Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006835.1

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Reverse (-)

28186 .. 29613

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgattttgaactggattttgattttgagttttcttgcaggtataaagaaccgtaagaaagacaagattgcatatgatgagtccagtgaaacttggaaacgtcgctatggatatgatcatgcaaatgatgaggataatgtgcctatcattgaggcaaagttgactgatgtgccaggggaggatccctttgctaaaagacgagaagataaaaagaaacgtgttgagaagcaagacaaaaacaggttgcagaacttgaagcaagctgctaaagttggtgctttgccaagtcatgttcaactagctgcgacaaggttgcctataacaggaacccaggccgcaacccaaaaggttactaaagatgaacttggtgatgtagctggaattgcagcaactgcaacagccagtggtggaaaatttgacaagaagttgcccggtgaaaaacctggtaaacataaaggaaagtatcgcaagtttttaccagttataggaggaaaagggatacacacgcaagagcaggagcaaaccgataaaattctgaacaagctaatctctaagaactcccatgagatgctcaatgttaacaaggctgttaacatgtataatgtgaagaaagataagaagcgaaacaacagaccggagaagtcttcaggaacccctggccagttgaaaccaaggaagaaccttcagaagaagccatataacaagggctcttcaaagtcatttgacaagggatctaaaaagccatttgacaagggatctaaaaggccatttaacaagggatcttcgaacaaaggcagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

267

Amino Acids

29.9

Weight (kDa)

10.16

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	14 - 85	5.2e-18	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	5 cut(s)	176, 189, 739, 763, 787
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	2 cut(s)	413, 531
AcuI	CTGAAG	2 cut(s)	630, 668
AfiI	CCNNNNNNNGG	2 cut(s)	323, 485
AflIII	ACRYGT	2 cut(s)	217, 594
AgsI	TTSAA	5 cut(s)	10, 256, 296, 667, 714
AjnI	CCWGG	4 cut(s)	172, 330, 442, 655
AluBI	AGCT	4 cut(s)	263, 302, 377, 544
AluI	AGCT	4 cut(s)	263, 302, 377, 544
AlwI	GGATC	5 cut(s)	176, 189, 739, 763, 787
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	3 cut(s)	333, 658, 764
ApeKI	GCWGC	3 cut(s)	263, 302, 386
ApoI	RAATTY	2 cut(s)	413, 531
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	380, 446
AsuII	TTCGAA	1 cut(s)	785
BalI	TGGCCA	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	250, 289, 398
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	4 cut(s)	174, 332, 444, 657
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	432
BfaI	CTAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	4 cut(s)	264, 303, 336, 387
BlsI	GCNGC	4 cut(s)	265, 304, 337, 388
Bme1390I	CCNGG	5 cut(s)	174, 332, 432, 444, 657
BmiI	GGNNCC	3 cut(s)	183, 328, 652
BmrFI	CCNGG	5 cut(s)	174, 332, 432, 444, 657
BmsI	GCATC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	173, 330, 655, 671
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 485
Bse1I	ACTGG	5 cut(s)	17, 84, 402, 479, 661
BseBI	CCWGG	4 cut(s)	174, 332, 444, 657
BseDI	CCNNGG	4 cut(s)	173, 330, 655, 671
BseLI	CCNNNNNNNGG	2 cut(s)	323, 485
BseNI	ACTGG	5 cut(s)	17, 84, 402, 479, 661
BseXI	GCAGC	3 cut(s)	250, 289, 398
BshFI	GGCC	3 cut(s)	335, 660, 766
BsiSI	CCGG	2 cut(s)	432, 635
BslI	CCNNNNNNNGG	2 cut(s)	323, 485
BsnI	GGCC	3 cut(s)	335, 660, 766
Bsp119I	TTCGAA	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	5 cut(s)	115, 181, 731, 755, 779
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	3 cut(s)	335, 660, 766
BspLI	GGNNCC	3 cut(s)	183, 328, 652
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	5 cut(s)	176, 189, 739, 763, 787
BspQI	GCTCTTC	1 cut(s)	715
BspT104I	TTCGAA	1 cut(s)	785
BsrI	ACTGG	5 cut(s)	17, 84, 402, 479, 661
BssECI	CCNNGG	4 cut(s)	173, 330, 655, 671
BssMI	GATC	5 cut(s)	115, 181, 731, 755, 779
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	4 cut(s)	174, 332, 444, 657
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	785
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	552
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstKTI	GATC	5 cut(s)	118, 184, 734, 758, 782
BstMBI	GATC	5 cut(s)	115, 181, 731, 755, 779
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 392
BstNI	CCWGG	4 cut(s)	174, 332, 444, 657
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	5 cut(s)	172, 330, 430, 442, 655
BstV1I	GCAGC	3 cut(s)	250, 289, 398
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	4 cut(s)	181, 731, 755, 779
BstYI	RGATCY	4 cut(s)	181, 731, 755, 779
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	335, 660, 766
BtsIMutI	CAGTG	2 cut(s)	91, 409
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	392
CsiI	ACCWGGT	1 cut(s)	442
CviAII	CATG	4 cut(s)	119, 290, 563, 595
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	5 cut(s)	117, 183, 733, 757, 781
DpnII	GATC	5 cut(s)	115, 181, 731, 755, 779
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	715
EarI	CTCTTC	1 cut(s)	715
Eco130I	CCWWGG	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	630, 668
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoRII	CCWGG	4 cut(s)	172, 330, 442, 655
EcoT14I	CCWWGG	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	4 cut(s)	122, 293, 566, 598
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	4 cut(s)	118, 289, 562, 594
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	264, 303, 336, 387
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	4 cut(s)	264, 303, 336, 387
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	4 cut(s)	264, 303, 336, 387
HaeIII	GGCC	3 cut(s)	335, 660, 766
HapII	CCGG	2 cut(s)	432, 635
Hin1II	CATG	4 cut(s)	122, 293, 566, 598
HincII	GTYRAC	3 cut(s)	162, 580, 592
HindII	GTYRAC	3 cut(s)	162, 580, 592
HinfI	GANTC	1 cut(s)	80
HpaI	GTTAAC	2 cut(s)	580, 592
HpaII	CCGG	2 cut(s)	432, 635
HphI	GGTGA	2 cut(s)	380, 446
Hpy166II	GTNNAC	4 cut(s)	162, 449, 580, 592
Hpy188I	TCNGA	2 cut(s)	537, 687
Hpy188III	TCNNGA	1 cut(s)	648
Hpy8I	GTNNAC	4 cut(s)	162, 449, 580, 592
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	100, 217
HpyCH4V	TGCA	6 cut(s)	38, 71, 122, 247, 386, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 392
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	100, 217
Hsp92II	CATG	4 cut(s)	122, 293, 566, 598
Ksp22I	TGATCA	1 cut(s)	115
KspAI	GTTAAC	2 cut(s)	580, 592
Kzo9I	GATC	5 cut(s)	115, 181, 731, 755, 779
LguI	GCTCTTC	1 cut(s)	715
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	250, 289, 398
LweI	GCATC	1 cut(s)	558
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	100, 217
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	117, 183, 733, 757, 781
MboI	GATC	5 cut(s)	115, 181, 731, 755, 779
MboII	GAAGA	7 cut(s)	215, 619, 636, 688, 700, 702, 774
MflI	RGATCY	4 cut(s)	181, 731, 755, 779
MhlI	GDGCHC	1 cut(s)	710
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	381, 413, 531
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	124, 145, 172, 482
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	3 cut(s)	579, 591, 771
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	660
MspI	CCGG	2 cut(s)	432, 635
MspR9I	CCNGG	5 cut(s)	174, 332, 432, 444, 657
MvaI	CCWGG	4 cut(s)	174, 332, 444, 657
MwoI	GCNNNNNNNGC	2 cut(s)	383, 392
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	5 cut(s)	115, 181, 731, 755, 779
NlaIII	CATG	4 cut(s)	122, 293, 566, 598
NlaIV	GGNNCC	3 cut(s)	183, 328, 652
NspI	RCATGY	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	785
PciI	ACATGT	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	715
PkrI	GCNGC	4 cut(s)	265, 304, 337, 388
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	594
Psp6I	CCWGG	4 cut(s)	172, 330, 442, 655
PspGI	CCWGG	4 cut(s)	172, 330, 442, 655
PspN4I	GGNNCC	3 cut(s)	183, 328, 652
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	4 cut(s)	181, 731, 755, 779
RseI	CAYNNNNRTG	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	715
SaqAI	TTAA	3 cut(s)	579, 591, 771
SatI	GCNGC	4 cut(s)	264, 303, 336, 387
Sau3AI	GATC	5 cut(s)	115, 181, 731, 755, 779
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	5 cut(s)	174, 332, 432, 444, 657
SduI	GDGCHC	1 cut(s)	710
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	381, 413, 531
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	5 cut(s)	172, 330, 430, 442, 655
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	2 cut(s)	103, 220
TaqI	TCGA	1 cut(s)	785
TasI	AATT	3 cut(s)	381, 413, 531
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	3 cut(s)	579, 591, 771
Tru9I	TTAA	3 cut(s)	579, 591, 771
TscAI	CASTG	2 cut(s)	91, 409
TseI	GCWGC	3 cut(s)	263, 302, 386
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	91, 409
XagI	CCTNNNNNAGG	1 cut(s)	321
XapI	RAATTY	2 cut(s)	413, 531
XceI	RCATGY	1 cut(s)	598
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.