(s)	611, 934
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	611, 934
BsnI	GGCC	7 cut(s)	50, 133, 445, 652, 844, 911, 970
Bso31I	GGTCTC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	431, 921
Bsp13I	TCCGGA	2 cut(s)	541, 548
Bsp1407I	TGTACA	1 cut(s)	807
Bsp143I	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
BspACI	CCGC	7 cut(s)	47, 209, 287, 308, 451, 791, 1041
BspANI	GGCC	7 cut(s)	50, 133, 445, 652, 844, 911, 970
BspCNI	CTCAG	4 cut(s)	76, 252, 840, 907
BspEI	TCCGGA	2 cut(s)	541, 548
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	505, 651
BspPI	GGATC	2 cut(s)	203, 613
BspTNI	GGTCTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	705
BsrFI	RCCGGY	4 cut(s)	16, 445, 464, 506
BsrGI	TGTACA	1 cut(s)	807
BsrI	ACTGG	7 cut(s)	439, 539, 566, 588, 650, 745, 1083
BssAI	RCCGGY	4 cut(s)	16, 445, 464, 506
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
BssNI	GRCGYC	2 cut(s)	833, 959
Bst4CI	ACNGT	5 cut(s)	124, 325, 383, 392, 701
Bst6I	CTCTTC	2 cut(s)	159, 165
BstACI	GRCGYC	2 cut(s)	833, 959
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	447, 921
BstDEI	CTNAG	6 cut(s)	84, 260, 338, 848, 915, 1097
BstEII	GGTNACC	4 cut(s)	434, 467, 488, 509
BstF5I	GGATG	2 cut(s)	217, 735
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	7 cut(s)	96, 114, 198, 259, 621, 854, 928
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
BstMCI	CGRYCG	4 cut(s)	51, 465, 528, 795
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 67, 862, 871, 929
BstNSI	RCATGY	1 cut(s)	239
BstPI	GGTNACC	4 cut(s)	434, 467, 488, 509
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	3 cut(s)	326, 812, 876
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	7 cut(s)	50, 133, 445, 652, 844, 911, 970
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	217, 735
BtsIMutI	CAGTG	6 cut(s)	81, 120, 330, 446, 845, 912
Cac8I	GCNNGC	2 cut(s)	447, 921
CaiI	CAGNNNCTG	1 cut(s)	786
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	4 cut(s)	16, 445, 464, 506
Cfr13I	GGNCC	1 cut(s)	650
CseI	GACGC	4 cut(s)	106, 772, 822, 948
Csp6I	GTAC	1 cut(s)	808
CspAI	ACCGGT	2 cut(s)	464, 506
CviAII	CATG	2 cut(s)	64, 236
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	6 cut(s)	84, 260, 338, 848, 915, 1097
DpnI	GATC	7 cut(s)	95, 113, 197, 258, 620, 853, 927
DpnII	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
DraI	TTTAAA	1 cut(s)	1105
DrdI	GACNNNNNNGTC	1 cut(s)	236
DriI	GACNNNNNGTC	1 cut(s)	333
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	3 cut(s)	48, 443, 968
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	159, 165
Eam1105I	GACNNNNNGTC	1 cut(s)	333
EarI	CTCTTC	2 cut(s)	159, 165
EciI	GGCGGA	2 cut(s)	224, 1056
Ecl136II	GAGCTC	1 cut(s)	919
EclXI	CGGCCG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	459
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	919
Eco88I	CYCGRG	1 cut(s)	745
Eco91I	GGTNACC	4 cut(s)	434, 467, 488, 509
EcoICRI	GAGCTC	1 cut(s)	919
EcoO65I	GGTNACC	4 cut(s)	434, 467, 488, 509
EcoT38I	GRGCYC	1 cut(s)	921
FaeI	CATG	2 cut(s)	67, 239
FaqI	GGGAC	2 cut(s)	611, 934
FatI	CATG	2 cut(s)	63, 235
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	111
FblI	GTMKAC	3 cut(s)	265, 642, 664
Fnu4HI	GCNGC	3 cut(s)	45, 48, 308
FokI	GGATG	2 cut(s)	224, 742
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	3 cut(s)	45, 48, 308
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	3 cut(s)	45, 48, 308
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	7 cut(s)	50, 133, 445, 652, 844, 911, 970
HgaI	GACGC	4 cut(s)	106, 772, 822, 948
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	2 cut(s)	833, 959
Hin1II	CATG	2 cut(s)	67, 239
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	3 cut(s)	57, 241, 266
HindII	GTYRAC	3 cut(s)	57, 241, 266
HindIII	AAGCTT	1 cut(s)	802
HphI	GGTGA	6 cut(s)	121, 395, 402, 446, 479, 500
Hpy166II	GTNNAC	5 cut(s)	57, 241, 266, 643, 665
Hpy188I	TCNGA	6 cut(s)	34, 147, 261, 280, 315, 979
Hpy188III	TCNNGA	6 cut(s)	91, 397, 542, 549, 727, 963
Hpy8I	GTNNAC	5 cut(s)	57, 241, 266, 643, 665
Hpy99I	CGWCG	6 cut(s)	233, 334, 838, 905, 944, 964
HpyAV	CCTTC	2 cut(s)	423, 726
HpyCH4III	ACNGT	5 cut(s)	124, 325, 383, 392, 701
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	235, 710, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 67, 862, 871, 929
HpyF3I	CTNAG	6 cut(s)	84, 260, 338, 848, 915, 1097
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	833, 959
Hsp92II	CATG	2 cut(s)	67, 239
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	2 cut(s)	541, 548
KroI	GCCGGC	1 cut(s)	445
KroNI	GCCGGC	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
LmnI	GCTCC	3 cut(s)	291, 434, 982
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	319, 720
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	231
MalI	GATC	7 cut(s)	95, 113, 197, 258, 620, 853, 927
MboI	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
MboII	GAAGA	8 cut(s)	148, 176, 182, 263, 266, 331, 812, 876
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	431, 921
MluCI	AATT	3 cut(s)	281, 711, 1106
MmeI	TCCRAC	3 cut(s)	125, 342, 1043
MroI	TCCGGA	2 cut(s)	541, 548
MroNI	GCCGGC	1 cut(s)	445
MseI	TTAA	3 cut(s)	906, 1104, 1123
MslI	CAYNNNNRTG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	5 cut(s)	44, 67, 862, 871, 929
NaeI	GCCGGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
NgoMIV	GCCGGC	1 cut(s)	445
NlaIII	CATG	2 cut(s)	67, 239
NlaIV	GGNNCC	2 cut(s)	505, 651
NmeAIII	GCCGAG	2 cut(s)	76, 153
NmuCI	GTSAC	7 cut(s)	118, 325, 408, 434, 467, 488, 1092
NspI	RCATGY	1 cut(s)	239
OliI	CACNNNNGTG	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	447
PfeI	GAWTC	6 cut(s)	29, 187, 496, 538, 545, 869
PfoI	TCCNGGA	1 cut(s)	499
PinAI	ACCGGT	2 cut(s)	464, 506
PkrI	GCNGC	3 cut(s)	46, 49, 309
Psp124BI	GAGCTC	1 cut(s)	921
PspEI	GGTNACC	4 cut(s)	434, 467, 488, 509
PspN4I	GGNNCC	2 cut(s)	505, 651
PspPI	GGNCC	1 cut(s)	650
PstNI	CAGNNNCTG	1 cut(s)	786
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	921
SalI	GTCGAC	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	906, 1104, 1123
SatI	GCNGC	3 cut(s)	45, 48, 308
Sau3AI	GATC	7 cut(s)	93, 111, 195, 256, 618, 851, 925
Sau96I	GGNCC	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	431, 921
SfaNI	GCATC	2 cut(s)	319, 720
SfcI	CTRYAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	614
Sse9I	AATT	3 cut(s)	281, 711, 1106
SsiI	CCGC	7 cut(s)	47, 209, 287, 308, 451, 791, 1041
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	5 cut(s)	124, 325, 383, 392, 701
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	6 cut(s)	198, 228, 265, 737, 795, 962
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	3 cut(s)	281, 711, 1106
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	2 cut(s)	50, 310
TfiI	GAWTC	6 cut(s)	29, 187, 496, 538, 545, 869
Tru1I	TTAA	3 cut(s)	906, 1104, 1123
Tru9I	TTAA	3 cut(s)	906, 1104, 1123
TscAI	CASTG	6 cut(s)	88, 127, 330, 446, 852, 919
TseFI	GTSAC	7 cut(s)	118, 325, 408, 434, 467, 488, 1092
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	7 cut(s)	118, 325, 408, 434, 467, 488, 1092
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	6 cut(s)	88, 127, 330, 446, 852, 919
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	3 cut(s)	265, 642, 664
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.