Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010554

Physical Location & Seq

Genomic Coordinates Forward (+)

25277263 .. 25284084

Gene Structure 6822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAGAAGCTTTATGCCCCACATCAGCTCTGTCAATGCAGGGGAGGATATCGGCAGGAGGGTTGTCGATCAGATTCTCCGAAGAAGGACTGCGAGTAATTTGCGTGCTTTCTGCAAGTGGAGCAATCTCTAATGTTACTCTGCGCCACCAGGATGTGGCAGTCATCACGCATGTGTGGCGTTTTGAGATCCTGAGCCTGTCTGGATGCTTTTTGCCCCAGGGAGACAGGGCCTGGATTGGTGGGATGAACATCTCTATGGCACGCGCTGACGGTCAAGTTTTAGAGGGAGGCGTTAATGGATTTCTGAGAGCTGCCGCTGCTGTGCGAGTAGTTTCAAAGCTGAAGATGAAAAAGACACTAAAGGAAGTCAAGAAATTAATCCGAGGCTGCACTACCCTATGCCGCCACCAGTACGTACCGGCACCACCAGCAGCCTCTACTAATGCTGCACAAGATTATGACATGCCTGGGTACGGGGACCATGCAGCTGGACGACCCTGCAGGATCCAGGAATATAGATATCAGCATGTCTCTTCCCAGGAATTGAGAAACGCCTCGCCTGCTGCCGTGCCGTCGCCGGAGCTACGTTTTCCGACCAGATCCAACCGCATCCAAAAGCTACCACCACCTAGCGCTACACACGGTGAGAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901363 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

219

Amino Acids

23.78

Weight (kDa)

9.65

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	26 - 112	9.6e-13	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060
malus_domestica	MD03G1133200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0391351
rosa_laevigata	RLG00000009870
rosa_multiflora	Rmu_sc0005322.1_g000032 Rmu_sc0028307.1_g000001 Rmu_sc0033364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304640 Rroxscaffold_5G00337090
rosa_rugosa	Rorug03G0335600
rosa_samantha	Rh1BG196400 Rh1DG224400 Rh4AG036700 Rh4BG031400 Rh4CG040000 Rh4DG034300
rosa_wichuraiana	Rw4G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	318, 406, 610
AclWI	GGATC	4 cut(s)	184, 502, 515, 597
AcuI	CTGAAG	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	3 cut(s)	416, 420, 476
AfeI	AGCGCT	1 cut(s)	637
AfiI	CCNNNNNNNGG	2 cut(s)	157, 476
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	6 cut(s)	150, 219, 233, 469, 510, 540
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	7 cut(s)	11, 29, 314, 343, 491, 586, 622
AluI	AGCT	7 cut(s)	11, 29, 314, 343, 491, 586, 622
Alw26I	GTCTC	2 cut(s)	219, 538
AlwI	GGATC	4 cut(s)	184, 502, 515, 597
AlwNI	CAGNNNCTG	1 cut(s)	234
Aor51HI	AGCGCT	1 cut(s)	637
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	7 cut(s)	314, 320, 390, 434, 449, 488, 566
AseI	ATTAAT	1 cut(s)	380
AspLEI	GCGC	3 cut(s)	147, 269, 638
AspS9I	GGNCC	2 cut(s)	231, 481
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	424
BbvI	GCAGC	7 cut(s)	301, 307, 377, 436, 446, 500, 553
BceAI	ACGGC	2 cut(s)	554, 559
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	6 cut(s)	152, 221, 235, 471, 512, 542
BcoDI	GTCTC	2 cut(s)	219, 538
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	502
BfoI	RGCGCY	1 cut(s)	639
BisI	GCNGC	9 cut(s)	315, 318, 321, 391, 406, 435, 450, 489, 567
BlsI	GCNGC	9 cut(s)	316, 319, 322, 392, 407, 436, 451, 490, 568
Bme1390I	CCNGG	6 cut(s)	152, 221, 235, 471, 512, 542
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	231, 481
BmiI	GGNNCC	3 cut(s)	426, 482, 509
BmrFI	CCNGG	6 cut(s)	152, 221, 235, 471, 512, 542
BmsI	GCATC	2 cut(s)	197, 621
Bpu10I	CCTNAGC	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	251
BsaJI	CCNNGG	5 cut(s)	219, 220, 385, 470, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 476
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	6 cut(s)	152, 221, 235, 471, 512, 542
BseDI	CCNNGG	5 cut(s)	219, 220, 385, 470, 540
BseGI	GGATG	4 cut(s)	160, 212, 252, 612
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	157, 476
BseMII	CTCAG	2 cut(s)	185, 299
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	7 cut(s)	301, 307, 377, 436, 446, 500, 553
BsgI	GTGCAG	2 cut(s)	376, 435
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	422, 581
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	157, 476
BsmAI	GTCTC	2 cut(s)	219, 538
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	69, 189, 507, 602
BspACI	CCGC	3 cut(s)	318, 406, 610
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	186, 300
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	426, 482, 509
BspMAI	CTGCAG	1 cut(s)	506
BspPI	GGATC	4 cut(s)	184, 502, 515, 597
BspT107I	GGYRCC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	5 cut(s)	219, 220, 385, 470, 540
BssMI	GATC	4 cut(s)	69, 189, 507, 602
Bst2UI	CCWGG	6 cut(s)	152, 221, 235, 471, 512, 542
Bst4CI	ACNGT	2 cut(s)	275, 647
Bst6I	CTCTTC	1 cut(s)	541
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	3 cut(s)	107, 265, 564
BstDEI	CTNAG	2 cut(s)	194, 308
BstF5I	GGATG	4 cut(s)	160, 212, 252, 612
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	3 cut(s)	147, 269, 638
BstKTI	GATC	4 cut(s)	72, 192, 510, 605
BstMAI	GTCTC	2 cut(s)	219, 538
BstMBI	GATC	4 cut(s)	69, 189, 507, 602
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 178, 320, 431, 563
BstNI	CCWGG	6 cut(s)	152, 221, 235, 471, 512, 542
BstNSI	RCATGY	3 cut(s)	176, 469, 533
BstSCI	CCNGG	6 cut(s)	150, 219, 233, 469, 510, 540
BstSFI	CTRYAG	1 cut(s)	502
BstSNI	TACGTA	1 cut(s)	418
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	7 cut(s)	301, 307, 377, 436, 446, 500, 553
BstX2I	RGATCY	3 cut(s)	189, 507, 602
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	3 cut(s)	189, 507, 602
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	4 cut(s)	160, 212, 252, 612
Cac8I	GCNNGC	3 cut(s)	107, 265, 564
CaiI	CAGNNNCTG	1 cut(s)	234
CfoI	GCGC	3 cut(s)	147, 269, 638
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	231, 481
Csp6I	GTAC	3 cut(s)	415, 419, 475
CviAII	CATG	4 cut(s)	173, 466, 485, 530
CviQI	GTAC	3 cut(s)	415, 419, 475
DdeI	CTNAG	2 cut(s)	194, 308
DpnI	GATC	4 cut(s)	71, 191, 509, 604
DpnII	GATC	4 cut(s)	69, 189, 507, 602
DraIII	CACNNNGTG	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Eco105I	TACGTA	1 cut(s)	418
Eco32I	GATATC	2 cut(s)	51, 524
Eco47I	GGWCC	1 cut(s)	481
Eco47III	AGCGCT	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	6 cut(s)	150, 219, 233, 469, 510, 540
EcoRV	GATATC	2 cut(s)	51, 524
FaeI	CATG	4 cut(s)	176, 469, 488, 533
FaiI	YATR	9 cut(s)	16, 174, 260, 403, 462, 467, 486, 519, 531
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	4 cut(s)	172, 465, 484, 529
Fnu4HI	GCNGC	9 cut(s)	315, 318, 321, 391, 406, 435, 450, 489, 567
FokI	GGATG	4 cut(s)	167, 219, 259, 599
Fsp4HI	GCNGC	9 cut(s)	315, 318, 321, 391, 406, 435, 450, 489, 567
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	3 cut(s)	146, 268, 637
GluI	GCNGC	9 cut(s)	315, 318, 321, 391, 406, 435, 450, 489, 567
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	2 cut(s)	422, 581
HhaI	GCGC	3 cut(s)	147, 269, 638
Hin1II	CATG	4 cut(s)	176, 469, 488, 533
Hin6I	GCGC	3 cut(s)	145, 267, 636
HinP1I	GCGC	3 cut(s)	145, 267, 636
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	75, 652
HpaII	CCGG	2 cut(s)	422, 581
HphI	GGTGA	1 cut(s)	659
Hpy188I	TCNGA	5 cut(s)	74, 82, 309, 386, 597
Hpy188III	TCNNGA	3 cut(s)	193, 204, 373
Hpy99I	CGWCG	1 cut(s)	580
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	275, 647
HpyCH4IV	ACGT	2 cut(s)	417, 589
HpyCH4V	TGCA	6 cut(s)	40, 116, 393, 452, 488, 504
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 178, 320, 431, 563
HpyF3I	CTNAG	2 cut(s)	194, 308
HpySE526I	ACGT	2 cut(s)	417, 589
Hsp92II	CATG	4 cut(s)	176, 469, 488, 533
HspAI	GCGC	3 cut(s)	145, 267, 636
Kzo9I	GATC	4 cut(s)	69, 189, 507, 602
LmnI	GCTCC	2 cut(s)	122, 583
Lsp1109I	GCAGC	7 cut(s)	301, 307, 377, 436, 446, 500, 553
LweI	GCATC	2 cut(s)	197, 621
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	417, 589
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	71, 191, 509, 604
MboI	GATC	4 cut(s)	69, 189, 507, 602
MboII	GAAGA	4 cut(s)	17, 95, 358, 528
MflI	RGATCY	3 cut(s)	189, 507, 602
MluCI	AATT	3 cut(s)	99, 377, 545
MmeI	TCCRAC	2 cut(s)	620, 630
MnlI	CCTC	7 cut(s)	39, 53, 280, 284, 380, 448, 568
MseI	TTAA	2 cut(s)	297, 380
MslI	CAYNNNNRTG	3 cut(s)	153, 173, 257
MspA1I	CMGCKG	2 cut(s)	320, 491
MspI	CCGG	2 cut(s)	422, 581
MspR9I	CCNGG	6 cut(s)	152, 221, 235, 471, 512, 542
MvaI	CCWGG	6 cut(s)	152, 221, 235, 471, 512, 542
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	5 cut(s)	122, 178, 320, 431, 563
NdeII	GATC	4 cut(s)	69, 189, 507, 602
NlaIII	CATG	4 cut(s)	176, 469, 488, 533
NlaIV	GGNNCC	3 cut(s)	426, 482, 509
NspI	RCATGY	3 cut(s)	176, 469, 533
OliI	CACNNNNGTG	1 cut(s)	173
PasI	CCCWGGG	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	75, 652
PflMI	CCANNNNNTGG	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	9 cut(s)	316, 319, 322, 392, 407, 436, 451, 490, 568
Ppu21I	YACGTR	1 cut(s)	418
PshBI	ATTAAT	1 cut(s)	380
Psp6I	CCWGG	6 cut(s)	150, 219, 233, 469, 510, 540
PspGI	CCWGG	6 cut(s)	150, 219, 233, 469, 510, 540
PspN4I	GGNNCC	3 cut(s)	426, 482, 509
PspPI	GGNCC	2 cut(s)	231, 481
PstI	CTGCAG	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	3 cut(s)	189, 507, 602
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	416, 420, 476
RsaNI	GTAC	3 cut(s)	415, 419, 475
RseI	CAYNNNNRTG	3 cut(s)	153, 173, 257
SaqAI	TTAA	2 cut(s)	297, 380
SatI	GCNGC	9 cut(s)	315, 318, 321, 391, 406, 435, 450, 489, 567
Sau3AI	GATC	4 cut(s)	69, 189, 507, 602
Sau96I	GGNCC	2 cut(s)	231, 481
SbfI	CCTGCAGG	1 cut(s)	506
ScrFI	CCNGG	6 cut(s)	152, 221, 235, 471, 512, 542
SdaI	CCTGCAGG	1 cut(s)	506
SfaNI	GCATC	2 cut(s)	197, 621
SfcI	CTRYAG	1 cut(s)	502
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	3 cut(s)	153, 173, 257
SnaBI	TACGTA	1 cut(s)	418
Sse8387I	CCTGCAGG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	99, 377, 545
SsiI	CCGC	3 cut(s)	318, 406, 610
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	6 cut(s)	150, 219, 233, 469, 510, 540
TaaI	ACNGT	2 cut(s)	275, 647
TaiI	ACGT	2 cut(s)	420, 592
TaqI	TCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	99, 377, 545
TauI	GCSGC	2 cut(s)	320, 408
TfiI	GAWTC	2 cut(s)	75, 652
Tru1I	TTAA	2 cut(s)	297, 380
Tru9I	TTAA	2 cut(s)	297, 380
TseI	GCWGC	7 cut(s)	314, 320, 390, 434, 449, 488, 566
TspDTI	ATGAA	2 cut(s)	263, 365
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	380
XceI	RCATGY	3 cut(s)	176, 469, 533
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.