Rmu_sc0006214.1_g000004

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006214.1
OG0004076
Physical Location & Seq
Forward (+)
12738 .. 14353
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
atggaagcagccgccacagcgagcgtgttccaatcatcaattgcggcctttaggccttcgaattctgtcggaagatcccgtcttttgatggccagcggtcccaagtttatgcctttgggacatttgggttccaaatctcactcctcaatcaagcatcagttttcaaattcagctggaagaatgggttttggaatacggaggaggtgcttggtagttagggcgtcgtattcatctccggactccgctggttctagtgctccaattgctccacttcagctggagtcgccgattggacagttcctatctcagatgatgataagccaccctcaccttgtgcccaccgcagttgagcagcagctcgaacagctccaaactgaccgcgatgctgagcagaagaaggaagaggcttccgcttcggacactgatcttgtgttatacaggagaattgcggaggttaaagctaatgaaaggaagaaggctcttgaagagatattatatgcgttagtggtgcagaaattcatggatgccaatgtttctttggtgccttccattgcccctgctgcttcagacccttctggccgagttgatgcatggccgagtcaggatgacaagctcgagcgactacattctcctgaagcctacgagatgatccagaaccacctgtctctcatcctaggaaatcggttggacgactcgacctctttagcacagataagcaagctcagagtggggcaggtttatgcagcatctgtaatgtatggatacttcctcaagcgggttgatcagaggtttcagcttgagaagacaatgaagatccttccaggttcgctgggtggagaagacagtgatattcaaaaagccgtgggagaggacaagaggcctggtggtgtggatgattctttgcaagcagcagcttcccatcctgaagtatcttcttggtctgggggcatgggtcctggagcttatggtaatgtgatcaaaccttcccgcttgagaacctatgtgatgtctgtcgatggagagacccttcaaagatacgcaacaatcagatcgagagaggctgttagcatcattgaaaagcacactgaggcgttgtttggaaaacccgatattgttataacacctcagggaactgttgattcttccaatgatgaacacatcaaaattagctttggtggtttgaagagacttgttttggaagctgtgactttcggttctttcctctgggatgttgagagctatgtggattccaggtaccattttgttacgaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

424

Amino Acids

46.39

Weight (kDa)

6.61

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 145 - 270 5.2e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1118
Acc36I ACCTGC 1 cut(s) 724
Acc65I GGTACC 1 cut(s) 1254
AccB1I GGYRCC 2 cut(s) 541, 1254
AccII CGCG 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 235
AclWI GGATC 3 cut(s) 69, 643, 808
AcoI YGGCCR 3 cut(s) 90, 577, 593
AcsI RAATTY 3 cut(s) 61, 166, 515
AcuI CTGAAG 4 cut(s) 257, 549, 654, 945
AcyI GRCGYC 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 1256
AfiI CCNNNNNNNGG 1 cut(s) 775
AgsI TTSAA 6 cut(s) 165, 485, 854, 1031, 1076, 1183
AjnI CCWGG 4 cut(s) 820, 880, 955, 1250
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 3 cut(s) 669, 1016, 1180
AlwI GGATC 3 cut(s) 69, 643, 808
AlwNI CAGNNNCTG 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 614
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 6 cut(s) 45, 53, 90, 577, 593, 878
ApeKI GCWGC 7 cut(s) 8, 352, 355, 560, 743, 908, 911
ApoI RAATTY 3 cut(s) 61, 166, 515
Asp718I GGTACC 1 cut(s) 1254
AspA2I CCTAGG 1 cut(s) 673
AspS9I GGNCC 2 cut(s) 98, 953
AsuHPI GGTGA 1 cut(s) 320
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 2 cut(s) 98, 953
AvrII CCTAGG 1 cut(s) 673
AxyI CCTNAGG 1 cut(s) 1125
BaeGI GKGCMC 1 cut(s) 339
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 2 cut(s) 541, 1254
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
BbsI GAAGAC 2 cut(s) 809, 846
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 7 cut(s) 20, 364, 367, 547, 755, 920, 923
BccI CCATC 3 cut(s) 82, 927, 1010
BceAI ACGGC 1 cut(s) 845
BciT130I CCWGG 4 cut(s) 822, 882, 957, 1252
BciVI GTATCC 1 cut(s) 755
BclI TGATCA 2 cut(s) 781, 975
BcoDI GTCTC 3 cut(s) 669, 1016, 1180
BfaI CTAG 2 cut(s) 252, 674
BfuAI ACCTGC 1 cut(s) 724
BfuI GTATCC 1 cut(s) 755
BisI GCNGC 9 cut(s) 9, 12, 45, 353, 356, 561, 744, 909, 912
BlnI CCTAGG 1 cut(s) 673
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 9 cut(s) 10, 13, 46, 354, 357, 562, 745, 910, 913
Bme1390I CCNGG 4 cut(s) 822, 882, 957, 1252
Bme18I GGWCC 2 cut(s) 98, 953
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 98, 953
BmiI GGNNCC 5 cut(s) 100, 130, 543, 954, 1256
BmrFI CCNGG 4 cut(s) 822, 882, 957, 1252
BmsI GCATC 6 cut(s) 163, 373, 514, 577, 755, 1077
BpiI GAAGAC 2 cut(s) 809, 846
BpmI CTGGAG 2 cut(s) 299, 978
Bpu1102I GCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 3 cut(s) 755, 818, 1012
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 673, 861
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 775
Bse21I CCTNAGG 1 cut(s) 1125
Bse3DI GCAATG 1 cut(s) 549
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 4 cut(s) 822, 882, 957, 1252
BseDI CCNNGG 2 cut(s) 673, 861
BseGI GGATG 6 cut(s) 529, 610, 669, 898, 919, 1234
BseLI CCNNNNNNNGG 1 cut(s) 775
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 5 cut(s) 320, 378, 736, 1077, 1139
BseRI GAGGAG 2 cut(s) 133, 214
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 7 cut(s) 20, 364, 367, 547, 755, 920, 923
BseYI CCCAGC 1 cut(s) 829
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 6 cut(s) 47, 55, 92, 579, 595, 880
BshNI GGYRCC 2 cut(s) 541, 1254
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 2 cut(s) 84, 132
BslI CCNNNNNNNGG 1 cut(s) 775
BsmAI GTCTC 3 cut(s) 669, 1016, 1180
BsmFI GGGAC 2 cut(s) 84, 132
BsnI GGCC 6 cut(s) 47, 55, 92, 579, 595, 880
Bso31I GGTCTC 1 cut(s) 1016
BsoBI CYCGRG 1 cut(s) 614
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 259, 339
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
Bsp1720I GCTNAGC 1 cut(s) 387
BspANI GGCC 6 cut(s) 47, 55, 92, 579, 595, 880
BspCNI CTCAG 5 cut(s) 319, 379, 735, 1078, 1138
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 5 cut(s) 100, 130, 543, 954, 1256
BspMI ACCTGC 1 cut(s) 724
BspPI GGATC 3 cut(s) 69, 643, 808
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 541, 1254
BspTNI GGTCTC 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 673, 861
BssMI GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 673
Bst2UI CCWGG 4 cut(s) 822, 882, 957, 1252
Bst4CI ACNGT 3 cut(s) 297, 845, 1135
Bst6I CTCTTC 3 cut(s) 396, 480, 1178
BstACI GRCGYC 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 22, 94, 719, 906
BstDEI CTNAG 5 cut(s) 306, 387, 722, 1086, 1125
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 6 cut(s) 529, 610, 669, 898, 919, 1234
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 7 cut(s) 77, 427, 651, 784, 816, 978, 1052
BstMAI GTCTC 3 cut(s) 669, 1016, 1180
BstMBI GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
BstMWI GCNNNNNNNGC 5 cut(s) 17, 263, 283, 364, 560
BstNI CCWGG 4 cut(s) 822, 882, 957, 1252
BstSCI CCNGG 4 cut(s) 820, 880, 955, 1250
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 7 cut(s) 20, 364, 367, 547, 755, 920, 923
BstV2I GAAGAC 2 cut(s) 809, 846
BstX2I RGATCY 2 cut(s) 74, 813
BstYI RGATCY 2 cut(s) 74, 813
Bsu36I CCTNAGG 1 cut(s) 1125
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 6 cut(s) 47, 55, 92, 579, 595, 880
BtgI CCRYGG 1 cut(s) 861
BtgZI GCGATG 1 cut(s) 396
BtsCI GGATG 6 cut(s) 529, 610, 669, 898, 919, 1234
BtsIMutI CAGTG 3 cut(s) 420, 850, 1083
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 4 cut(s) 22, 94, 719, 906
CaiI CAGNNNCTG 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 98, 953
CseI GACGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 1255
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 3 cut(s) 520, 591, 949
CviQI GTAC 1 cut(s) 1255
DdeI CTNAG 5 cut(s) 306, 387, 722, 1086, 1125
DpnI GATC 7 cut(s) 76, 426, 650, 783, 815, 977, 1051
DpnII GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
DraIII CACNNNGTG 1 cut(s) 334
EaeI YGGCCR 3 cut(s) 90, 577, 593
Eam1104I CTCTTC 3 cut(s) 396, 480, 1178
EarI CTCTTC 3 cut(s) 396, 480, 1178
Eco130I CCWWGG 1 cut(s) 673
Eco147I AGGCCT 2 cut(s) 55, 880
Eco31I GGTCTC 1 cut(s) 1016
Eco47I GGWCC 2 cut(s) 98, 953
Eco57I CTGAAG 4 cut(s) 257, 549, 654, 945
Eco81I CCTNAGG 1 cut(s) 1125
Eco88I CYCGRG 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 953
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 4 cut(s) 820, 880, 955, 1250
EcoT14I CCWWGG 1 cut(s) 673
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 3 cut(s) 523, 594, 952
FaqI GGGAC 2 cut(s) 84, 132
FatI CATG 3 cut(s) 519, 590, 948
FauI CCCGC 2 cut(s) 768, 995
FbaI TGATCA 2 cut(s) 781, 975
Fnu4HI GCNGC 9 cut(s) 9, 12, 45, 353, 356, 561, 744, 909, 912
FokI GGATG 6 cut(s) 536, 617, 656, 905, 906, 1241
Fsp4HI GCNGC 9 cut(s) 9, 12, 45, 353, 356, 561, 744, 909, 912
FspBI CTAG 2 cut(s) 252, 674
GluI GCNGC 9 cut(s) 9, 12, 45, 353, 356, 561, 744, 909, 912
GsaI CCCAGC 1 cut(s) 833
GsuI CTGGAG 2 cut(s) 299, 978
HaeIII GGCC 6 cut(s) 47, 55, 92, 579, 595, 880
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 3 cut(s) 523, 594, 952
HinfI GANTC 7 cut(s) 239, 281, 598, 692, 896, 1139, 1247
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 7 cut(s) 71, 309, 418, 568, 725, 786, 1049
Hpy188III TCNNGA 7 cut(s) 236, 482, 602, 632, 652, 923, 1053
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 8 cut(s) 66, 391, 469, 555, 582, 827, 993, 1037
HpyCH4III ACNGT 3 cut(s) 297, 845, 1135
HpyCH4V TGCA 4 cut(s) 511, 590, 743, 904
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 263, 283, 364, 560
HpyF3I CTNAG 5 cut(s) 306, 387, 722, 1086, 1125
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 3 cut(s) 523, 594, 952
Kpn2I TCCGGA 1 cut(s) 235
KpnI GGTACC 1 cut(s) 1258
Ksp22I TGATCA 2 cut(s) 781, 975
Kzo9I GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
LmnI GCTCC 4 cut(s) 262, 271, 372, 959
Lsp1109I GCAGC 7 cut(s) 20, 364, 367, 547, 755, 920, 923
LweI GCATC 6 cut(s) 163, 373, 514, 577, 755, 1077
MaeI CTAG 2 cut(s) 252, 674
MaeIII GTNAC 2 cut(s) 1204, 1264
MalI GATC 7 cut(s) 76, 426, 650, 783, 815, 977, 1051
MboI GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
MfeI CAATTG 2 cut(s) 39, 261
MflI RGATCY 2 cut(s) 74, 813
MhlI GDGCHC 2 cut(s) 259, 339
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 7 cut(s) 39, 61, 166, 261, 444, 515, 1164
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 4 cut(s) 233, 290, 607, 686
MmeI TCCRAC 2 cut(s) 49, 666
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 592
MroI TCCGGA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 4 cut(s) 96, 173, 245, 277
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 4 cut(s) 822, 882, 957, 1252
MunI CAATTG 2 cut(s) 39, 261
MvaI CCWGG 4 cut(s) 822, 882, 957, 1252
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 5 cut(s) 17, 263, 283, 364, 560
NdeII GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
NlaIII CATG 3 cut(s) 523, 594, 952
NlaIV GGNNCC 5 cut(s) 100, 130, 543, 954, 1256
NmeAIII GCCGAG 2 cut(s) 605, 621
NmuCI GTSAC 1 cut(s) 1204
NsiI ATGCAT 1 cut(s) 592
NspV TTCGAA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 614
PceI AGGCCT 2 cut(s) 55, 880
PfeI GAWTC 3 cut(s) 896, 1139, 1247
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 9 cut(s) 10, 13, 46, 354, 357, 562, 745, 910, 913
PleI GAGTC 4 cut(s) 233, 289, 606, 686
PpsI GAGTC 4 cut(s) 233, 289, 606, 686
PpuMI RGGWCCY 1 cut(s) 953
PsiI TTATAA 1 cut(s) 1118
Psp5II RGGWCCY 1 cut(s) 953
Psp6I CCWGG 4 cut(s) 820, 880, 955, 1250
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 4 cut(s) 820, 880, 955, 1250
PspN4I GGNNCC 5 cut(s) 100, 130, 543, 954, 1256
PspPI GGNCC 2 cut(s) 98, 953
PspPPI RGGWCCY 1 cut(s) 953
PspXI VCTCGAGB 1 cut(s) 614
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 2 cut(s) 74, 813
PvuII CAGCTG 2 cut(s) 173, 277
RsaI GTAC 1 cut(s) 1256
RsaNI GTAC 1 cut(s) 1255
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 9 cut(s) 9, 12, 45, 353, 356, 561, 744, 909, 912
Sau3AI GATC 7 cut(s) 74, 424, 648, 781, 813, 975, 1049
Sau96I GGNCC 2 cut(s) 98, 953
SchI GAGTC 4 cut(s) 233, 290, 607, 686
ScrFI CCNGG 4 cut(s) 822, 882, 957, 1252
SduI GDGCHC 2 cut(s) 259, 339
SfaNI GCATC 6 cut(s) 163, 373, 514, 577, 755, 1077
Sfr274I CTCGAG 1 cut(s) 614
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 2 cut(s) 98, 953
SlaI CTCGAG 1 cut(s) 614
SmlI CTYRAG 4 cut(s) 614, 770, 797, 991
SmoI CTYRAG 4 cut(s) 614, 770, 797, 991
Sse9I AATT 7 cut(s) 39, 61, 166, 261, 444, 515, 1164
SseBI AGGCCT 2 cut(s) 55, 880
SspMI CTAG 2 cut(s) 252, 674
StuI AGGCCT 2 cut(s) 55, 880
StyD4I CCNGG 4 cut(s) 820, 880, 955, 1250
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 3 cut(s) 297, 845, 1135
TaqI TCGA 6 cut(s) 59, 360, 615, 695, 1014, 1052
TasI AATT 7 cut(s) 39, 61, 166, 261, 444, 515, 1164
TauI GCSGC 2 cut(s) 14, 47
TfiI GAWTC 3 cut(s) 896, 1139, 1247
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 3 cut(s) 427, 850, 1090
TseFI GTSAC 1 cut(s) 1204
TseI GCWGC 7 cut(s) 8, 352, 355, 560, 743, 908, 911
Tsp45I GTSAC 1 cut(s) 1204
TspDTI ATGAA 5 cut(s) 219, 480, 508, 824, 1167
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 3 cut(s) 427, 850, 1090
VpaK11BI GGWCC 2 cut(s) 98, 953
XapI RAATTY 3 cut(s) 61, 166, 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 614
XmaJI CCTAGG 1 cut(s) 673
XspI CTAG 2 cut(s) 252, 674
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.