Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007111.1

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Forward (+)

46563 .. 47647

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggagaggctccaaggacccattaatccttgtttctttggagaccatttggatttgcagtgcttagagcaaggattcaccaccacacatggcttgagatttgaggaagaagaagcactgtacctctcaggcttggaagatagaatgccatttcttcagatgctacaaagcattgatttccccccgtgtgatttcactcaaaaagagccaagctttcaagcactgttgagattacagcacaagaccggtacaacttggcctgaaatggaaaatacccaaagttcccaaattcacacacttgaggcacttgagagctgtgtaactcaagacaatcaacaacagttgtattcaccagcaaaatctgaaggaagagaccctcaccaaaaccctctttcagtttctggtactcttgagggtggtggtggtgtgagctcagattgcaaccgagaaatgcagcaactcaactcagcgaaaatgggtcctaaccagaccctgcagacccagttcaccaagtcggcttcttctccggccacccgagagagacgaaagcgcaagagaacaagaccaaccaagaacaaagaggaagtagagagccagagaatgacccacattgctgttgagcgcaaccgcagacgccaaatgaatgaccatctcaatggtctcagatccctcatgcccccttcctacattcaaagggtaataactaactgcggtaaccaaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

241

Amino Acids

27.52

Weight (kDa)

6.66

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	199 - 228	4.3e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	628, 711
AclWI	GGATC	1 cut(s)	660
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	2 cut(s)	288, 720
AcuI	CTGAAG	2 cut(s)	140, 384
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	3 cut(s)	122, 250, 406
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	218, 692
AluBI	AGCT	3 cut(s)	213, 315, 432
AluI	AGCT	3 cut(s)	213, 315, 432
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	4 cut(s)	36, 366, 535, 665
AlwI	GGATC	1 cut(s)	660
AlwNI	CAGNNNCTG	2 cut(s)	401, 493
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	2 cut(s)	257, 528
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	288, 720
AseI	ATTAAT	1 cut(s)	24
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	552, 624
AspS9I	GGNCC	2 cut(s)	17, 479
AsuHPI	GGTGA	4 cut(s)	70, 342, 371, 499
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	17, 479
BanII	GRGCYC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	1 cut(s)	657
BcoDI	GTCTC	4 cut(s)	36, 366, 535, 665
BfmI	CTRYAG	1 cut(s)	494
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme18I	GGWCC	2 cut(s)	17, 479
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	17, 479
BmiI	GGNNCC	3 cut(s)	11, 19, 480
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	496
BpuEI	CTTGAG	5 cut(s)	115, 309, 320, 329, 431
BsaHI	GRCGYC	1 cut(s)	634
BsaI	GGTCTC	3 cut(s)	36, 366, 665
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	4 cut(s)	141, 447, 480, 676
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	466
BshFI	GGCC	2 cut(s)	259, 530
BshTI	ACCGGT	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	246, 527
BsmAI	GTCTC	4 cut(s)	36, 366, 535, 665
BsmBI	CGTCTC	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	259, 530
Bso31I	GGTCTC	3 cut(s)	36, 366, 665
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	665
BspACI	CCGC	2 cut(s)	628, 711
BspANI	GGCC	2 cut(s)	259, 530
BspCNI	CTCAG	4 cut(s)	140, 446, 479, 675
BspLI	GGNNCC	3 cut(s)	11, 19, 480
BspMAI	CTGCAG	1 cut(s)	498
BspPI	GGATC	1 cut(s)	660
BspTNI	GGTCTC	3 cut(s)	36, 366, 665
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	665
BssNI	GRCGYC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	3 cut(s)	120, 225, 342
Bst6I	CTCTTC	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	634
BstDEI	CTNAG	5 cut(s)	64, 127, 433, 466, 662
BstEII	GGTNACC	1 cut(s)	713
BstHHI	GCGC	2 cut(s)	552, 624
BstKTI	GATC	1 cut(s)	668
BstMAI	GTCTC	4 cut(s)	36, 366, 535, 665
BstMBI	GATC	1 cut(s)	665
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstPI	GGTNACC	1 cut(s)	713
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	665
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	259, 530
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	3 cut(s)	65, 116, 221
CaiI	CAGNNNCTG	2 cut(s)	401, 493
CfoI	GCGC	2 cut(s)	552, 624
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	17, 479
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	121, 249, 405
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	2 cut(s)	89, 673
CviQI	GTAC	3 cut(s)	121, 249, 405
DdeI	CTNAG	5 cut(s)	64, 127, 433, 466, 662
DpnI	GATC	1 cut(s)	667
DpnII	GATC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	3 cut(s)	36, 366, 665
Eco47I	GGWCC	2 cut(s)	17, 479
Eco53kI	GAGCTC	1 cut(s)	432
Eco57I	CTGAAG	2 cut(s)	140, 384
Eco88I	CYCGRG	1 cut(s)	534
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	432
EcoO109I	RGGNCCY	2 cut(s)	17, 479
EcoO65I	GGTNACC	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	2 cut(s)	92, 676
FaiI	YATR	2 cut(s)	90, 674
FatI	CATG	2 cut(s)	88, 672
Fnu4HI	GCNGC	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	455
GlaI	GCGC	2 cut(s)	551, 623
GluI	GCNGC	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	259, 530
HapII	CCGG	2 cut(s)	246, 527
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	2 cut(s)	552, 624
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	2 cut(s)	92, 676
Hin6I	GCGC	2 cut(s)	550, 622
HinP1I	GCGC	2 cut(s)	550, 622
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	246, 527
HphI	GGTGA	4 cut(s)	70, 342, 371, 499
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	4 cut(s)	159, 364, 436, 665
Hpy188III	TCNNGA	2 cut(s)	326, 410
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	2 cut(s)	359, 690
HpyCH4III	ACNGT	3 cut(s)	120, 225, 342
HpyCH4V	TGCA	4 cut(s)	58, 441, 454, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	5 cut(s)	64, 127, 433, 466, 662
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	2 cut(s)	92, 676
HspAI	GCGC	2 cut(s)	550, 622
Kzo9I	GATC	1 cut(s)	665
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	319, 713
MalI	GATC	1 cut(s)	667
MboI	GATC	1 cut(s)	665
MboII	GAAGA	6 cut(s)	119, 122, 146, 149, 381, 513
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	2 cut(s)	288, 720
MnlI	CCTC	8 cut(s)	97, 134, 295, 387, 399, 406, 574, 680
MseI	TTAA	2 cut(s)	24, 724
MslI	CAYNNNNRTG	1 cut(s)	654
MspI	CCGG	2 cut(s)	246, 527
Mva1269I	GAATGC	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	438
NdeII	GATC	1 cut(s)	665
NlaIII	CATG	2 cut(s)	92, 676
NlaIV	GGNNCC	3 cut(s)	11, 19, 480
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	75
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	456
PpuMI	RGGWCCY	2 cut(s)	17, 479
PshBI	ATTAAT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	434
Psp5II	RGGWCCY	2 cut(s)	17, 479
PspEI	GGTNACC	1 cut(s)	713
PspN4I	GGNNCC	3 cut(s)	11, 19, 480
PspPI	GGNCC	2 cut(s)	17, 479
PspPPI	RGGWCCY	2 cut(s)	17, 479
PstI	CTGCAG	1 cut(s)	498
PstNI	CAGNNNCTG	2 cut(s)	401, 493
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	3 cut(s)	122, 250, 406
RsaNI	GTAC	3 cut(s)	121, 249, 405
RseI	CAYNNNNRTG	1 cut(s)	654
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	24, 724
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	1 cut(s)	665
Sau96I	GGNCC	2 cut(s)	17, 479
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	4 cut(s)	126, 215, 317, 434
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	2 cut(s)	17, 479
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	5 cut(s)	94, 299, 308, 324, 410
SmoI	CTYRAG	5 cut(s)	94, 299, 308, 324, 410
Sse9I	AATT	2 cut(s)	288, 720
SsiI	CCGC	2 cut(s)	628, 711
SstI	GAGCTC	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	120, 225, 342
TasI	AATT	2 cut(s)	288, 720
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	24, 724
Tru9I	TTAA	2 cut(s)	24, 724
TscAI	CASTG	3 cut(s)	65, 123, 228
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	656
TspRI	CASTG	3 cut(s)	65, 123, 228
VpaK11BI	GGWCC	2 cut(s)	17, 479
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	2 cut(s)	288, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.