Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006005.1

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 453

Gene Structure 452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 452 bp

atggaggccatttcaatcgtagaggagcctcatgatgccatggagtttgaatctcatgaagctgcatatgattactacaaagcatatgccaagtctgtgggtttcggcactgctaaattgagcagtcgtcgatctagggcgtccaaagaattcattgatgccaaattttcatgcataagatatggaaacaagcagcagtccgatgatgccatcaatccccggccttcccccaaaattggttgcaaggcaagcatgcatgtgaagcgcaggcccaatggtaattggtatgtctatagtttcgtaaaggagcacaaccatgagcttttaccggctcaagcacatttctttcgcagccacagaaatgcagaccctcttaagaataacgatgttaggatgcgaagacggaagaatgtgaattcagtgtccagcttattcagtgcatatcaaaatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

151

Amino Acids

17.43

Weight (kDa)

9.66

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	24 - 110	1e-29	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	149, 164, 415
AcyI	GRCGYC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	15, 50
AluBI	AGCT	3 cut(s)	62, 322, 429
AluI	AGCT	3 cut(s)	62, 322, 429
Alw21I	GWGCWC	1 cut(s)	312
AoxI	GGCC	3 cut(s)	6, 221, 269
ApeKI	GCWGC	3 cut(s)	62, 193, 351
ApoI	RAATTY	3 cut(s)	149, 164, 415
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	49, 205, 363
BccI	CCATC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	292
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	3 cut(s)	63, 194, 352
BlsI	GCNGC	3 cut(s)	64, 195, 353
Bme1390I	CCNGG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	4 cut(s)	25, 148, 196, 384
BpiI	GAAGAC	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	39, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	39, 218
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	49, 205, 363
BshFI	GGCC	3 cut(s)	8, 223, 271
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	2 cut(s)	220, 329
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	3 cut(s)	8, 223, 271
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	39
BspANI	GGCC	3 cut(s)	8, 223, 271
BspHI	TCATGA	2 cut(s)	31, 55
BspLI	GGNNCC	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	39, 218
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	250, 254, 269
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 262
BstNSI	RCATGY	2 cut(s)	256, 260
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	49, 205, 363
BstV2I	GAAGAC	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	8, 223, 271
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 426, 442
Cac8I	GCNNGC	3 cut(s)	250, 254, 269
CciI	TCATGA	2 cut(s)	31, 55
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	270
CseI	GACGC	1 cut(s)	129
CviAII	CATG	7 cut(s)	32, 40, 56, 171, 253, 257, 317
CviJI	RGCY	9 cut(s)	8, 28, 62, 223, 271, 322, 332, 354, 429
CviKI_1	RGCY	9 cut(s)	8, 28, 62, 223, 271, 322, 332, 354, 429
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	39
EcoRI	GAATTC	2 cut(s)	149, 415
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	2 cut(s)	176, 258
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	7 cut(s)	35, 43, 59, 174, 256, 260, 320
FatI	CATG	7 cut(s)	31, 39, 55, 170, 252, 256, 316
FauNDI	CATATG	2 cut(s)	67, 85
Fnu4HI	GCNGC	3 cut(s)	63, 194, 352
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	63, 194, 352
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	63, 194, 352
HaeIII	GGCC	3 cut(s)	8, 223, 271
HapII	CCGG	2 cut(s)	220, 329
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	7 cut(s)	35, 43, 59, 174, 256, 260, 320
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	2 cut(s)	220, 329
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	32, 56
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	234
HpyCH4V	TGCA	6 cut(s)	65, 174, 243, 256, 365, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 262
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	7 cut(s)	35, 43, 59, 174, 256, 260, 320
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	25, 307
LpnPI	CCDG	4 cut(s)	233, 253, 342, 439
Lsp1109I	GCAGC	3 cut(s)	49, 205, 363
LweI	GCATC	4 cut(s)	25, 148, 196, 384
MaeI	CTAG	1 cut(s)	135
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	2 cut(s)	411, 418
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	6 cut(s)	116, 149, 164, 234, 280, 415
MnlI	CCTC	3 cut(s)	16, 39, 381
Mph1103I	ATGCAT	2 cut(s)	176, 258
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	3 cut(s)	257, 315, 360
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	2 cut(s)	220, 329
MspR9I	CCNGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	249, 262
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	2 cut(s)	67, 85
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	7 cut(s)	35, 43, 59, 174, 256, 260, 320
NlaIV	GGNNCC	1 cut(s)	27
NsiI	ATGCAT	2 cut(s)	176, 258
NspI	RCATGY	2 cut(s)	256, 260
PaeI	GCATGC	1 cut(s)	256
PagI	TCATGA	2 cut(s)	31, 55
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	64, 195, 353
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	270
RseI	CAYNNNNRTG	3 cut(s)	257, 315, 360
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	63, 194, 352
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	3 cut(s)	64, 324, 431
SfaNI	GCATC	4 cut(s)	25, 148, 196, 384
SfcI	CTRYAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	3 cut(s)	257, 315, 360
SmlI	CTYRAG	2 cut(s)	333, 374
SmoI	CTYRAG	2 cut(s)	333, 374
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	6 cut(s)	116, 149, 164, 234, 280, 415
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	130
TasI	AATT	6 cut(s)	116, 149, 164, 234, 280, 415
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	3 cut(s)	115, 426, 442
TseI	GCWGC	3 cut(s)	62, 193, 351
TspDTI	ATGAA	3 cut(s)	72, 142, 159
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	3 cut(s)	115, 426, 442
Vha464I	CTTAAG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	149, 164, 415
XceI	RCATGY	2 cut(s)	256, 260
XspI	CTAG	1 cut(s)	135
Zsp2I	ATGCAT	2 cut(s)	176, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.