Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010554

Physical Location & Seq

Genomic Coordinates Reverse (-)

7956529 .. 7962902

Gene Structure 6374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGACAACCTCACAAAAGTCATAATCTCCTTCTTTATACTGGAATTCGCAAGAACTCTCGATCTTCACATAATTTTTCCCTTCATGTTCAAGCATCAGTAGTCCTACTGGCTACTGAAGGCAATCCCGGTGCAGCTTATAATGGAAGAAGCTTCACGCCCCACCTCATCTCTGTCAATGCTGGGGAGAATGTCTGCGGGAGCGTTATGAGATATTTCCATGAAAGACCACGAGCAATCTGCGTGATTTCTGCAAGTGGAGTAATCTCTAGTGTTAATCTGCGCCAACAGGATGACGAGGCCATCACATATGAGGGACGTTTCGAAATCCTGAGCTTGTCTGGATGCCTTATGCCCCATAACGGGGCCTGGCGTGGTGCAATGAGTGTCTCTCTGGCAGGCGCCAACGGTGCAATTTTAGGGGGAGGCATTAATGGAATTCTGAGAGCTGCTACTCCTGTGCAAGTTGTGGTAGGTAGTTTCCTAGCTGGTGATCCGAAAGGAAAGGGTAAGAAGAAGGGGGATGCTGAACCACCTGATACTGAGCCTCCACCTCCGCCTCCCCCTCCGCCACCGCCGTCGCCTCCACCGCCAGCACCAGAACCGCCACCTGCACCAGGACCTCCACCACCACCACCACAACCACCACCACCACCACAAGAGCCCATGGGATTCTGGGGGATATACGATAATAGCTGGCCGAGAATGGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901363 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

238

Amino Acids

25.2

Weight (kDa)

8.48

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	54 - 161	1.2e-21	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060
malus_domestica	MD03G1133200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0391351
rosa_laevigata	RLG00000009870
rosa_multiflora	Rmu_sc0005322.1_g000032 Rmu_sc0028307.1_g000001 Rmu_sc0033364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304640 Rroxscaffold_5G00337090
rosa_rugosa	Rorug03G0335600
rosa_samantha	Rh1BG196400 Rh1DG224400 Rh4AG036700 Rh4BG031400 Rh4CG040000 Rh4DG034300
rosa_wichuraiana	Rw4G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	6 cut(s)	198, 557, 569, 575, 590, 605
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	698
AcsI	RAATTY	2 cut(s)	45, 438
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	402
AfiI	CCNNNNNNNGG	4 cut(s)	362, 363, 364, 617
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	368, 616
AluBI	AGCT	6 cut(s)	137, 153, 336, 449, 488, 696
AluI	AGCT	6 cut(s)	137, 153, 336, 449, 488, 696
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	3 cut(s)	300, 366, 698
ApeKI	GCWGC	2 cut(s)	134, 449
ApoI	RAATTY	2 cut(s)	45, 438
AseI	ATTAAT	1 cut(s)	432
AspLEI	GCGC	2 cut(s)	285, 404
AspS9I	GGNCC	2 cut(s)	366, 620
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	503
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	666
BauI	CACGAG	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	146, 436
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	562
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BciT130I	CCWGG	2 cut(s)	370, 618
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	270, 485
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	2 cut(s)	135, 450
BlsI	GCNGC	2 cut(s)	136, 451
Bme1390I	CCNGG	3 cut(s)	129, 370, 618
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	366, 620
BmiI	GGNNCC	2 cut(s)	367, 403
BmrFI	CCNGG	3 cut(s)	129, 370, 618
BmsI	GCATC	3 cut(s)	104, 335, 514
BplI	GAGNNNNNCTC	3 cut(s)	27, 376, 408
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 363, 364, 617
Bse1I	ACTGG	2 cut(s)	46, 114
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	370, 618
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	3 cut(s)	298, 350, 529
BseLI	CCNNNNNNNGG	4 cut(s)	362, 363, 364, 617
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	323, 434, 534
BseNI	ACTGG	2 cut(s)	46, 114
BseXI	GCAGC	2 cut(s)	146, 436
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	2 cut(s)	153, 597
BshFI	GGCC	3 cut(s)	302, 368, 700
BshNI	GGYRCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	4 cut(s)	362, 363, 364, 617
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	302, 368, 700
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	2 cut(s)	62, 493
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	6 cut(s)	198, 557, 569, 575, 590, 605
BspANI	GGCC	3 cut(s)	302, 368, 700
BspCNI	CTCAG	3 cut(s)	324, 435, 535
BspLI	GGNNCC	2 cut(s)	367, 403
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	488
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	46, 114
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	2 cut(s)	62, 493
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	370, 618
Bst4CI	ACNGT	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	400, 594, 698
BstDEI	CTNAG	3 cut(s)	332, 443, 543
BstDSI	CCRYGG	1 cut(s)	666
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	3 cut(s)	298, 350, 529
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	285, 404
BstKTI	GATC	2 cut(s)	65, 496
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	62, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 589
BstNI	CCWGG	2 cut(s)	370, 618
BstSCI	CCNGG	3 cut(s)	127, 368, 616
BstV1I	GCAGC	2 cut(s)	146, 436
BsuRI	GGCC	3 cut(s)	302, 368, 700
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	298, 350, 529
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	3 cut(s)	400, 594, 698
CfoI	GCGC	2 cut(s)	285, 404
Cfr13I	GGNCC	2 cut(s)	366, 620
CviAII	CATG	3 cut(s)	86, 221, 667
DdeI	CTNAG	3 cut(s)	332, 443, 543
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	2 cut(s)	64, 495
DpnII	GATC	2 cut(s)	62, 493
EaeI	YGGCCR	1 cut(s)	698
EciI	GGCGGA	2 cut(s)	546, 558
Eco130I	CCWWGG	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoO109I	RGGNCCY	2 cut(s)	366, 620
EcoRI	GAATTC	2 cut(s)	45, 438
EcoRII	CCWGG	2 cut(s)	368, 616
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	666
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	3 cut(s)	89, 224, 670
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	85, 220, 666
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	135, 450
FokI	GGATG	3 cut(s)	305, 357, 536
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	2 cut(s)	135, 450
FspBI	CTAG	2 cut(s)	270, 485
GlaI	GCGC	2 cut(s)	284, 403
GluI	GCNGC	2 cut(s)	135, 450
GsaI	CCCAGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	302, 368, 700
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	2 cut(s)	285, 404
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	3 cut(s)	89, 224, 670
Hin6I	GCGC	2 cut(s)	283, 402
HinP1I	GCGC	2 cut(s)	283, 402
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	1 cut(s)	672
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	2 cut(s)	444, 498
Hpy188III	TCNNGA	3 cut(s)	60, 331, 342
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	4 cut(s)	41, 92, 113, 511
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	6 cut(s)	134, 254, 380, 413, 463, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 589
HpyF3I	CTNAG	3 cut(s)	332, 443, 543
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	89, 224, 670
HspAI	GCGC	2 cut(s)	283, 402
KasI	GGCGCC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	62, 493
LmnI	GCTCC	1 cut(s)	201
Lsp1109I	GCAGC	2 cut(s)	146, 436
LweI	GCATC	3 cut(s)	104, 335, 514
MaeI	CTAG	2 cut(s)	270, 485
MaeII	ACGT	1 cut(s)	319
MalI	GATC	2 cut(s)	64, 495
MboI	GATC	2 cut(s)	62, 493
MboII	GAAGA	3 cut(s)	57, 159, 526
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	4 cut(s)	45, 73, 414, 438
Mly113I	GGCGCC	1 cut(s)	402
MseI	TTAA	2 cut(s)	276, 432
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	129, 370, 618
MvaI	CCWGG	2 cut(s)	370, 618
MwoI	GCNNNNNNNGC	2 cut(s)	410, 589
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	666
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	62, 493
NlaIII	CATG	3 cut(s)	89, 224, 670
NlaIV	GGNNCC	2 cut(s)	367, 403
NspV	TTCGAA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	136, 451
PluTI	GGCGCC	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	620
PshBI	ATTAAT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	368, 616
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	368, 616
PspN4I	GGNNCC	2 cut(s)	367, 403
PspPI	GGNCC	2 cut(s)	366, 620
PspPPI	RGGWCCY	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	276, 432
SatI	GCNGC	2 cut(s)	135, 450
Sau3AI	GATC	2 cut(s)	62, 493
Sau96I	GGNCC	2 cut(s)	366, 620
ScrFI	CCNGG	3 cut(s)	129, 370, 618
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	3 cut(s)	104, 335, 514
SfoI	GGCGCC	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	620
Sse9I	AATT	4 cut(s)	45, 73, 414, 438
SsiI	CCGC	6 cut(s)	198, 557, 569, 575, 590, 605
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	2 cut(s)	270, 485
StyD4I	CCNGG	3 cut(s)	127, 368, 616
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	61, 324
TasI	AATT	4 cut(s)	45, 73, 414, 438
TfiI	GAWTC	1 cut(s)	672
Tru1I	TTAA	2 cut(s)	276, 432
Tru9I	TTAA	2 cut(s)	276, 432
TseI	GCWGC	2 cut(s)	134, 449
TspDTI	ATGAA	2 cut(s)	74, 237
VpaK11BI	GGWCC	1 cut(s)	620
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	2 cut(s)	45, 438
XspI	CTAG	2 cut(s)	270, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.