Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005322.1

Orthogroup ID

OG0010554

Physical Location & Seq

Genomic Coordinates Reverse (-)

132662 .. 134855

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005322.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgtacgccagagaagaactgcctggagaaggggttgaagtgattgcggctgatgctccgtcggagtaccagatggctcctagggcggtggagcacaaggacaaggcggctgctggttcaggagaggggacgggtgagccaaagaagagagggagagggaggcctccacagaagaatgtgggggaagggcagtcctcctcagccaaggggagaaaggagaagggccaaggaagcggcggtgggggtggaggaggtggaagtggaggtgccggtggcagtggcagtgggggcggaggaggaggaggaggaggtggtgggggcgggggcggcggccagggcaatcccggtgcagcttataatggaagaagcttcactccccacctcatctctgtcaatgctggggagaatgtctgcgggagcgttatgagatatttccatgaaagaccacgagcaatctgcgtgatttctgcaagcggagtaatctctagtgttaatctgcgccaacaggatgacgaggccatcacatatgagggacgtttcgaaatcctgagcttgtctggatgccttatgccccataacggggcctggcgtggtgcaatgagtgtctctctggcaggcgccaacggtgcaattttagggggaggcattaatggaattctgagagctgctactcctgtgcaagttgtggtaggtagtttcctagctggtgatccgaaaggaaagggtaagaagaagggggatgctgaaccacctgatactgagcctccacctccgccaccgccgtcgcctccaccgccagcaccagaaccgccacctgcaccaggaccaccaccaccaccaccaccaccaccacaagagcccatgggattctgggggatatacgataatagctggccgagaatggaatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901363 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

303

Amino Acids

30.17

Weight (kDa)

6.92

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060
malus_domestica	MD03G1133200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0391351
rosa_laevigata	RLG00000009870
rosa_multiflora	Rmu_sc0005322.1_g000032 Rmu_sc0028307.1_g000001 Rmu_sc0033364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304640 Rroxscaffold_5G00337090
rosa_rugosa	Rorug03G0335600
rosa_samantha	Rh1BG196400 Rh1DG224400 Rh4AG036700 Rh4BG031400 Rh4CG040000 Rh4DG034300
rosa_wichuraiana	Rw4G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AccB1I	GGYRCC	2 cut(s)	266, 617
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	2 cut(s)	331, 893
AcsI	RAATTY	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	2 cut(s)	5, 68
AfiI	CCNNNNNNNGG	5 cut(s)	29, 578, 579, 580, 821
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	4 cut(s)	22, 333, 584, 820
AluBI	AGCT	6 cut(s)	353, 369, 552, 665, 704, 891
AluI	AGCT	6 cut(s)	353, 369, 552, 665, 704, 891
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	6 cut(s)	161, 223, 331, 516, 582, 893
ApeKI	GCWGC	3 cut(s)	110, 350, 665
ApoI	RAATTY	1 cut(s)	654
AseI	ATTAAT	1 cut(s)	648
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	501, 620
AspS9I	GGNCC	3 cut(s)	223, 582, 824
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	146, 719
AsuII	TTCGAA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	824
AvrII	CCTAGG	1 cut(s)	80
BanI	GGYRCC	2 cut(s)	266, 617
BanII	GRGCYC	1 cut(s)	861
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	97, 362, 652
BccI	CCATC	2 cut(s)	67, 527
BceAI	ACGGC	1 cut(s)	766
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	4 cut(s)	24, 335, 586, 822
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	3 cut(s)	81, 486, 701
BfoI	RGCGCY	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	823
BisI	GCNGC	8 cut(s)	48, 108, 111, 235, 328, 331, 351, 666
BlnI	CCTAGG	1 cut(s)	80
BlsI	GCNGC	8 cut(s)	49, 109, 112, 236, 329, 332, 352, 667
Bme1390I	CCNGG	5 cut(s)	24, 335, 345, 586, 822
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	3 cut(s)	223, 582, 824
BmiI	GGNNCC	4 cut(s)	78, 268, 583, 619
BmrFI	CCNGG	5 cut(s)	24, 335, 345, 586, 822
BmsI	GCATC	3 cut(s)	43, 551, 730
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	199, 548
Bpu14I	TTCGAA	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	5 cut(s)	80, 204, 226, 334, 861
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 748, 778
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 578, 579, 580, 821
Bse118I	RCCGGY	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	4 cut(s)	24, 335, 586, 822
BseDI	CCNNGG	5 cut(s)	80, 204, 226, 334, 861
BseGI	GGATG	3 cut(s)	514, 566, 745
BseLI	CCNNNNNNNGG	5 cut(s)	29, 578, 579, 580, 821
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	4 cut(s)	213, 539, 650, 750
BseRI	GAGGAG	7 cut(s)	187, 264, 309, 312, 315, 318, 321
BseXI	GCAGC	3 cut(s)	97, 362, 652
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	2 cut(s)	369, 801
BshFI	GGCC	6 cut(s)	163, 225, 333, 518, 584, 895
BshNI	GGYRCC	2 cut(s)	266, 617
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	270, 345
BslFI	GGGAC	2 cut(s)	142, 546
BslI	CCNNNNNNNGG	5 cut(s)	29, 578, 579, 580, 821
BsmAI	GTCTC	1 cut(s)	610
BsmFI	GGGAC	2 cut(s)	142, 546
BsnI	GGCC	6 cut(s)	163, 225, 333, 518, 584, 895
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	96, 861
Bsp143I	GATC	1 cut(s)	709
Bsp19I	CCATGG	1 cut(s)	861
BspANI	GGCC	6 cut(s)	163, 225, 333, 518, 584, 895
BspCNI	CTCAG	4 cut(s)	212, 540, 651, 751
BspLI	GGNNCC	4 cut(s)	78, 268, 583, 619
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	1 cut(s)	704
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	2 cut(s)	266, 617
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	5 cut(s)	80, 204, 226, 334, 861
BssMI	GATC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	618
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	4 cut(s)	80, 204, 226, 861
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	4 cut(s)	24, 335, 586, 822
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	618
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	4 cut(s)	472, 616, 798, 893
BstDEI	CTNAG	4 cut(s)	199, 548, 659, 759
BstDSI	CCRYGG	1 cut(s)	861
BstENI	CCTNNNNNAGG	2 cut(s)	27, 819
BstF5I	GGATG	3 cut(s)	514, 566, 745
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	2 cut(s)	501, 620
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 83, 231, 288, 327, 336, 626, 793
BstNI	CCWGG	4 cut(s)	24, 335, 586, 822
BstSCI	CCNGG	5 cut(s)	22, 333, 343, 584, 820
BstV1I	GCAGC	3 cut(s)	97, 362, 652
BsuRI	GGCC	6 cut(s)	163, 225, 333, 518, 584, 895
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	514, 566, 745
BtsI	GCAGTG	2 cut(s)	283, 289
BtsIMutI	CAGTG	2 cut(s)	283, 289
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	4 cut(s)	472, 616, 798, 893
CfoI	GCGC	2 cut(s)	501, 620
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	223, 582, 824
Csp6I	GTAC	2 cut(s)	4, 67
CviAII	CATG	2 cut(s)	437, 862
CviQI	GTAC	2 cut(s)	4, 67
DdeI	CTNAG	4 cut(s)	199, 548, 659, 759
DinI	GGCGCC	1 cut(s)	619
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
EaeI	YGGCCR	2 cut(s)	331, 893
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	306, 762
Eco130I	CCWWGG	4 cut(s)	80, 204, 226, 861
Eco147I	AGGCCT	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	824
EcoNI	CCTNNNNNAGG	2 cut(s)	27, 819
EcoO109I	RGGNCCY	1 cut(s)	582
EcoRI	GAATTC	1 cut(s)	654
EcoRII	CCWGG	4 cut(s)	22, 333, 584, 820
EcoT14I	CCWWGG	4 cut(s)	80, 204, 226, 861
EcoT38I	GRGCYC	1 cut(s)	861
EgeI	GGCGCC	1 cut(s)	619
EheI	GGCGCC	1 cut(s)	619
ErhI	CCWWGG	4 cut(s)	80, 204, 226, 861
FaeI	CATG	2 cut(s)	440, 865
FaiI	YATR	9 cut(s)	357, 425, 438, 526, 528, 569, 576, 863, 880
FaqI	GGGAC	2 cut(s)	142, 546
FatI	CATG	2 cut(s)	436, 861
FauI	CCCGC	2 cut(s)	314, 407
FauNDI	CATATG	1 cut(s)	526
Fnu4HI	GCNGC	8 cut(s)	48, 108, 111, 235, 328, 331, 351, 666
FokI	GGATG	3 cut(s)	521, 573, 752
FriOI	GRGCYC	1 cut(s)	861
Fsp4HI	GCNGC	8 cut(s)	48, 108, 111, 235, 328, 331, 351, 666
FspBI	CTAG	3 cut(s)	81, 486, 701
GlaI	GCGC	2 cut(s)	500, 619
GluI	GCNGC	8 cut(s)	48, 108, 111, 235, 328, 331, 351, 666
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	6 cut(s)	163, 225, 333, 518, 584, 895
HapII	CCGG	2 cut(s)	270, 345
HhaI	GCGC	2 cut(s)	501, 620
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	2 cut(s)	440, 865
Hin6I	GCGC	2 cut(s)	499, 618
HinP1I	GCGC	2 cut(s)	499, 618
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	1 cut(s)	867
HpaII	CCGG	2 cut(s)	270, 345
HphI	GGTGA	2 cut(s)	146, 719
Hpy188I	TCNGA	3 cut(s)	64, 660, 714
Hpy188III	TCNNGA	3 cut(s)	120, 547, 558
Hpy99I	CGWCG	2 cut(s)	64, 787
HpyAV	CCTTC	4 cut(s)	23, 179, 214, 727
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	6 cut(s)	350, 470, 596, 629, 679, 818
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 83, 231, 288, 327, 336, 626, 793
HpyF3I	CTNAG	4 cut(s)	199, 548, 659, 759
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	2 cut(s)	440, 865
HspAI	GCGC	2 cut(s)	499, 618
KasI	GGCGCC	1 cut(s)	617
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	4 cut(s)	61, 82, 91, 417
Lsp1109I	GCAGC	3 cut(s)	97, 362, 652
LweI	GCATC	3 cut(s)	43, 551, 730
MaeI	CTAG	3 cut(s)	81, 486, 701
MaeII	ACGT	1 cut(s)	535
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	5 cut(s)	26, 157, 184, 375, 742
MhlI	GDGCHC	2 cut(s)	96, 861
MluCI	AATT	2 cut(s)	630, 654
Mly113I	GGCGCC	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	2 cut(s)	492, 648
MspI	CCGG	2 cut(s)	270, 345
MspR9I	CCNGG	5 cut(s)	24, 335, 345, 586, 822
MvaI	CCWGG	4 cut(s)	24, 335, 586, 822
MwoI	GCNNNNNNNGC	8 cut(s)	53, 83, 231, 288, 327, 336, 626, 793
NarI	GGCGCC	1 cut(s)	618
NciI	CCSGG	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	2 cut(s)	440, 865
NlaIV	GGNNCC	4 cut(s)	78, 268, 583, 619
NspV	TTCGAA	1 cut(s)	540
PaqCI	CACCTGC	1 cut(s)	823
PceI	AGGCCT	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	867
PkrI	GCNGC	8 cut(s)	49, 109, 112, 236, 329, 332, 352, 667
PluTI	GGCGCC	1 cut(s)	621
PshBI	ATTAAT	1 cut(s)	648
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	4 cut(s)	22, 333, 584, 820
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	4 cut(s)	22, 333, 584, 820
PspN4I	GGNNCC	4 cut(s)	78, 268, 583, 619
PspPI	GGNCC	3 cut(s)	223, 582, 824
RsaI	GTAC	2 cut(s)	5, 68
RsaNI	GTAC	2 cut(s)	4, 67
SaqAI	TTAA	2 cut(s)	492, 648
SatI	GCNGC	8 cut(s)	48, 108, 111, 235, 328, 331, 351, 666
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	3 cut(s)	223, 582, 824
ScrFI	CCNGG	5 cut(s)	24, 335, 345, 586, 822
SduI	GDGCHC	2 cut(s)	96, 861
SfaNI	GCATC	3 cut(s)	43, 551, 730
SfoI	GGCGCC	1 cut(s)	619
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	824
Sse9I	AATT	2 cut(s)	630, 654
SseBI	AGGCCT	1 cut(s)	163
SspDI	GGCGCC	1 cut(s)	617
SspMI	CTAG	3 cut(s)	81, 486, 701
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	5 cut(s)	22, 333, 343, 584, 820
StyI	CCWWGG	4 cut(s)	80, 204, 226, 861
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	1 cut(s)	540
TasI	AATT	2 cut(s)	630, 654
TauI	GCSGC	5 cut(s)	50, 110, 237, 330, 333
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	2 cut(s)	492, 648
Tru9I	TTAA	2 cut(s)	492, 648
TscAI	CASTG	2 cut(s)	283, 289
TseI	GCWGC	3 cut(s)	110, 350, 665
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	283, 289
VpaK11BI	GGWCC	1 cut(s)	824
VspI	ATTAAT	1 cut(s)	648
XagI	CCTNNNNNAGG	2 cut(s)	27, 819
XapI	RAATTY	1 cut(s)	654
XmaJI	CCTAGG	1 cut(s)	80
XspI	CTAG	3 cut(s)	81, 486, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.