Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006046.1

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Reverse (-)

16652 .. 21733

Gene Structure 5082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgcatcgccgattcctcggcaataccacagagctgccctacaacaatggcaaccgtacagccgattcctacataagcgagatgaatttcgacacaaacatggtcatcatcttggcggctctcttgtgtgcccttatatgcgctcttggcttgaactcaatagtgcgttgcgcgcttcgctgcagccacaggtttactcttgagaccccggagcaggctgcagcgcgtctcgcggccactgggctcaagaagagtcatttgaggcagattccggttgcggtttacggtgaagggattcatattccggcgaccgagtgtccgatctgtctcggagagtttgaggacggcgagaaggttagggtgctgccaaaatgtaaccacggattccatgtgaggtgcatagacacttggcttgtgtcacactcatcatgcccgaattgtcggcattcactgctcgagcaacaacaaccatcgaagaaaactagaactactagtcgtagtactaccagtactagttctgaagcgacagagaattcatcaccaacagccagtgagtccgaccaggaaggcagagtagttctggtgattgatgaagcaaggtttactgagccttcacctacactattgacacagacagagagagcgcgacgagggcctcatcttttgggttttggttatttgctcgacacagagagagagagatggagcgaagtaaacagaggaagaaaggagagaagaagaggccatcccttcaaaatgtccatcgctagggtggagtttggcattggaggcttaatcgtggacaccaaggtgttttattggccaagaaaggtcttttgctatggatttctggtctccattgttctcacctgtcatgactcagtagctgaccctgcagcactcaaatcaaattgcctaattgtacagctgattttcctgcaaagatgcattcttatgcttaatacggttgctaccttgaggagagatgctgctgctcaggagctgatgtgtgcctggaatgactttggtttcaatgacattctttgggtatacagtggccgacatggtgttcactattgggtttgtgatgagaaagctagaaggaacacagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

371

Amino Acids

41.82

Weight (kDa)

8.67

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	105 - 148	3.5e-15	Ring finger domain
zf-RING_11	PF17123	105 - 134	3.3e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	105 - 147	1.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	105 - 148	4.8e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	106 - 147	2.2e-06	Zinc finger, C3HC4 type (RING finger)
DNA_primase_S	PF01896	332 - 368	7.7e-07	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1050
AccII	CGCG	4 cut(s)	173, 226, 233, 646
AciI	CCGC	3 cut(s)	116, 233, 278
AcoI	YGGCCR	3 cut(s)	234, 821, 1057
AcsI	RAATTY	2 cut(s)	85, 532
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	4 cut(s)	58, 502, 511, 924
AfiI	CCNNNNNNNGG	2 cut(s)	214, 768
AgsI	TTSAA	3 cut(s)	154, 754, 1033
AhdI	GACNNNNNGTC	1 cut(s)	315
AhlI	ACTAGT	2 cut(s)	491, 512
AjnI	CCWGG	2 cut(s)	561, 1013
AleI	CACNNNNGTG	1 cut(s)	809
AluBI	AGCT	5 cut(s)	34, 887, 928, 1003, 1097
AluI	AGCT	5 cut(s)	34, 887, 928, 1003, 1097
Alw26I	GTCTC	4 cut(s)	197, 233, 332, 859
AlwNI	CAGNNNCTG	2 cut(s)	887, 1003
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	5 cut(s)	234, 653, 742, 821, 1057
ApeKI	GCWGC	9 cut(s)	34, 180, 183, 218, 221, 364, 896, 989, 992
ApoI	RAATTY	2 cut(s)	85, 532
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	5 cut(s)	143, 173, 175, 226, 646
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	5 cut(s)	299, 531, 595, 606, 859
AvaI	CYCGRG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	246
BbvI	GCAGC	9 cut(s)	21, 167, 195, 205, 233, 351, 908, 976, 979
BccI	CCATC	4 cut(s)	478, 696, 753, 770
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	563, 1015
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	4 cut(s)	197, 233, 332, 859
BcuI	ACTAGT	2 cut(s)	491, 512
BfaI	CTAG	5 cut(s)	483, 492, 513, 768, 1098
BfmI	CTRYAG	3 cut(s)	181, 219, 894
BmcAI	AGTACT	2 cut(s)	502, 511
Bme1390I	CCNGG	3 cut(s)	209, 563, 1015
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	653
BmrFI	CCNGG	3 cut(s)	209, 563, 1015
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	13, 935, 976
BmuI	ACTGGG	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	3 cut(s)	221, 230, 997
BpuMI	CCSGG	1 cut(s)	209
BsaI	GGTCTC	2 cut(s)	197, 859
BsaJI	CCNNGG	4 cut(s)	16, 207, 379, 807
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 768
Bse1I	ACTGG	3 cut(s)	244, 507, 549
BseBI	CCWGG	2 cut(s)	563, 1015
BseDI	CCNNGG	4 cut(s)	16, 207, 379, 807
BseGI	GGATG	1 cut(s)	745
BseLI	CCNNNNNNNGG	2 cut(s)	214, 768
BseMII	CTCAG	3 cut(s)	597, 894, 1010
BseNI	ACTGG	3 cut(s)	244, 507, 549
BsePI	GCGCGC	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	994
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	9 cut(s)	21, 167, 195, 205, 233, 351, 908, 976, 979
Bsh1236I	CGCG	4 cut(s)	173, 226, 233, 646
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	236, 655, 744, 823, 1059
BsiEI	CGRYCG	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	3 cut(s)	209, 272, 305
BslI	CCNNNNNNNGG	2 cut(s)	214, 768
BsmAI	GTCTC	4 cut(s)	197, 233, 332, 859
BsmBI	CGTCTC	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	445, 948
BsnI	GGCC	5 cut(s)	236, 655, 744, 823, 1059
Bso31I	GGTCTC	2 cut(s)	197, 859
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	133, 246
Bsp1407I	TGTACA	1 cut(s)	922
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	3 cut(s)	116, 233, 278
BspANI	GGCC	5 cut(s)	236, 655, 744, 823, 1059
BspCNI	CTCAG	3 cut(s)	598, 893, 1009
BspFNI	CGCG	4 cut(s)	173, 226, 233, 646
BspHI	TCATGA	1 cut(s)	874
BspMAI	CTGCAG	3 cut(s)	185, 223, 898
BspTNI	GGTCTC	2 cut(s)	197, 859
BsrGI	TGTACA	1 cut(s)	922
BsrI	ACTGG	3 cut(s)	244, 507, 549
BssECI	CCNNGG	4 cut(s)	16, 207, 379, 807
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	1 cut(s)	321
BssNAI	GTATAC	1 cut(s)	1051
BssT1I	CCWWGG	1 cut(s)	807
Bst1107I	GTATAC	1 cut(s)	1051
Bst2UI	CCWGG	2 cut(s)	563, 1015
Bst4CI	ACNGT	5 cut(s)	56, 287, 967, 1055, 1111
Bst6I	CTCTTC	2 cut(s)	245, 733
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	922
BstC8I	GCNNGC	2 cut(s)	173, 216
BstDEI	CTNAG	3 cut(s)	606, 880, 996
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	4 cut(s)	173, 226, 233, 646
BstHHI	GCGC	5 cut(s)	143, 173, 175, 226, 646
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	4 cut(s)	197, 233, 332, 859
BstMBI	GATC	1 cut(s)	321
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	8 cut(s)	147, 172, 177, 230, 451, 652, 789, 893
BstNI	CCWGG	2 cut(s)	563, 1015
BstSCI	CCNGG	3 cut(s)	207, 561, 1013
BstSFI	CTRYAG	3 cut(s)	181, 219, 894
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	4 cut(s)	173, 226, 233, 646
BstV1I	GCAGC	9 cut(s)	21, 167, 195, 205, 233, 351, 908, 976, 979
BstZ17I	GTATAC	1 cut(s)	1051
BsuRI	GGCC	5 cut(s)	236, 655, 744, 823, 1059
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	748
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	5 cut(s)	237, 449, 556, 1060, 1116
Cac8I	GCNNGC	2 cut(s)	173, 216
CaiI	CAGNNNCTG	2 cut(s)	887, 1003
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	5 cut(s)	143, 173, 175, 226, 646
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	4 cut(s)	57, 501, 510, 923
CviAII	CATG	5 cut(s)	100, 389, 429, 875, 1064
CviQI	GTAC	4 cut(s)	57, 501, 510, 923
DdeI	CTNAG	3 cut(s)	606, 880, 996
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	3 cut(s)	234, 821, 1057
Eam1104I	CTCTTC	2 cut(s)	245, 733
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EarI	CTCTTC	2 cut(s)	245, 733
Eco130I	CCWWGG	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	2 cut(s)	197, 859
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	561, 1013
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	2 cut(s)	6, 950
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	807
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	5 cut(s)	103, 392, 432, 878, 1067
FatI	CATG	5 cut(s)	99, 388, 428, 874, 1063
FblI	GTMKAC	1 cut(s)	1050
FokI	GGATG	1 cut(s)	732
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	5 cut(s)	483, 492, 513, 768, 1098
GlaI	GCGC	5 cut(s)	142, 172, 174, 225, 645
HaeIII	GGCC	5 cut(s)	236, 655, 744, 823, 1059
HapII	CCGG	3 cut(s)	209, 272, 305
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	5 cut(s)	143, 173, 175, 226, 646
Hin1II	CATG	5 cut(s)	103, 392, 432, 878, 1067
Hin6I	GCGC	5 cut(s)	141, 171, 173, 224, 644
HinP1I	GCGC	5 cut(s)	141, 171, 173, 224, 644
HinfI	GANTC	8 cut(s)	12, 65, 253, 268, 295, 384, 554, 878
HpaII	CCGG	3 cut(s)	209, 272, 305
HphI	GGTGA	5 cut(s)	299, 531, 595, 606, 859
Hpy166II	GTNNAC	7 cut(s)	195, 283, 603, 715, 802, 1051, 1072
Hpy188I	TCNGA	4 cut(s)	321, 332, 520, 559
Hpy188III	TCNNGA	4 cut(s)	200, 247, 875, 998
Hpy8I	GTNNAC	7 cut(s)	195, 283, 603, 715, 802, 1051, 1072
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	6 cut(s)	284, 346, 560, 621, 760, 1095
HpyCH4III	ACNGT	5 cut(s)	56, 287, 967, 1055, 1111
HpyCH4V	TGCA	7 cut(s)	4, 183, 221, 399, 896, 940, 948
HpyF10VI	GCNNNNNNNGC	8 cut(s)	147, 172, 177, 230, 451, 652, 789, 893
HpyF3I	CTNAG	3 cut(s)	606, 880, 996
Hsp92II	CATG	5 cut(s)	103, 392, 432, 878, 1067
HspAI	GCGC	5 cut(s)	141, 171, 173, 224, 644
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	211, 705, 1000
Lsp1109I	GCAGC	9 cut(s)	21, 167, 195, 205, 233, 351, 908, 976, 979
LweI	GCATC	3 cut(s)	13, 935, 976
MaeI	CTAG	5 cut(s)	483, 492, 513, 768, 1098
MaeIII	GTNAC	2 cut(s)	374, 417
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	5 cut(s)	262, 487, 735, 747, 750
MhlI	GDGCHC	2 cut(s)	133, 246
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	5 cut(s)	85, 436, 532, 910, 918
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	3 cut(s)	262, 563, 872
MmeI	TCCRAC	1 cut(s)	582
Mox20I	TGGCCA	1 cut(s)	823
Mph1103I	ATGCAT	2 cut(s)	6, 950
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	2 cut(s)	794, 960
MslI	CAYNNNNRTG	3 cut(s)	98, 809, 953
Msp20I	TGGCCA	1 cut(s)	823
MspA1I	CMGCKG	1 cut(s)	928
MspI	CCGG	3 cut(s)	209, 272, 305
MspR9I	CCNGG	3 cut(s)	209, 563, 1015
Mva1269I	GAATGC	2 cut(s)	445, 948
MvaI	CCWGG	2 cut(s)	563, 1015
MvnI	CGCG	4 cut(s)	173, 226, 233, 646
MwoI	GCNNNNNNNGC	8 cut(s)	147, 172, 177, 230, 451, 652, 789, 893
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	5 cut(s)	103, 392, 432, 878, 1067
NmuCI	GTSAC	1 cut(s)	417
NsiI	ATGCAT	2 cut(s)	6, 950
OliI	CACNNNNGTG	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	874
PauI	GCGCGC	1 cut(s)	171
PctI	GAATGC	2 cut(s)	445, 948
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	5 cut(s)	12, 65, 268, 295, 384
PleI	GAGTC	3 cut(s)	261, 562, 872
PpsI	GAGTC	3 cut(s)	261, 562, 872
Psp6I	CCWGG	2 cut(s)	561, 1013
PspGI	CCWGG	2 cut(s)	561, 1013
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	455
PstI	CTGCAG	3 cut(s)	185, 223, 898
PstNI	CAGNNNCTG	2 cut(s)	887, 1003
PteI	GCGCGC	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	928
RsaI	GTAC	4 cut(s)	58, 502, 511, 924
RsaNI	GTAC	4 cut(s)	57, 501, 510, 923
RseI	CAYNNNNRTG	3 cut(s)	98, 809, 953
SaqAI	TTAA	2 cut(s)	794, 960
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	653
ScaI	AGTACT	2 cut(s)	502, 511
SchI	GAGTC	3 cut(s)	262, 563, 872
ScrFI	CCNGG	3 cut(s)	209, 563, 1015
SduI	GDGCHC	2 cut(s)	133, 246
SfaNI	GCATC	3 cut(s)	13, 935, 976
SfcI	CTRYAG	3 cut(s)	181, 219, 894
Sfr274I	CTCGAG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	3 cut(s)	98, 809, 953
SmlI	CTYRAG	4 cut(s)	200, 245, 455, 976
SmoI	CTYRAG	4 cut(s)	200, 245, 455, 976
SpeI	ACTAGT	2 cut(s)	491, 512
Sse9I	AATT	5 cut(s)	85, 436, 532, 910, 918
SsiI	CCGC	3 cut(s)	116, 233, 278
SspMI	CTAG	5 cut(s)	483, 492, 513, 768, 1098
StyD4I	CCNGG	3 cut(s)	207, 561, 1013
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	5 cut(s)	56, 287, 967, 1055, 1111
TaqI	TCGA	4 cut(s)	90, 456, 473, 684
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	85, 436, 532, 910, 918
TatI	WGTACW	3 cut(s)	500, 509, 922
TauI	GCSGC	2 cut(s)	119, 236
TfiI	GAWTC	5 cut(s)	12, 65, 268, 295, 384
Tru1I	TTAA	2 cut(s)	794, 960
Tru9I	TTAA	2 cut(s)	794, 960
TscAI	CASTG	5 cut(s)	244, 456, 556, 1060, 1116
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	9 cut(s)	34, 180, 183, 218, 221, 364, 896, 989, 992
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	4 cut(s)	98, 287, 525, 606
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	5 cut(s)	244, 456, 556, 1060, 1116
XapI	RAATTY	2 cut(s)	85, 532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	1050
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	5 cut(s)	483, 492, 513, 768, 1098
ZrmI	AGTACT	2 cut(s)	502, 511
Zsp2I	ATGCAT	2 cut(s)	6, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.