Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010554

Physical Location & Seq

Genomic Coordinates Reverse (-)

39433577 .. 39433816

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTTGAACGATCACGGATATGTAATTATGAAATTATATATCGATTTTTATTTGTGTTAAAAATCAGGGGCTTGACACCAGAAGACATTATAGCCGTGAAGTTTGTAACTGTTGAGGCAGCAGAGACTTTTTACTATGCTTATGTGAAAGCAATGGGTTTTGATGTTAGAAAGGGTGACAAGAGAACAAGTACAAGGACTGGGAGAGTCACTATCCTCAAATGGGTTTGTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901363 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

79

Amino Acids

9.21

Weight (kDa)

9.64

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060
malus_domestica	MD03G1133200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0391351
rosa_laevigata	RLG00000009870
rosa_multiflora	Rmu_sc0005322.1_g000032 Rmu_sc0028307.1_g000001 Rmu_sc0033364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304640 Rroxscaffold_5G00337090
rosa_rugosa	Rorug03G0335600
rosa_samantha	Rh1BG196400 Rh1DG224400 Rh4AG036700 Rh4BG031400 Rh4CG040000 Rh4DG034300
rosa_wichuraiana	Rw4G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	90
Bsa29I	ATCGAT	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	11
BspDI	ATCGAT	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	112
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	43
BsuTUI	ATCGAT	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	192
CviJI	RGCY	2 cut(s)	72, 95
CviKI_1	RGCY	2 cut(s)	72, 95
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
FaiI	YATR	8 cut(s)	22, 30, 38, 40, 92, 138, 144, 238
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	207
HphI	GGTGA	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	11
LpnPI	CCDG	3 cut(s)	52, 93, 186
Lsp1109I	GCAGC	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	106, 176, 208
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	2 cut(s)	25, 33
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	109, 227
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	19
NdeII	GATC	1 cut(s)	11
NmuCI	GTSAC	2 cut(s)	176, 208
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	216
SgeI	CNNG	9 cut(s)	27, 79, 85, 92, 109, 193, 201, 207, 213
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	2 cut(s)	25, 33
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	25, 33
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseFI	GTSAC	2 cut(s)	176, 208
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	176, 208
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.