Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005480.1

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Reverse (-)

23229 .. 29974

Gene Structure 6746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2460 bp

atggagttttcagtgtccaccccacgctattaccatcccaatcccaaacccactactaccaccaccaccttttctctcaaacccccaaattcccaagcctcctcctcccctctctcctcatctaaccaacttcgtcgccccaaaaccatcaccactcctcctcctcctcagcccaccaaacccatctccaaaatcccctctaaccccttcaagaacctcactaatcccacccatgtccccactccaccgattattaccaccaccgattctaacacctcttctctcaccaacaagctctggctcaccagcaagctctctcctcctccaccgccaccagacatagaagacgacgaagaagaagctgtcaagtacaatgaacccataaagaaatcgcagctgcccaaagtcgagttccggcaagagggtaagattttcgtggggaatttacccaactggctcaagaaaaacgaggtctccgagtttttccggcaattcggaccgataacgaatgtgattctgatcaagggccacgacagcactgagagaaatgctggtttcggattcgttatatacggcggccccaatgcgaccaagtctgccatgaaggcggtattgaaggaaaaagctgagcagaggacgcggtggattgagcaagactccggcggcggtgttgagtaccgagctcggtctaagtggcacaaggagaggcagagctctcgcaatgccttgcgcaaggttatggagacggagccggagaactggcaggcggtggttcagacttttgagaggattaacaagccttctagaggagagtatggtctgatggtcaagtattatgctaggcgaggggacatgcatcgtgctcgtgaaacatttgagagcatgagagcaagaggaatagagccgacttcacatgtatacacaagcctgattcacgcttatgcagttggcagagacatggaagaagcattatcttgtgttagaaaaatgaaggatgagggcattgaaatgagtttggtgacttacagtattattgttgggggatttgcaaaagttggcaatgccgaagctgcagatcactggtttaaggaggccaaagagagacatacaactttaaatgcaatcatttatgggaatattgtttatgcacattgtcaatcatgtaatatggatcgagctgaggcattggtacgagaaatggaagaagcagttgtagaagatttgatgaaggatggtttgaagcccgatgtagtcctgtataataacattataacagcattttgtggaatgggtaacatgaatcgcgctgttcgcaccgtcaaagaaatgcagagggagaggcatagacctacatcacgtacgtttatgccgataatacatggttttgcaagagctggagatatgagaagagccctagagatttttgacatgatgcggatgagtggatgcattccaactgtccatactttcaatgctctagttcttggtcttgtggagaagcggcagatggagaaggctgttgaaatattggatgagatgacacttgcaggaattagtccaaatgaacacacatacacaactatcatgaatggttatgcatctttaggtgatactgggaaagctttcgagtatttttccaaattgaggaatgatggcctagagattgatgttttcacatatgaagcattgctgaaggcatgttgcaaagcaggcaaaatgcagagtgctttagctgtcaccaaggaaatgagtgctcaaaaaattccaaggaacacctttgtgtacaacatcttagttgatggatgggctcgaagaggtgatgtttgggaggctgctgacttgatgcagcaaatgaaacgggaaggggttcaacctgatatccactcctacacgtctttcataaatgcttgttgcaaggccggagacatgcagagagctgcaaaaacaattgaagagatgaaaacttttggagtgaagccaaatgttaaaacttataccacattgatacatggttgggcgcgtgcttctctaccggagaaggctttgagatgcttcaaggatatgaagttggctggattgaagccagacaaagctgtgtaccattgcttgatgacgtcactgttgtcaagggctactgttgctgaagcttacatttattctggtcttctgtctatctgcaaggagatgatagaatctggattgactgtggatatgggaactgcagttcactggtcgaggtgcttacgcaaaattgaaagaacaggtggtgagcttaccgaatccctgcagaagaccttccctcctgattggaactcttgtcatactttgtacgtgagttccgacgtagacagtgatgatgaagttgacattactagtgatggtgatgatgatgacatggagtttgctagtagaatagataacgttatgatgactgatgaggatagtctaaagcacggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

819

Amino Acids

92.29

Weight (kDa)

8.04

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	144 - 208	7.1e-11	RNA recognition motif
PPR_2	PF13041	274 - 315	2.2e-08	PPR repeat family
TPR_24	PF23276	280 - 393	7.6e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	285 - 358	2.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	302 - 351	2.7e-10	PPR repeat family
PPR	PF01535	306 - 335	5.1e-06	PPR repeat
PPR_3	PF13812	307 - 349	8.5e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	351 - 493	3.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	404 - 459	6.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	411 - 444	7.7e-08	PPR repeat
PPR_2	PF13041	415 - 455	3.2e-09	PPR repeat family
PPR_2	PF13041	454 - 497	1.5e-08	PPR repeat family
PPR_3	PF13812	454 - 494	4.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	455 - 547	5.2e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	469 - 573	2e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	485 - 533	7e-14	PPR repeat family
PPR_2	PF13041	524 - 569	1.7e-10	PPR repeat family
PPR_3	PF13812	546 - 599	6.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	551 - 584	8.4e-07	PPR repeat
PPR_2	PF13041	556 - 603	1.1e-09	PPR repeat family
PPR_long	PF17177	562 - 705	8.9e-15	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	591 - 639	1.8e-14	PPR repeat family
TPR_24	PF23276	603 - 705	2.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	614 - 665	2.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	622 - 654	1.4e-07	PPR repeat
PPR_2	PF13041	628 - 673	9e-14	PPR repeat family
PPR	PF01535	629 - 658	2.4e-06	PPR repeat
PPR_3	PF13812	652 - 704	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	657 - 689	1.8e-06	PPR repeat
PPR_2	PF13041	664 - 707	3.6e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1271
AatII	GACGTC	1 cut(s)	2117
Acc16I	TGCGCA	1 cut(s)	731
AccI	GTMKAC	2 cut(s)	918, 2346
AccII	CGCG	3 cut(s)	640, 1305, 2020
AciI	CCGC	9 cut(s)	329, 576, 608, 640, 663, 666, 767, 1435, 1501
AclI	AACGTT	1 cut(s)	2421
AclWI	GGATC	1 cut(s)	1179
AcsI	RAATTY	3 cut(s)	88, 442, 1761
AcuI	CTGAAG	2 cut(s)	1712, 2163
AcyI	GRCGYC	1 cut(s)	2114
AfaI	GTAC	7 cut(s)	371, 677, 1191, 1360, 1784, 2099, 2330
AfiI	CCNNNNNNNGG	3 cut(s)	421, 806, 1644
AflIII	ACRYGT	2 cut(s)	913, 1890
AhlI	ACTAGT	1 cut(s)	2372
AjiI	CACGTC	1 cut(s)	1893
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AleI	CACNNNNGTG	1 cut(s)	1778
AloI	GAACNNNNNNTCC	2 cut(s)	2208, 2240
Alw21I	GWGCWC	4 cut(s)	685, 716, 865, 1756
Alw26I	GTCTC	5 cut(s)	478, 737, 948, 1096, 1917
AlwI	GGATC	1 cut(s)	1179
AoxI	GGCC	5 cut(s)	526, 577, 1092, 1654, 1917
ApeKI	GCWGC	6 cut(s)	394, 397, 1070, 1832, 1846, 1937
ApoI	RAATTY	3 cut(s)	88, 442, 1761
ArsI	GACNNNNNNTTYG	2 cut(s)	2384, 2416
Asp700I	GAANNNNTTC	3 cut(s)	1622, 1866, 2294
AspLEI	GCGC	3 cut(s)	732, 1307, 2020
AspS9I	GGNCC	3 cut(s)	497, 526, 578
AsuHPI	GGTGA	9 cut(s)	142, 277, 295, 1030, 1619, 1729, 1829, 2279, 2393
AvaII	GGWCC	1 cut(s)	497
BanII	GRGCYC	4 cut(s)	685, 716, 1414, 1810
BauI	CACGAG	1 cut(s)	864
BbsI	GAAGAC	3 cut(s)	351, 2156, 2297
Bbv12I	GWGCWC	4 cut(s)	685, 716, 865, 1756
BbvCI	CCTCAGC	2 cut(s)	168, 1179
BbvI	GCAGC	6 cut(s)	384, 406, 1057, 1819, 1858, 1924
BceAI	ACGGC	1 cut(s)	589
BcgI	CGANNNNNNTGC	4 cut(s)	698, 732, 845, 879
BclI	TGATCA	1 cut(s)	519
BcoDI	GTCTC	5 cut(s)	478, 737, 948, 1096, 1917
BcuI	ACTAGT	1 cut(s)	2372
BfaI	CTAG	7 cut(s)	804, 840, 1415, 1478, 1658, 2373, 2406
BfmI	CTRYAG	3 cut(s)	1071, 2220, 2285
BglI	GCCNNNNNGGC	1 cut(s)	605
BisI	GCNGC	9 cut(s)	395, 398, 577, 664, 1071, 1502, 1833, 1847, 1938
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	9 cut(s)	396, 399, 578, 665, 1072, 1503, 1834, 1848, 1939
Bme18I	GGWCC	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	1893
BmgT120I	GGNCC	3 cut(s)	497, 526, 578
BmiI	GGNNCC	2 cut(s)	580, 750
BmrI	ACTGGG	1 cut(s)	1623
BmsI	GCATC	6 cut(s)	865, 1422, 1436, 1607, 1833, 2039
BmuI	ACTGGG	1 cut(s)	1623
BpiI	GAAGAC	3 cut(s)	351, 2156, 2297
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpmI	CTGGAG	1 cut(s)	1416
Bpu10I	CCTNAGC	2 cut(s)	168, 1179
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	443
BsaAI	YACGTR	2 cut(s)	1358, 2332
BsaBI	GATNNNNATC	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	2114
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	1740, 1766
BsaWI	WCCGGW	1 cut(s)	2032
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 172, 175, 458, 488, 2284, 2314
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 806, 1644
Bse1I	ACTGG	5 cut(s)	458, 764, 1085, 1618, 2234
Bse3DI	GCAATG	4 cut(s)	727, 1066, 1685, 2101
Bse8I	GATNNNNATC	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	1740, 1766
BseGI	GGATG	7 cut(s)	34, 1000, 1237, 1443, 1451, 1537, 1808
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	3 cut(s)	421, 806, 1644
BseMI	GCAATG	4 cut(s)	727, 1066, 1685, 2101
BseMII	CTCAG	4 cut(s)	182, 531, 618, 1170
BseNI	ACTGG	5 cut(s)	458, 764, 1085, 1618, 2234
BseXI	GCAGC	6 cut(s)	384, 406, 1057, 1819, 1858, 1924
Bsh1236I	CGCG	3 cut(s)	640, 1305, 2020
BshFI	GGCC	5 cut(s)	528, 579, 1094, 1656, 1919
BsiHKAI	GWGCWC	4 cut(s)	685, 716, 865, 1756
BsiSI	CCGG	6 cut(s)	415, 487, 660, 752, 1920, 2033
BsiWI	CGTACG	1 cut(s)	1358
BslFI	GGGAC	2 cut(s)	221, 863
BslI	CCNNNNNNNGG	3 cut(s)	421, 806, 1644
BsmAI	GTCTC	5 cut(s)	478, 737, 948, 1096, 1917
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	2 cut(s)	221, 863
BsmI	GAATGC	1 cut(s)	1449
BsnI	GGCC	5 cut(s)	528, 579, 1094, 1656, 1919
Bso31I	GGTCTC	1 cut(s)	478
Bsp1286I	GDGCHC	6 cut(s)	685, 716, 865, 1414, 1756, 1810
Bsp1407I	TGTACA	1 cut(s)	1782
Bsp143I	GATC	3 cut(s)	519, 1075, 1171
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	9 cut(s)	329, 576, 608, 640, 663, 666, 767, 1435, 1501
BspANI	GGCC	5 cut(s)	528, 579, 1094, 1656, 1919
BspCNI	CTCAG	4 cut(s)	181, 532, 619, 1171
BspFNI	CGCG	3 cut(s)	640, 1305, 2020
BspHI	TCATGA	1 cut(s)	1584
BspLI	GGNNCC	2 cut(s)	580, 750
BspMAI	CTGCAG	3 cut(s)	1075, 2224, 2289
BspPI	GGATC	1 cut(s)	1179
BspQI	GCTCTTC	1 cut(s)	1402
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	4 cut(s)	727, 1066, 1685, 2101
BsrGI	TGTACA	1 cut(s)	1782
BsrI	ACTGG	5 cut(s)	458, 764, 1085, 1618, 2234
BssECI	CCNNGG	2 cut(s)	1740, 1766
BssMI	GATC	3 cut(s)	519, 1075, 1171
BssNAI	GTATAC	1 cut(s)	919
BssNI	GRCGYC	1 cut(s)	2114
BssSI	CACGAG	1 cut(s)	864
BssT1I	CCWWGG	2 cut(s)	1740, 1766
Bst1107I	GTATAC	1 cut(s)	919
Bst2BI	CACGAG	1 cut(s)	864
Bst4CI	ACNGT	7 cut(s)	1028, 1318, 1459, 2121, 2137, 2206, 2351
Bst6I	CTCTTC	4 cut(s)	283, 1402, 1807, 1947
BstACI	GRCGYC	1 cut(s)	2114
BstAUI	TGTACA	1 cut(s)	1782
BstBAI	YACGTR	2 cut(s)	1358, 2332
BstC8I	GCNNGC	4 cut(s)	311, 765, 1711, 2022
BstDEI	CTNAG	6 cut(s)	168, 540, 627, 690, 1179, 1792
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	7 cut(s)	34, 1000, 1237, 1443, 1451, 1537, 1808
BstFNI	CGCG	3 cut(s)	640, 1305, 2020
BstHHI	GCGC	3 cut(s)	732, 1307, 2020
BstKTI	GATC	3 cut(s)	522, 1078, 1174
BstMAI	GTCTC	5 cut(s)	478, 737, 948, 1096, 1917
BstMBI	GATC	3 cut(s)	519, 1075, 1171
BstMWI	GCNNNNNNNGC	7 cut(s)	534, 605, 637, 1070, 1311, 1710, 2138
BstNSI	RCATGY	4 cut(s)	856, 917, 1701, 1930
BstSFI	CTRYAG	3 cut(s)	1071, 2220, 2285
BstUI	CGCG	3 cut(s)	640, 1305, 2020
BstV1I	GCAGC	6 cut(s)	384, 406, 1057, 1819, 1858, 1924
BstV2I	GAAGAC	3 cut(s)	351, 2156, 2297
BstZ17I	GTATAC	1 cut(s)	919
BsuRI	GGCC	5 cut(s)	528, 579, 1094, 1656, 1919
BtrI	CACGTC	1 cut(s)	1893
BtsCI	GGATG	7 cut(s)	34, 1000, 1237, 1443, 1451, 1537, 1808
BtsIMutI	CAGTG	6 cut(s)	18, 537, 1078, 2117, 2227, 2356
Cac8I	GCNNGC	4 cut(s)	311, 765, 1711, 2022
CciI	TCATGA	1 cut(s)	1584
CfoI	GCGC	3 cut(s)	732, 1307, 2020
Cfr13I	GGNCC	3 cut(s)	497, 526, 578
CpoI	CGGWCCG	1 cut(s)	497
CseI	GACGC	1 cut(s)	646
Csp6I	GTAC	7 cut(s)	370, 676, 1190, 1359, 1783, 2098, 2329
CspI	CGGWCCG	1 cut(s)	497
CviQI	GTAC	7 cut(s)	370, 676, 1190, 1359, 1783, 2098, 2329
DdeI	CTNAG	6 cut(s)	168, 540, 627, 690, 1179, 1792
DpnI	GATC	3 cut(s)	521, 1077, 1173
DpnII	GATC	3 cut(s)	519, 1075, 1171
DraI	TTTAAA	1 cut(s)	1116
Eam1104I	CTCTTC	4 cut(s)	283, 1402, 1807, 1947
EarI	CTCTTC	4 cut(s)	283, 1402, 1807, 1947
Ecl136II	GAGCTC	2 cut(s)	683, 714
Eco130I	CCWWGG	2 cut(s)	1740, 1766
Eco24I	GRGCYC	4 cut(s)	685, 716, 1414, 1810
Eco31I	GGTCTC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	1879
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	2 cut(s)	683, 714
Eco57I	CTGAAG	2 cut(s)	1712, 2163
EcoICRI	GAGCTC	2 cut(s)	683, 714
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoRV	GATATC	1 cut(s)	1879
EcoT14I	CCWWGG	2 cut(s)	1740, 1766
EcoT22I	ATGCAT	3 cut(s)	858, 1451, 1600
EcoT38I	GRGCYC	4 cut(s)	685, 716, 1414, 1810
ErhI	CCWWGG	2 cut(s)	1740, 1766
Esp3I	CGTCTC	1 cut(s)	737
FaqI	GGGAC	2 cut(s)	221, 863
FauNDI	CATATG	1 cut(s)	1678
FbaI	TGATCA	1 cut(s)	519
FblI	GTMKAC	2 cut(s)	918, 2346
Fnu4HI	GCNGC	9 cut(s)	395, 398, 577, 664, 1071, 1502, 1833, 1847, 1938
FokI	GGATG	7 cut(s)	21, 1007, 1244, 1450, 1458, 1544, 1815
FriOI	GRGCYC	4 cut(s)	685, 716, 1414, 1810
Fsp4HI	GCNGC	9 cut(s)	395, 398, 577, 664, 1071, 1502, 1833, 1847, 1938
FspBI	CTAG	7 cut(s)	804, 840, 1415, 1478, 1658, 2373, 2406
FspI	TGCGCA	1 cut(s)	731
GlaI	GCGC	3 cut(s)	731, 1306, 2019
GluI	GCNGC	9 cut(s)	395, 398, 577, 664, 1071, 1502, 1833, 1847, 1938
GsuI	CTGGAG	1 cut(s)	1416
HaeIII	GGCC	5 cut(s)	528, 579, 1094, 1656, 1919
HapII	CCGG	6 cut(s)	415, 487, 660, 752, 1920, 2033
HgaI	GACGC	1 cut(s)	646
HhaI	GCGC	3 cut(s)	732, 1307, 2020
Hin1I	GRCGYC	1 cut(s)	2114
Hin6I	GCGC	3 cut(s)	730, 1305, 2018
HinP1I	GCGC	3 cut(s)	730, 1305, 2018
HincII	GTYRAC	1 cut(s)	2365
HindII	GTYRAC	1 cut(s)	2365
HindIII	AAGCTT	2 cut(s)	1620, 2145
HinfI	GANTC	8 cut(s)	266, 514, 561, 656, 931, 1300, 2192, 2279
HpaII	CCGG	6 cut(s)	415, 487, 660, 752, 1920, 2033
HphI	GGTGA	9 cut(s)	142, 277, 295, 1030, 1619, 1729, 1829, 2279, 2393
Hpy166II	GTNNAC	7 cut(s)	18, 919, 1783, 2098, 2227, 2347, 2365
Hpy188I	TCNGA	7 cut(s)	478, 497, 519, 560, 777, 822, 2341
Hpy188III	TCNNGA	7 cut(s)	211, 460, 804, 866, 1585, 2196, 2303
Hpy8I	GTNNAC	7 cut(s)	18, 919, 1783, 2098, 2227, 2347, 2365
Hpy99I	CGWCG	3 cut(s)	138, 353, 2345
HpyCH4III	ACNGT	7 cut(s)	1028, 1318, 1459, 2121, 2137, 2206, 2351
HpyCH4IV	ACGT	7 cut(s)	1357, 1361, 1892, 2114, 2331, 2343, 2421
HpyF10VI	GCNNNNNNNGC	7 cut(s)	534, 605, 637, 1070, 1311, 1710, 2138
HpyF3I	CTNAG	6 cut(s)	168, 540, 627, 690, 1179, 1792
HpySE526I	ACGT	7 cut(s)	1357, 1361, 1892, 2114, 2331, 2343, 2421
Hsp92I	GRCGYC	1 cut(s)	2114
HspAI	GCGC	3 cut(s)	730, 1305, 2018
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	519, 1075, 1171
LguI	GCTCTTC	1 cut(s)	1402
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	6 cut(s)	384, 406, 1057, 1819, 1858, 1924
LweI	GCATC	6 cut(s)	865, 1422, 1436, 1607, 1833, 2039
MaeI	CTAG	7 cut(s)	804, 840, 1415, 1478, 1658, 2373, 2406
MaeII	ACGT	7 cut(s)	1357, 1361, 1892, 2114, 2331, 2343, 2421
MaeIII	GTNAC	4 cut(s)	1018, 1292, 1735, 2115
MalI	GATC	3 cut(s)	521, 1077, 1173
MboI	GATC	3 cut(s)	519, 1075, 1171
MfeI	CAATTG	1 cut(s)	1947
MhlI	GDGCHC	6 cut(s)	685, 716, 865, 1414, 1756, 1810
MluCI	AATT	8 cut(s)	88, 442, 491, 1551, 1640, 1761, 1947, 2250
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	2 cut(s)	1478, 2364
Mph1103I	ATGCAT	3 cut(s)	858, 1451, 1600
MroXI	GAANNNNTTC	3 cut(s)	1622, 1866, 2294
MseI	TTAA	4 cut(s)	792, 1086, 1115, 1986
MslI	CAYNNNNRTG	3 cut(s)	939, 1007, 1778
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	6 cut(s)	415, 487, 660, 752, 1920, 2033
MunI	CAATTG	1 cut(s)	1947
Mva1269I	GAATGC	1 cut(s)	1449
MvnI	CGCG	3 cut(s)	640, 1305, 2020
MwoI	GCNNNNNNNGC	7 cut(s)	534, 605, 637, 1070, 1311, 1710, 2138
NdeI	CATATG	1 cut(s)	1678
NdeII	GATC	3 cut(s)	519, 1075, 1171
NlaIV	GGNNCC	2 cut(s)	580, 750
NmuCI	GTSAC	3 cut(s)	1018, 1735, 2115
NsbI	TGCGCA	1 cut(s)	731
NsiI	ATGCAT	3 cut(s)	858, 1451, 1600
NspI	RCATGY	4 cut(s)	856, 917, 1701, 1930
OliI	CACNNNNGTG	1 cut(s)	1778
PagI	TCATGA	1 cut(s)	1584
PciI	ACATGT	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	1402
PcsI	WCGNNNNNNNCGW	3 cut(s)	474, 1367, 2337
PctI	GAATGC	1 cut(s)	1449
PdmI	GAANNNNTTC	3 cut(s)	1622, 1866, 2294
PfeI	GAWTC	7 cut(s)	266, 514, 561, 931, 1300, 2192, 2279
Pfl23II	CGTACG	1 cut(s)	1358
PflFI	GACNNNGTC	1 cut(s)	592
PkrI	GCNGC	9 cut(s)	396, 399, 578, 665, 1072, 1503, 1834, 1848, 1939
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Ppu21I	YACGTR	2 cut(s)	1358, 2332
PscI	ACATGT	1 cut(s)	913
PsiI	TTATAA	1 cut(s)	1271
Psp124BI	GAGCTC	2 cut(s)	685, 716
Psp1406I	AACGTT	1 cut(s)	2421
PspLI	CGTACG	1 cut(s)	1358
PspN4I	GGNNCC	2 cut(s)	580, 750
PspPI	GGNCC	3 cut(s)	497, 526, 578
PstI	CTGCAG	3 cut(s)	1075, 2224, 2289
PsyI	GACNNNGTC	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	7 cut(s)	371, 677, 1191, 1360, 1784, 2099, 2330
RsaNI	GTAC	7 cut(s)	370, 676, 1190, 1359, 1783, 2098, 2329
RseI	CAYNNNNRTG	3 cut(s)	939, 1007, 1778
Rsr2I	CGGWCCG	1 cut(s)	497
RsrII	CGGWCCG	1 cut(s)	497
SacI	GAGCTC	2 cut(s)	685, 716
SapI	GCTCTTC	1 cut(s)	1402
SaqAI	TTAA	4 cut(s)	792, 1086, 1115, 1986
SatI	GCNGC	9 cut(s)	395, 398, 577, 664, 1071, 1502, 1833, 1847, 1938
Sau3AI	GATC	3 cut(s)	519, 1075, 1171
Sau96I	GGNCC	3 cut(s)	497, 526, 578
SchI	GAGTC	1 cut(s)	650
SduI	GDGCHC	6 cut(s)	685, 716, 865, 1414, 1756, 1810
SfaNI	GCATC	6 cut(s)	865, 1422, 1436, 1607, 1833, 2039
SfcI	CTRYAG	3 cut(s)	1071, 2220, 2285
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	3 cut(s)	939, 1007, 1778
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	2372
Sse9I	AATT	8 cut(s)	88, 442, 491, 1551, 1640, 1761, 1947, 2250
SsiI	CCGC	9 cut(s)	329, 576, 608, 640, 663, 666, 767, 1435, 1501
SspI	AATATT	2 cut(s)	1138, 1527
SspMI	CTAG	7 cut(s)	804, 840, 1415, 1478, 1658, 2373, 2406
SstI	GAGCTC	2 cut(s)	685, 716
StyI	CCWWGG	2 cut(s)	1740, 1766
TaaI	ACNGT	7 cut(s)	1028, 1318, 1459, 2121, 2137, 2206, 2351
TaiI	ACGT	7 cut(s)	1360, 1364, 1895, 2117, 2334, 2346, 2424
TaqI	TCGA	5 cut(s)	408, 1174, 1626, 1810, 2234
TaqII	GACCGA	2 cut(s)	514, 675
TasI	AATT	8 cut(s)	88, 442, 491, 1551, 1640, 1761, 1947, 2250
TatI	WGTACW	2 cut(s)	369, 1782
TauI	GCSGC	3 cut(s)	579, 666, 1504
TfiI	GAWTC	7 cut(s)	266, 514, 561, 931, 1300, 2192, 2279
Tru1I	TTAA	4 cut(s)	792, 1086, 1115, 1986
Tru9I	TTAA	4 cut(s)	792, 1086, 1115, 1986
TscAI	CASTG	6 cut(s)	18, 544, 1085, 2124, 2234, 2356
TseFI	GTSAC	3 cut(s)	1018, 1735, 2115
TseI	GCWGC	6 cut(s)	394, 397, 1070, 1832, 1846, 1937
Tsp45I	GTSAC	3 cut(s)	1018, 1735, 2115
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	6 cut(s)	18, 544, 1085, 2124, 2234, 2356
Tth111I	GACNNNGTC	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	804
XapI	RAATTY	3 cut(s)	88, 442, 1761
XbaI	TCTAGA	1 cut(s)	803
XceI	RCATGY	4 cut(s)	856, 917, 1701, 1930
XmiI	GTMKAC	2 cut(s)	918, 2346
XmnI	GAANNNNTTC	3 cut(s)	1622, 1866, 2294
XspI	CTAG	7 cut(s)	804, 840, 1415, 1478, 1658, 2373, 2406
ZraI	GACGTC	1 cut(s)	2115
Zsp2I	ATGCAT	3 cut(s)	858, 1451, 1600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.