Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028307.1

Orthogroup ID

OG0010554

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 758

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

ctgcgccaacaggatgacgaggccatcacatatgagggacgtttcgaaatcctgagcttgtctggatgccttatgccccataacggggcctggcgtggtgcaatgagtgtctctctggcaggcgccaacggtgcaattttagggggaggcattaatggaattctgagagctgctactcctgtgcaagttgtggtaggtagtttcctagctggtgatccgaaaggaaagggtaagaagaagggggatgctgaaccacctgatactgagcctccacctccgccaccgccgtcgcctccaccgccagcaccagaaccgccacctgcaccaggaccaccaccaccaccaccaccaccaccacaagagcccatgggattctgggggatatacgataatagctggccgagaatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901363 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

136

Amino Acids

14.07

Weight (kDa)

5.02

Isoelectric Point (pI)

70.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060
malus_domestica	MD03G1133200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0391351
rosa_laevigata	RLG00000009870
rosa_multiflora	Rmu_sc0005322.1_g000032 Rmu_sc0028307.1_g000001 Rmu_sc0033364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304640 Rroxscaffold_5G00337090
rosa_rugosa	Rorug03G0335600
rosa_samantha	Rh1BG196400 Rh1DG224400 Rh4AG036700 Rh4BG031400 Rh4CG040000 Rh4DG034300
rosa_wichuraiana	Rw4G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	4 cut(s)	278, 284, 299, 314
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	4 cut(s)	83, 84, 85, 326
AjnI	CCWGG	2 cut(s)	89, 325
AluBI	AGCT	4 cut(s)	57, 170, 209, 396
AluI	AGCT	4 cut(s)	57, 170, 209, 396
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	3 cut(s)	21, 87, 398
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	159
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	6, 125
AspS9I	GGNCC	2 cut(s)	87, 329
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	91, 327
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	91, 327
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	87, 329
BmiI	GGNNCC	2 cut(s)	88, 124
BmrFI	CCNGG	2 cut(s)	91, 327
BmsI	GCATC	2 cut(s)	56, 235
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 84, 85, 326
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	91, 327
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	19, 71, 250
BseLI	CCNNNNNNNGG	4 cut(s)	83, 84, 85, 326
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	44, 155, 255
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	23, 89, 400
BshNI	GGYRCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	4 cut(s)	83, 84, 85, 326
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	23, 89, 400
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	4 cut(s)	278, 284, 299, 314
BspANI	GGCC	3 cut(s)	23, 89, 400
BspCNI	CTCAG	3 cut(s)	45, 156, 256
BspLI	GGNNCC	2 cut(s)	88, 124
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	91, 327
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	121, 303, 398
BstDEI	CTNAG	3 cut(s)	53, 164, 264
BstDSI	CCRYGG	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	19, 71, 250
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	6, 125
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 298
BstNI	CCWGG	2 cut(s)	91, 327
BstSCI	CCNGG	2 cut(s)	89, 325
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	23, 89, 400
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	19, 71, 250
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	121, 303, 398
CfoI	GCGC	2 cut(s)	6, 125
Cfr13I	GGNCC	2 cut(s)	87, 329
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	9 cut(s)	23, 57, 89, 170, 209, 268, 364, 396, 400
CviKI_1	RGCY	9 cut(s)	23, 57, 89, 170, 209, 268, 364, 396, 400
DdeI	CTNAG	3 cut(s)	53, 164, 264
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	398
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	89, 325
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	370
FaiI	YATR	6 cut(s)	31, 33, 74, 81, 368, 385
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	3 cut(s)	26, 78, 257
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	2 cut(s)	5, 124
GluI	GCNGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	23, 89, 400
HhaI	GCGC	2 cut(s)	6, 125
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	2 cut(s)	4, 123
HinP1I	GCGC	2 cut(s)	4, 123
HinfI	GANTC	1 cut(s)	372
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	165, 219
Hpy188III	TCNNGA	2 cut(s)	52, 63
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	4 cut(s)	101, 134, 184, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 298
HpyF3I	CTNAG	3 cut(s)	53, 164, 264
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	2 cut(s)	4, 123
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	56, 235
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	40
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	2 cut(s)	135, 159
Mly113I	GGCGCC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	13, 28, 140, 279, 285, 303
MseI	TTAA	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	91, 327
MvaI	CCWGG	2 cut(s)	91, 327
MwoI	GCNNNNNNNGC	2 cut(s)	131, 298
NarI	GGCGCC	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	366
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	88, 124
NspV	TTCGAA	1 cut(s)	45
PaqCI	CACCTGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	172
PluTI	GGCGCC	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	89, 325
PspGI	CCWGG	2 cut(s)	89, 325
PspN4I	GGNNCC	2 cut(s)	88, 124
PspPI	GGNCC	2 cut(s)	87, 329
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	87, 329
ScrFI	CCNGG	2 cut(s)	91, 327
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	43, 59, 172, 199, 211, 259, 277, 322, 398
SfaNI	GCATC	2 cut(s)	56, 235
SfoI	GGCGCC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	45
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	2 cut(s)	135, 159
SsiI	CCGC	4 cut(s)	278, 284, 299, 314
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	89, 325
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	135, 159
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	159
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.