Rh1BG196400

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010554
Physical Location & Seq
Reverse (-)
31330524 .. 31335363
4840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG196400.1

Sequence Viewer

Length: 369 bp
ATGCCCCACATCATATCTGTCAATGCTGGGGAGGGGCGTTTTGAGATCCTGAGCCTGTCTGGATGCTTTTTGCCCCAAGGAGACAGGGCCTGGATTGGTGGGATGAACATCTCTATGGCACGCGCTGACCGTCAAGTTTTAGGGGGAGGGGTTAATGGATTTCTGAGAGCTGCCGCTCCTGTGCAAGTTGTGGTGGGTAGTTTCCCAGCTGGTGATCAGAAAAACCAGAAAGGAAAAGGTTCAAAAAAGTCGAAGGCTGAACCATCTAACACTTCGCCGCCGCCGTCACCAGCACCAGCGCCAGCACAAGCACCAGCACCAGAACCAGAACCAGAACCCACACCCTTACCCTTTACCGTGGGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

122

Amino Acids

12.54

Weight (kDa)

8.98

Isoelectric Point (pI)

70.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 11 - 69 2.4e-10 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 176
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 174, 278, 281
AclWI GGATC 1 cut(s) 40
AgsI TTSAA 1 cut(s) 243
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 2 cut(s) 170, 209
AluI AGCT 2 cut(s) 170, 209
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 90
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 2 cut(s) 125, 301
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 224, 279
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 91
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 302
BisI GCNGC 4 cut(s) 171, 174, 278, 281
BlsI GCNGC 4 cut(s) 172, 175, 279, 282
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 76, 357
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 76, 357
BseGI GGATG 2 cut(s) 68, 108
BseJI GATNNNNATC 1 cut(s) 107
BseMII CTCAG 2 cut(s) 41, 155
BseXI GCAGC 1 cut(s) 157
BseYI CCCAGC 2 cut(s) 26, 205
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 45, 214
BspACI CCGC 3 cut(s) 174, 278, 281
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 42, 156
BspFNI CGCG 1 cut(s) 123
BspPI GGATC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 76, 357
BssMI GATC 2 cut(s) 45, 214
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 131, 358
BstC8I GCNNGC 2 cut(s) 121, 303
BstDEI CTNAG 2 cut(s) 50, 164
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 68, 108
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 125, 301
BstKTI GATC 2 cut(s) 48, 217
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 45, 214
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 68, 108
Cac8I GCNNGC 2 cut(s) 121, 303
CaiI CAGNNNCTG 1 cut(s) 90
CfoI GCGC 2 cut(s) 125, 301
Cfr13I GGNCC 1 cut(s) 87
CviJI RGCY 5 cut(s) 54, 89, 170, 209, 257
CviKI_1 RGCY 5 cut(s) 54, 89, 170, 209, 257
DdeI CTNAG 2 cut(s) 50, 164
DpnI GATC 2 cut(s) 47, 216
DpnII GATC 2 cut(s) 45, 214
Eco130I CCWWGG 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaiI YATR 2 cut(s) 14, 116
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 171, 174, 278, 281
FokI GGATG 2 cut(s) 75, 115
Fsp4HI GCNGC 4 cut(s) 171, 174, 278, 281
FspBI CTAG 1 cut(s) 367
GlaI GCGC 2 cut(s) 124, 300
GluI GCNGC 4 cut(s) 171, 174, 278, 281
GsaI CCCAGC 2 cut(s) 30, 209
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 2 cut(s) 125, 301
Hin6I GCGC 2 cut(s) 123, 299
HinP1I GCGC 2 cut(s) 123, 299
HinfI GANTC 1 cut(s) 363
HphI GGTGA 2 cut(s) 224, 279
Hpy188I TCNGA 2 cut(s) 165, 219
Hpy188III TCNNGA 2 cut(s) 49, 60
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 131, 358
HpyCH4V TGCA 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 50, 164
HspAI GCGC 2 cut(s) 123, 299
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 45, 214
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 285
MalI GATC 2 cut(s) 47, 216
MbiI CCGCTC 1 cut(s) 176
MboI GATC 2 cut(s) 45, 214
MflI RGATCY 1 cut(s) 45
MnlI CCTC 2 cut(s) 25, 140
MroXI GAANNNNTTC 1 cut(s) 238
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 123
NdeII GATC 2 cut(s) 45, 214
NmuCI GTSAC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 281
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 4 cut(s) 172, 175, 279, 282
Psp6I CCWGG 1 cut(s) 89
PspFI CCCAGC 2 cut(s) 26, 205
PspGI CCWGG 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 171, 174, 278, 281
Sau3AI GATC 2 cut(s) 45, 214
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 91
SetI ASST 3 cut(s) 172, 211, 241
SfaNI GCATC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 113
SsiI CCGC 3 cut(s) 174, 278, 281
SspMI CTAG 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 131, 358
TaqI TCGA 1 cut(s) 251
TauI GCSGC 3 cut(s) 176, 280, 283
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.