Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010554

Physical Location & Seq

Genomic Coordinates Reverse (-)

5841518 .. 5847565

Gene Structure 6048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTTGGGTTTAAGAATGTCTGCGGGAGCGTTATGAGATATTTCCATGAAAGACCACGAGTAATCTGCGTGATATCTGCAAGTGGAGTAATCTCTAGTGTTAATCTGCGCCAACAGGATGACGAGGCCATCACATATGAGGGACGTTTCGAAATCCTGAGCTTGTCTGGATGCCTTGTGCCCCATAACGGGGCCTGGCGTGGTGCAATGAGTGTCTCTCTGGCAGGCGCCAACGGTCTAATTTTAGGGGGAGGCATTAATGGAATTCTGAGAGCTGCCACTCCTGTGCAAGGACGTGCAAGTAATTTTCGTGTGCATCGTGCCTCCAAAGCATCTCTTTTAGATGGCCTTGAGGAAGGTGGTCTCAGGGCCTCCTCCTCATACTCCGATATAAATGAGAAGGACAATGACAAAGCTGTGCAAAGTTTGCAAGACAGAGTTGTTTTCCTAAAGAGAATAACAGGTGACATACATGAAGAGGTGGAAAGCCATAATCGTTTGCTTGACAGAATGGGAAATGACATGGATGCATCAAGGGGTATAATGTCTGGAACAATGGATCGGTTTAAGATGGGTTCGCAGATTATTCATGCATGGTTGAAGCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.21

Weight (kDa)

8.51

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	7 - 97	3.4e-13	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060 FvH4_4g03060
malus_domestica	MD03G1133200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0391351
rosa_laevigata	RLG00000009870
rosa_multiflora	Rmu_sc0005322.1_g000032 Rmu_sc0028307.1_g000001 Rmu_sc0033364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304640 Rroxscaffold_5G00337090
rosa_rugosa	Rorug03G0335600
rosa_samantha	Rh1BG196400 Rh1DG224400 Rh4AG036700 Rh4BG031400 Rh4CG040000 Rh4DG034300
rosa_wichuraiana	Rw4G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	4 cut(s)	188, 189, 190, 290
AgsI	TTSAA	1 cut(s)	601
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	194
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	4 cut(s)	162, 275, 416, 607
AluI	AGCT	4 cut(s)	162, 275, 416, 607
Alw26I	GTCTC	2 cut(s)	220, 368
AlwI	GGATC	1 cut(s)	567
AoxI	GGCC	4 cut(s)	126, 192, 346, 369
ApeKI	GCWGC	2 cut(s)	275, 604
ApoI	RAATTY	1 cut(s)	264
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	111, 230
AspS9I	GGNCC	2 cut(s)	192, 369
AsuHPI	GGTGA	1 cut(s)	476
AsuII	TTCGAA	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	3 cut(s)	137, 338, 565
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	220, 368
BfaI	CTAG	2 cut(s)	96, 610
BfoI	RGCGCY	1 cut(s)	231
BisI	GCNGC	2 cut(s)	276, 605
BlsI	GCNGC	2 cut(s)	277, 606
Bme1390I	CCNGG	1 cut(s)	196
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	192, 369
BmiI	GGNNCC	2 cut(s)	193, 229
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	5 cut(s)	161, 325, 341, 517, 539
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
Bpu10I	CCTNAGC	1 cut(s)	158
Bpu14I	TTCGAA	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 189, 190, 290
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	3 cut(s)	124, 176, 532
BseLI	CCNNNNNNNGG	4 cut(s)	188, 189, 190, 290
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	149, 260, 379
BseRI	GAGGAG	2 cut(s)	364, 367
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	4 cut(s)	128, 194, 348, 371
BshNI	GGYRCC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	4 cut(s)	188, 189, 190, 290
BsmAI	GTCTC	2 cut(s)	220, 368
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	128, 194, 348, 371
Bso31I	GGTCTC	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	4 cut(s)	128, 194, 348, 371
BspCNI	CTCAG	3 cut(s)	150, 261, 378
BspLI	GGNNCC	2 cut(s)	193, 229
BspPI	GGATC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	213
BssMI	GATC	1 cut(s)	559
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstBI	TTCGAA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	158, 269, 365
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	124, 176, 532
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	111, 230
BstKTI	GATC	1 cut(s)	562
BstMAI	GTCTC	2 cut(s)	220, 368
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 427
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	128, 194, 348, 371
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	124, 176, 532
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	2 cut(s)	111, 230
Cfr13I	GGNCC	2 cut(s)	192, 369
CviAII	CATG	5 cut(s)	47, 473, 523, 590, 594
CviJI	RGCY	9 cut(s)	128, 162, 194, 275, 348, 371, 416, 489, 607
CviKI_1	RGCY	9 cut(s)	128, 162, 194, 275, 348, 371, 416, 489, 607
DdeI	CTNAG	3 cut(s)	158, 269, 365
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoO109I	RGGNCCY	2 cut(s)	192, 369
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	75
EcoT22I	ATGCAT	2 cut(s)	532, 595
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	5 cut(s)	50, 476, 526, 593, 597
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	5 cut(s)	46, 472, 522, 589, 593
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	276, 605
FokI	GGATG	3 cut(s)	131, 183, 539
Fsp4HI	GCNGC	2 cut(s)	276, 605
FspBI	CTAG	2 cut(s)	96, 610
GlaI	GCGC	2 cut(s)	110, 229
GluI	GCNGC	2 cut(s)	276, 605
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	128, 194, 348, 371
HhaI	GCGC	2 cut(s)	111, 230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	50, 476, 526, 593, 597
Hin6I	GCGC	2 cut(s)	109, 228
HinP1I	GCGC	2 cut(s)	109, 228
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	270, 388
Hpy188III	TCNNGA	3 cut(s)	157, 168, 549
HpyAV	CCTTC	2 cut(s)	350, 394
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	145, 295
HpyCH4V	TGCA	9 cut(s)	80, 206, 289, 299, 316, 421, 430, 530, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 427
HpyF3I	CTNAG	3 cut(s)	158, 269, 365
HpySE526I	ACGT	2 cut(s)	145, 295
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	50, 476, 526, 593, 597
HspAI	GCGC	2 cut(s)	109, 228
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	5 cut(s)	161, 325, 341, 517, 539
MaeI	CTAG	2 cut(s)	96, 610
MaeII	ACGT	2 cut(s)	145, 295
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	240, 264, 304
Mly113I	GGCGCC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	118, 133, 245, 334, 346, 382, 385, 388, 472
Mph1103I	ATGCAT	2 cut(s)	532, 595
MseI	TTAA	4 cut(s)	12, 102, 258, 567
MslI	CAYNNNNRTG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	329, 427
NarI	GGCGCC	1 cut(s)	228
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	5 cut(s)	50, 476, 526, 593, 597
NlaIV	GGNNCC	2 cut(s)	193, 229
NmuCI	GTSAC	1 cut(s)	464
NsiI	ATGCAT	2 cut(s)	532, 595
NspV	TTCGAA	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	277, 606
PluTI	GGCGCC	1 cut(s)	231
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	193, 229
PspPI	GGNCC	2 cut(s)	192, 369
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	12, 102, 258, 567
SatI	GCNGC	2 cut(s)	276, 605
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	2 cut(s)	192, 369
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	9 cut(s)	148, 164, 277, 298, 361, 418, 466, 483, 609
SfaNI	GCATC	5 cut(s)	161, 325, 341, 517, 539
SfoI	GGCGCC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	240, 264, 304
SsiI	CCGC	1 cut(s)	24
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	96, 610
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	148, 298
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	240, 264, 304
Tru1I	TTAA	4 cut(s)	12, 102, 258, 567
Tru9I	TTAA	4 cut(s)	12, 102, 258, 567
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	275, 604
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	63, 489, 578
VspI	ATTAAT	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	2 cut(s)	96, 610
Zsp2I	ATGCAT	2 cut(s)	532, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.