Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005261.1

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Forward (+)

73164 .. 80770

Gene Structure 7607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

atggagttttcagtgtccaccccacgctattactatcccaatcccaaacccactactaccaccaccaccttttctctcaaacccccaaattcccaagcttcctcctcccctctctcctcatctaaccaacttcgtcgccccaaaaccatcaccactcctcctcctcagcccaccaaacccatctccaaaatcccctctaaccccttcaagaacctcactaatcccacccatgtccccactccaccgattattaccaccaccgattctaacacctcttctctcaccaacaagctctggctcaccagcaagctctctcctcctccaccgccaccagacatagaagacgacgaagaagaagctgtcaagtacaatgaacccataaagaaatcgcagctgcccaaagtcgagttccggcaagagggcaagattttcgtggggaatttacccaactggctcaagaaaaacgaagtctccgagtttttccggcaattcggaccgataacgaatgtgattctgatcaagggccacgacagcaccgagagaaatgctggtttcggattcgttatatacggcggccccaatgcgaccaagtctgccatgaaggcggtggagtttgacggcgtggagtttcacgggagggttctgactgttaagttggacgatgggggcagattgaaggaaaaagctgagcagaggacgcggtggattgagcaagactccggcggcggtgttgagtaccgagctcggtctaagtggcacaaggagaggcagagctctcgcaatgccttgcgcaaggttatggagacggagccggagaactggcaggcggtggttcagacttttgagaggattaacaagccttctagaggagagtatggtctgatggtcaagtattatgctaggcgaggggacatgcatcgtgctcgtgaaacatttgagagcatgagagcaagaggaatagagccgacttcacatgtatacacaagcctgattcacgcttatgcagttggcagagacatggaagaagcattatcttgtgttagaaaaatgaaggatgagggcattgaaatgagtttggtgacttacagtattattgttgggggatttgcaaaagttggcaatgccgaagctgcagatcactggtttaaggaggccaaagagagacatacaactttaaatgcaatcatttatgggaatattgtttatgctcattgtcaatcatgtaatatggatcgagctgaggcattggtacgagaaatggaagaagcaggtatagatgctcctatcgacatatatcacaccatgatggatggttacacaatggttggcaatgaagataaatgtttgattgtgtttgagcgactgaaggaatgcggctttacaccttctgtcatcagttatggatgtctgatcaatctttacatcaaggttggaaaagtttctaaggcattggaagtcagcaaaatgatggaaacagctagcataaaacataacatgaagacgtactccatgttgatcaatggattcttgaagttaaaagactgggctaatgcatttgcagttgtagaagatttgatgaaggatggtttgaagcccgatgtagtcctgtataataacattataacagcattttgtggaatgggtaacatgaatcgcgctgttcgcaccgtcaaagaaatgcagagggagaggcatagacctacatcacgtacgtttatgccgataatacatggttttgcaagagctggagatatgagaagagccctagagatttttgacatgatgcggatgagtggatgcattccaactgtccatactttcaatgctctagttcttggtcttgtggagaagcggcagatggagaaggctgttgaaatattggatgagatgacacttgcaggaattagtccaaatgaacacacatacacaactatcatgaatggttatgcatctttaggtgatactgggaaagctttcgagtatttttccaaattgaggaatgatggcctagagattgatgttttcacatatgaggcattgctgaaggcatgttgcaaagcaggcaaaatgcagagtgctttagctgtcaccaaggaaatgagtgctcaaaaaattccaaggaacacctttgtgtacaacatcttagttgatggatgggctcgaagaggtgatgtttgggaggctgctgacttgatgcagcaaatgaaacgggaaggggttcaacctgatatccactcctacacgtctttcataaatgcttgttgcaaggccggagacatgcagagagctgcaaaaacaattgaagagatgaaaacttttggagtgaagccaaatgttaaaacttataccacattgatacatggttgggcgcgtgcttctctaccggagaaggctttgagatgcttcaaggatatgaagttggctggattgaagccagacaaagctgtgtaccattgcttgatgacgtcactgttgtcaagggctactgttgctgaagcttacatttattctggtcttctgtctatctgcaaggagatgatagaatctggattgactgtggatatgggaactgcagttcactggtcgaggtgcttacgcaaaattgaaagaacaggtggtgagcttaccgaatccctgcagaagaccttccctcctgattggaactcttgtcatactttgtacgtgagttccgacgtagacagtgatgatgaagttgacattactagtgatggtgatgatgatgacatggagtttgctagtagaatagataacgttatgatgaccgatgaggatagtctaaagcacggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

936

Amino Acids

105.44

Weight (kDa)

7.77

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	143 - 215	2e-11	RNA recognition motif
PPR_2	PF13041	294 - 335	2.5e-08	PPR repeat family
TPR_24	PF23276	300 - 413	1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	305 - 378	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	318 - 369	6.8e-08	Pentatricopeptide repeat domain
PPR	PF01535	326 - 355	6e-06	PPR repeat
PPR_2	PF13041	326 - 371	1.3e-09	PPR repeat family
PPR_3	PF13812	416 - 474	2.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	451 - 559	7.2e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	462 - 511	4.2e-10	PPR repeat family
PPR_3	PF13812	521 - 576	8.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	528 - 561	9e-08	PPR repeat
PPR_2	PF13041	532 - 581	5.7e-11	PPR repeat family
TPR_24	PF23276	569 - 664	2.8e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	571 - 614	1.7e-08	PPR repeat family
PPR_3	PF13812	571 - 611	5.1e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	586 - 690	3e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	602 - 650	8.3e-14	PPR repeat family
PPR_2	PF13041	641 - 686	2e-10	PPR repeat family
PPR_3	PF13812	663 - 716	7.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	668 - 701	9.9e-07	PPR repeat
PPR_2	PF13041	673 - 720	1.3e-09	PPR repeat family
PPR_long	PF17177	677 - 822	8.2e-15	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	708 - 756	2.1e-14	PPR repeat family
PPR_3	PF13812	731 - 782	2.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	739 - 771	1.6e-07	PPR repeat
PPR_2	PF13041	742 - 790	4e-15	PPR repeat family
PPR	PF01535	746 - 775	2.8e-06	PPR repeat
PPR_3	PF13812	769 - 821	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	774 - 806	2.1e-06	PPR repeat
PPR_2	PF13041	781 - 824	4.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1622
AatII	GACGTC	1 cut(s)	2468
Acc16I	TGCGCA	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	1259
AccI	GTMKAC	2 cut(s)	978, 2697
AccII	CGCG	3 cut(s)	700, 1656, 2371
AclI	AACGTT	1 cut(s)	2772
AclWI	GGATC	1 cut(s)	1239
AcsI	RAATTY	3 cut(s)	88, 439, 2112
AcuI	CTGAAG	3 cut(s)	1385, 2063, 2514
AcyI	GRCGYC	1 cut(s)	2465
AfaI	GTAC	8 cut(s)	368, 737, 1251, 1505, 1711, 2135, 2450, 2681
AfiI	CCNNNNNNNGG	3 cut(s)	418, 866, 1995
AflIII	ACRYGT	2 cut(s)	973, 2241
AhlI	ACTAGT	1 cut(s)	2723
AjiI	CACGTC	1 cut(s)	2244
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AleI	CACNNNNGTG	1 cut(s)	2129
AloI	GAACNNNNNNTCC	2 cut(s)	2559, 2591
Alw21I	GWGCWC	4 cut(s)	745, 776, 925, 2107
Alw26I	GTCTC	5 cut(s)	475, 797, 1008, 1156, 2268
AlwI	GGATC	1 cut(s)	1239
AoxI	GGCC	5 cut(s)	523, 574, 1152, 2005, 2268
ApeKI	GCWGC	6 cut(s)	391, 394, 1130, 2183, 2197, 2288
ApoI	RAATTY	3 cut(s)	88, 439, 2112
ArsI	GACNNNNNNTTYG	2 cut(s)	2735, 2767
Asp700I	GAANNNNTTC	4 cut(s)	1438, 1973, 2217, 2645
AspLEI	GCGC	3 cut(s)	792, 1658, 2371
AspS9I	GGNCC	3 cut(s)	494, 523, 575
AsuHPI	GGTGA	9 cut(s)	142, 274, 292, 1090, 1970, 2080, 2180, 2630, 2744
AsuNHI	GCTAGC	1 cut(s)	1478
AvaII	GGWCC	1 cut(s)	494
BanII	GRGCYC	4 cut(s)	745, 776, 1765, 2161
BauI	CACGAG	1 cut(s)	924
BbsI	GAAGAC	4 cut(s)	348, 1505, 2507, 2648
Bbv12I	GWGCWC	4 cut(s)	745, 776, 925, 2107
BbvCI	CCTCAGC	2 cut(s)	165, 1239
BbvI	GCAGC	6 cut(s)	381, 403, 1117, 2170, 2209, 2275
BceAI	ACGGC	2 cut(s)	586, 634
BcgI	CGANNNNNNTGC	8 cut(s)	412, 446, 527, 561, 758, 792, 905, 939
BclI	TGATCA	3 cut(s)	516, 1410, 1515
BcoDI	GTCTC	5 cut(s)	475, 797, 1008, 1156, 2268
BcuI	ACTAGT	1 cut(s)	2723
BfaI	CTAG	8 cut(s)	864, 900, 1479, 1766, 1829, 2009, 2724, 2757
BfmI	CTRYAG	3 cut(s)	1131, 2571, 2636
BfuAI	ACCTGC	1 cut(s)	1259
BglI	GCCNNNNNGGC	1 cut(s)	602
BlpI	GCTNAGC	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	2244
BmgT120I	GGNCC	3 cut(s)	494, 523, 575
BmiI	GGNNCC	2 cut(s)	577, 810
BmrI	ACTGGG	2 cut(s)	1552, 1974
BmsI	GCATC	7 cut(s)	925, 1267, 1773, 1787, 1958, 2184, 2390
BmtI	GCTAGC	1 cut(s)	1482
BmuI	ACTGGG	2 cut(s)	1552, 1974
BpiI	GAAGAC	4 cut(s)	348, 1505, 2507, 2648
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	1 cut(s)	1767
Bpu10I	CCTNAGC	2 cut(s)	165, 1239
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	2 cut(s)	1709, 2683
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	2465
BsaJI	CCNNGG	2 cut(s)	2091, 2117
BsaWI	WCCGGW	1 cut(s)	2383
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 172, 175, 455, 485, 2635, 2665
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 866, 1995
Bse1I	ACTGG	6 cut(s)	455, 824, 1145, 1547, 1969, 2585
Bse3DI	GCAATG	5 cut(s)	787, 1126, 1336, 2036, 2452
Bse8I	GATNNNNATC	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	2091, 2117
BseGI	GGATG	8 cut(s)	1060, 1315, 1409, 1588, 1794, 1802, 1888, 2159
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	418, 866, 1995
BseMI	GCAATG	5 cut(s)	787, 1126, 1336, 2036, 2452
BseMII	CTCAG	3 cut(s)	179, 678, 1230
BseNI	ACTGG	6 cut(s)	455, 824, 1145, 1547, 1969, 2585
BseRI	GAGGAG	8 cut(s)	94, 106, 147, 150, 153, 306, 309, 882
BseXI	GCAGC	6 cut(s)	381, 403, 1117, 2170, 2209, 2275
Bsh1236I	CGCG	3 cut(s)	700, 1656, 2371
BshFI	GGCC	5 cut(s)	525, 576, 1154, 2007, 2270
BsiHKAI	GWGCWC	4 cut(s)	745, 776, 925, 2107
BsiSI	CCGG	6 cut(s)	412, 484, 720, 812, 2271, 2384
BsiWI	CGTACG	1 cut(s)	1709
BslFI	GGGAC	2 cut(s)	218, 923
BslI	CCNNNNNNNGG	3 cut(s)	418, 866, 1995
BsmAI	GTCTC	5 cut(s)	475, 797, 1008, 1156, 2268
BsmBI	CGTCTC	1 cut(s)	797
BsmFI	GGGAC	2 cut(s)	218, 923
BsmI	GAATGC	2 cut(s)	1376, 1800
BsnI	GGCC	5 cut(s)	525, 576, 1154, 2007, 2270
Bsp1286I	GDGCHC	6 cut(s)	745, 776, 925, 1765, 2107, 2161
Bsp1407I	TGTACA	1 cut(s)	2133
Bsp143I	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
Bsp1720I	GCTNAGC	1 cut(s)	687
BspANI	GGCC	5 cut(s)	525, 576, 1154, 2007, 2270
BspCNI	CTCAG	3 cut(s)	178, 679, 1231
BspFNI	CGCG	3 cut(s)	700, 1656, 2371
BspHI	TCATGA	1 cut(s)	1935
BspLI	GGNNCC	2 cut(s)	577, 810
BspMAI	CTGCAG	3 cut(s)	1135, 2575, 2640
BspMI	ACCTGC	1 cut(s)	1259
BspOI	GCTAGC	1 cut(s)	1482
BspPI	GGATC	1 cut(s)	1239
BspQI	GCTCTTC	1 cut(s)	1753
BsrDI	GCAATG	5 cut(s)	787, 1126, 1336, 2036, 2452
BsrGI	TGTACA	1 cut(s)	2133
BsrI	ACTGG	6 cut(s)	455, 824, 1145, 1547, 1969, 2585
BssECI	CCNNGG	2 cut(s)	2091, 2117
BssMI	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
BssNAI	GTATAC	1 cut(s)	979
BssNI	GRCGYC	1 cut(s)	2465
BssSI	CACGAG	1 cut(s)	924
BssT1I	CCWWGG	2 cut(s)	2091, 2117
Bst1107I	GTATAC	1 cut(s)	979
Bst2BI	CACGAG	1 cut(s)	924
Bst4CI	ACNGT	8 cut(s)	649, 1088, 1669, 1810, 2472, 2488, 2557, 2702
Bst6I	CTCTTC	4 cut(s)	280, 1753, 2158, 2298
BstACI	GRCGYC	1 cut(s)	2465
BstAUI	TGTACA	1 cut(s)	2133
BstBAI	YACGTR	2 cut(s)	1709, 2683
BstC8I	GCNNGC	5 cut(s)	308, 825, 1480, 2062, 2373
BstDEI	CTNAG	6 cut(s)	165, 687, 750, 1239, 1443, 2143
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	8 cut(s)	1060, 1315, 1409, 1588, 1794, 1802, 1888, 2159
BstFNI	CGCG	3 cut(s)	700, 1656, 2371
BstHHI	GCGC	3 cut(s)	792, 1658, 2371
BstKTI	GATC	5 cut(s)	519, 1138, 1234, 1413, 1518
BstMAI	GTCTC	5 cut(s)	475, 797, 1008, 1156, 2268
BstMBI	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
BstMWI	GCNNNNNNNGC	7 cut(s)	531, 602, 697, 1130, 1662, 2061, 2489
BstNSI	RCATGY	4 cut(s)	916, 977, 2052, 2281
BstSFI	CTRYAG	3 cut(s)	1131, 2571, 2636
BstUI	CGCG	3 cut(s)	700, 1656, 2371
BstV1I	GCAGC	6 cut(s)	381, 403, 1117, 2170, 2209, 2275
BstV2I	GAAGAC	4 cut(s)	348, 1505, 2507, 2648
BstZ17I	GTATAC	1 cut(s)	979
BsuRI	GGCC	5 cut(s)	525, 576, 1154, 2007, 2270
BtrI	CACGTC	1 cut(s)	2244
BtsCI	GGATG	8 cut(s)	1060, 1315, 1409, 1588, 1794, 1802, 1888, 2159
BtsIMutI	CAGTG	5 cut(s)	18, 1138, 2468, 2578, 2707
BveI	ACCTGC	1 cut(s)	1259
Cac8I	GCNNGC	5 cut(s)	308, 825, 1480, 2062, 2373
CciI	TCATGA	1 cut(s)	1935
CfoI	GCGC	3 cut(s)	792, 1658, 2371
Cfr13I	GGNCC	3 cut(s)	494, 523, 575
CpoI	CGGWCCG	1 cut(s)	494
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	8 cut(s)	367, 736, 1250, 1504, 1710, 2134, 2449, 2680
CspI	CGGWCCG	1 cut(s)	494
CviQI	GTAC	8 cut(s)	367, 736, 1250, 1504, 1710, 2134, 2449, 2680
DdeI	CTNAG	6 cut(s)	165, 687, 750, 1239, 1443, 2143
DpnI	GATC	5 cut(s)	518, 1137, 1233, 1412, 1517
DpnII	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
DraI	TTTAAA	1 cut(s)	1176
Eam1104I	CTCTTC	4 cut(s)	280, 1753, 2158, 2298
EarI	CTCTTC	4 cut(s)	280, 1753, 2158, 2298
Ecl136II	GAGCTC	2 cut(s)	743, 774
Eco130I	CCWWGG	2 cut(s)	2091, 2117
Eco24I	GRGCYC	4 cut(s)	745, 776, 1765, 2161
Eco32I	GATATC	1 cut(s)	2230
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	2 cut(s)	743, 774
Eco57I	CTGAAG	3 cut(s)	1385, 2063, 2514
EcoICRI	GAGCTC	2 cut(s)	743, 774
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoRV	GATATC	1 cut(s)	2230
EcoT14I	CCWWGG	2 cut(s)	2091, 2117
EcoT22I	ATGCAT	4 cut(s)	918, 1555, 1802, 1951
EcoT38I	GRGCYC	4 cut(s)	745, 776, 1765, 2161
ErhI	CCWWGG	2 cut(s)	2091, 2117
Esp3I	CGTCTC	1 cut(s)	797
FaqI	GGGAC	2 cut(s)	218, 923
FauNDI	CATATG	1 cut(s)	2029
FbaI	TGATCA	3 cut(s)	516, 1410, 1515
FblI	GTMKAC	2 cut(s)	978, 2697
FokI	GGATG	8 cut(s)	1067, 1322, 1416, 1595, 1801, 1809, 1895, 2166
FriOI	GRGCYC	4 cut(s)	745, 776, 1765, 2161
FspBI	CTAG	8 cut(s)	864, 900, 1479, 1766, 1829, 2009, 2724, 2757
FspI	TGCGCA	1 cut(s)	791
GlaI	GCGC	3 cut(s)	791, 1657, 2370
GsuI	CTGGAG	1 cut(s)	1767
HaeIII	GGCC	5 cut(s)	525, 576, 1154, 2007, 2270
HapII	CCGG	6 cut(s)	412, 484, 720, 812, 2271, 2384
HgaI	GACGC	1 cut(s)	706
HhaI	GCGC	3 cut(s)	792, 1658, 2371
Hin1I	GRCGYC	1 cut(s)	2465
Hin6I	GCGC	3 cut(s)	790, 1656, 2369
HinP1I	GCGC	3 cut(s)	790, 1656, 2369
HincII	GTYRAC	1 cut(s)	2716
HindII	GTYRAC	1 cut(s)	2716
HindIII	AAGCTT	3 cut(s)	96, 1971, 2496
HinfI	GANTC	9 cut(s)	263, 511, 558, 716, 991, 1524, 1651, 2543, 2630
HpaII	CCGG	6 cut(s)	412, 484, 720, 812, 2271, 2384
HphI	GGTGA	9 cut(s)	142, 274, 292, 1090, 1970, 2080, 2180, 2630, 2744
Hpy166II	GTNNAC	7 cut(s)	18, 979, 2134, 2449, 2578, 2698, 2716
Hpy188I	TCNGA	9 cut(s)	475, 494, 516, 557, 645, 837, 882, 1410, 2692
Hpy188III	TCNNGA	8 cut(s)	208, 457, 864, 926, 1528, 1936, 2547, 2654
Hpy8I	GTNNAC	7 cut(s)	18, 979, 2134, 2449, 2578, 2698, 2716
Hpy99I	CGWCG	3 cut(s)	138, 350, 2696
HpyCH4III	ACNGT	8 cut(s)	649, 1088, 1669, 1810, 2472, 2488, 2557, 2702
HpyCH4IV	ACGT	8 cut(s)	1502, 1708, 1712, 2243, 2465, 2682, 2694, 2772
HpyF10VI	GCNNNNNNNGC	7 cut(s)	531, 602, 697, 1130, 1662, 2061, 2489
HpyF3I	CTNAG	6 cut(s)	165, 687, 750, 1239, 1443, 2143
HpySE526I	ACGT	8 cut(s)	1502, 1708, 1712, 2243, 2465, 2682, 2694, 2772
Hsp92I	GRCGYC	1 cut(s)	2465
HspAI	GCGC	3 cut(s)	790, 1656, 2369
Ksp22I	TGATCA	3 cut(s)	516, 1410, 1515
Kzo9I	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
LguI	GCTCTTC	1 cut(s)	1753
LmnI	GCTCC	2 cut(s)	808, 1285
Lsp1109I	GCAGC	6 cut(s)	381, 403, 1117, 2170, 2209, 2275
LweI	GCATC	7 cut(s)	925, 1267, 1773, 1787, 1958, 2184, 2390
MaeI	CTAG	8 cut(s)	864, 900, 1479, 1766, 1829, 2009, 2724, 2757
MaeII	ACGT	8 cut(s)	1502, 1708, 1712, 2243, 2465, 2682, 2694, 2772
MaeIII	GTNAC	5 cut(s)	1078, 1313, 1643, 2086, 2466
MalI	GATC	5 cut(s)	518, 1137, 1233, 1412, 1517
MboI	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
MfeI	CAATTG	1 cut(s)	2298
MhlI	GDGCHC	6 cut(s)	745, 776, 925, 1765, 2107, 2161
MluCI	AATT	8 cut(s)	88, 439, 488, 1902, 1991, 2112, 2298, 2601
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	4 cut(s)	636, 1411, 1829, 2715
Mph1103I	ATGCAT	4 cut(s)	918, 1555, 1802, 1951
MroXI	GAANNNNTTC	4 cut(s)	1438, 1973, 2217, 2645
MseI	TTAA	6 cut(s)	651, 852, 1146, 1175, 1535, 2337
MslI	CAYNNNNRTG	4 cut(s)	999, 1067, 1304, 2129
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	6 cut(s)	412, 484, 720, 812, 2271, 2384
MunI	CAATTG	1 cut(s)	2298
Mva1269I	GAATGC	2 cut(s)	1376, 1800
MvnI	CGCG	3 cut(s)	700, 1656, 2371
MwoI	GCNNNNNNNGC	7 cut(s)	531, 602, 697, 1130, 1662, 2061, 2489
NdeI	CATATG	1 cut(s)	2029
NdeII	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
NheI	GCTAGC	1 cut(s)	1478
NlaIV	GGNNCC	2 cut(s)	577, 810
NmuCI	GTSAC	3 cut(s)	1078, 2086, 2466
NsbI	TGCGCA	1 cut(s)	791
NsiI	ATGCAT	4 cut(s)	918, 1555, 1802, 1951
NspI	RCATGY	4 cut(s)	916, 977, 2052, 2281
OliI	CACNNNNGTG	1 cut(s)	2129
PagI	TCATGA	1 cut(s)	1935
PciI	ACATGT	1 cut(s)	973
PciSI	GCTCTTC	1 cut(s)	1753
PcsI	WCGNNNNNNNCGW	4 cut(s)	471, 534, 1718, 2688
PctI	GAATGC	2 cut(s)	1376, 1800
PdmI	GAANNNNTTC	4 cut(s)	1438, 1973, 2217, 2645
PfeI	GAWTC	8 cut(s)	263, 511, 558, 991, 1524, 1651, 2543, 2630
Pfl23II	CGTACG	1 cut(s)	1709
PflFI	GACNNNGTC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	710
Ppu21I	YACGTR	2 cut(s)	1709, 2683
PscI	ACATGT	1 cut(s)	973
PsiI	TTATAA	1 cut(s)	1622
Psp124BI	GAGCTC	2 cut(s)	745, 776
Psp1406I	AACGTT	1 cut(s)	2772
PspLI	CGTACG	1 cut(s)	1709
PspN4I	GGNNCC	2 cut(s)	577, 810
PspPI	GGNCC	3 cut(s)	494, 523, 575
PstI	CTGCAG	3 cut(s)	1135, 2575, 2640
PsyI	GACNNNGTC	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	8 cut(s)	368, 737, 1251, 1505, 1711, 2135, 2450, 2681
RsaNI	GTAC	8 cut(s)	367, 736, 1250, 1504, 1710, 2134, 2449, 2680
RseI	CAYNNNNRTG	4 cut(s)	999, 1067, 1304, 2129
Rsr2I	CGGWCCG	1 cut(s)	494
RsrII	CGGWCCG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	745, 776
SapI	GCTCTTC	1 cut(s)	1753
SaqAI	TTAA	6 cut(s)	651, 852, 1146, 1175, 1535, 2337
Sau3AI	GATC	5 cut(s)	516, 1135, 1231, 1410, 1515
Sau96I	GGNCC	3 cut(s)	494, 523, 575
SchI	GAGTC	1 cut(s)	710
SduI	GDGCHC	6 cut(s)	745, 776, 925, 1765, 2107, 2161
SfaNI	GCATC	7 cut(s)	925, 1267, 1773, 1787, 1958, 2184, 2390
SfcI	CTRYAG	3 cut(s)	1131, 2571, 2636
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	4 cut(s)	999, 1067, 1304, 2129
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	2723
Sse9I	AATT	8 cut(s)	88, 439, 488, 1902, 1991, 2112, 2298, 2601
SspI	AATATT	2 cut(s)	1198, 1878
SspMI	CTAG	8 cut(s)	864, 900, 1479, 1766, 1829, 2009, 2724, 2757
SstI	GAGCTC	2 cut(s)	745, 776
StyI	CCWWGG	2 cut(s)	2091, 2117
TaaI	ACNGT	8 cut(s)	649, 1088, 1669, 1810, 2472, 2488, 2557, 2702
TaiI	ACGT	8 cut(s)	1505, 1711, 1715, 2246, 2468, 2685, 2697, 2775
TaqI	TCGA	6 cut(s)	405, 1234, 1287, 1977, 2161, 2585
TaqII	GACCGA	3 cut(s)	511, 735, 2798
TasI	AATT	8 cut(s)	88, 439, 488, 1902, 1991, 2112, 2298, 2601
TatI	WGTACW	2 cut(s)	366, 2133
TauI	GCSGC	4 cut(s)	576, 726, 1377, 1855
TfiI	GAWTC	8 cut(s)	263, 511, 558, 991, 1524, 1651, 2543, 2630
Tru1I	TTAA	6 cut(s)	651, 852, 1146, 1175, 1535, 2337
Tru9I	TTAA	6 cut(s)	651, 852, 1146, 1175, 1535, 2337
TscAI	CASTG	5 cut(s)	18, 1145, 2475, 2585, 2707
TseFI	GTSAC	3 cut(s)	1078, 2086, 2466
TseI	GCWGC	6 cut(s)	391, 394, 1130, 2183, 2197, 2288
Tsp45I	GTSAC	3 cut(s)	1078, 2086, 2466
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	5 cut(s)	18, 1145, 2475, 2585, 2707
Tth111I	GACNNNGTC	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	3 cut(s)	88, 439, 2112
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	4 cut(s)	916, 977, 2052, 2281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmiI	GTMKAC	2 cut(s)	978, 2697
XmnI	GAANNNNTTC	4 cut(s)	1438, 1973, 2217, 2645
XspI	CTAG	8 cut(s)	864, 900, 1479, 1766, 1829, 2009, 2724, 2757
ZraI	GACGTC	1 cut(s)	2466
Zsp2I	ATGCAT	4 cut(s)	918, 1555, 1802, 1951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.