Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007226.1

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Reverse (-)

12878 .. 14062

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ctggagaagtccatcaaagtcactgagtcaccagtcagatcagtaaagtttgtagctcgcaaacactggattataactggggctgatgacaagttcattcgcgtatacaactacaataccatggaaaagatcaaagagtatgaagcacatactgattatatcaggagtgtcactgtccatccaactctaccatatctgctgtcatgttctgatgacaaggttataaagctttgggactgggagaaggactgggaatgcactcaggtctttgaggggcattcccactatgtgatgcaagtggctttcaatccgaaagacaccaatagttttgctagtgcgtctctcgatggaaccattaagacatggaacattggctcttctgccccaaattttacattacaaggccactcaaaaggagtgaattgtgttgattatttcgttcacagcgataagacttacctgttaagtggttctgatgacttcactgccaaggtatgggactatgaaactacaagttgtgtgcaaactctagaaggtcatgagaacaatgtaacaactgtgagtgtacatcctgagcttcccataataattacaacttctgaggatgggactgttcatatatggaatgcaaccacatttagtctagagcacaaactgaactatggtcttgaaagagtttgggccattggacacaagaaaggatcatacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

237

Amino Acids

27.07

Weight (kDa)

6.05

Isoelectric Point (pI)

23.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	4 - 151	6.2e-13	WDR55
WD40_Prp19	PF24814	4 - 90	1.7e-13	Prp19 WD40 domain
EIF3I	PF24805	5 - 82	2.9e-06	EIF3I
WD40_Gbeta	PF25391	6 - 147	4.6e-12	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	7 - 126	1.4e-26	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	7 - 149	4.9e-18	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	8 - 125	1.7e-12	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	9 - 83	4.1e-11	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	9 - 127	2.9e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	10 - 79	6.1e-10	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	10 - 83	5.1e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	10 - 123	2e-14	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	19 - 123	3.7e-10	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	24 - 212	2.1e-14	TEP-1 second beta-propeller
Beta-prop_WDR75_1st	PF23869	28 - 81	4.3e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	42 - 79	5.2e-09	WD domain, G-beta repeat
Beta-prop_EIPR1	PF23609	47 - 122	6.4e-07	EIPR1 beta-propeller
Beta-prop_THOC3	PF25174	66 - 142	1.2e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	78 - 229	1.7e-28	WDR3 first beta-propeller domain
WD40	PF00400	84 - 123	1.1e-07	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	86 - 137	1.1e-07	WDHD1 first WD40 domain
WD40_Prp19	PF24814	88 - 216	1.4e-21	Prp19 WD40 domain
EIF3I	PF24805	90 - 177	3.8e-07	EIF3I
WD40_Gbeta	PF25391	106 - 209	1e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	106 - 229	2.7e-27	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	107 - 229	7e-14	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	113 - 212	3.2e-08	SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	116 - 208	6.3e-06	WDR36/Utp21 first beta-propeller
Beta-prop_EML	PF23409	118 - 218	2.7e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	129 - 167	5e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	132 - 218	2.8e-08	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	135 - 214	4.2e-09	WDR55
Beta-prop_THOC3	PF25174	136 - 219	3.5e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	141 - 220	1.1e-14	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	146 - 212	2.5e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st	PF23869	148 - 211	7.2e-08	WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz	PF24807	149 - 220	7e-07	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	150 - 209	4.6e-06	MABP1/WDR62 second WD40 domain
WD40	PF00400	172 - 209	6.3e-10	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	74, 224
AccB7I	CCANNNNNTGG	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	102
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	2 cut(s)	307, 671
AluBI	AGCT	3 cut(s)	56, 229, 577
AluI	AGCT	3 cut(s)	56, 229, 577
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	709
AoxI	GGCC	2 cut(s)	403, 681
ApoI	RAATTY	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	651
BccI	CCATC	4 cut(s)	20, 186, 341, 599
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	3 cut(s)	333, 530, 644
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	1 cut(s)	352
BmrI	ACTGGG	3 cut(s)	87, 247, 259
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	3 cut(s)	87, 247, 259
BpmI	CTGGAG	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	120, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	5 cut(s)	32, 71, 82, 242, 254
BseDI	CCNNGG	2 cut(s)	120, 489
BseGI	GGATG	3 cut(s)	178, 568, 610
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	4 cut(s)	15, 275, 564, 591
BseNI	ACTGG	5 cut(s)	32, 71, 82, 242, 254
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	405, 683
BsiHKAI	GWGCWC	1 cut(s)	651
BslFI	GGGAC	3 cut(s)	248, 512, 622
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	3 cut(s)	248, 512, 622
BsmI	GAATGC	3 cut(s)	260, 277, 631
BsnI	GGCC	2 cut(s)	405, 683
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	38, 129, 701
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	2 cut(s)	405, 683
BspCNI	CTCAG	4 cut(s)	16, 274, 565, 592
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	382
BsrGI	TGTACA	1 cut(s)	565
BsrI	ACTGG	5 cut(s)	32, 71, 82, 242, 254
BssECI	CCNNGG	2 cut(s)	120, 489
BssMI	GATC	3 cut(s)	38, 129, 701
BssNAI	GTATAC	1 cut(s)	106
BssT1I	CCWWGG	2 cut(s)	120, 489
Bst1107I	GTATAC	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	175, 559, 613
Bst6I	CTCTTC	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	24, 261, 573, 600
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	178, 568, 610
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	41, 132, 704
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	38, 129, 701
BstUI	CGCG	1 cut(s)	102
BstZ17I	GTATAC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	405, 683
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	178, 568, 610
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	4 cut(s)	21, 64, 171, 483
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	681
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	4 cut(s)	121, 204, 363, 539
CviJI	RGCY	8 cut(s)	56, 83, 229, 302, 375, 405, 577, 683
CviKI_1	RGCY	8 cut(s)	56, 83, 229, 302, 375, 405, 577, 683
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	4 cut(s)	24, 261, 573, 600
DpnI	GATC	3 cut(s)	40, 131, 703
DpnII	GATC	3 cut(s)	38, 129, 701
DraIII	CACNNNGTG	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	120, 489
EcoT14I	CCWWGG	2 cut(s)	120, 489
ErhI	CCWWGG	2 cut(s)	120, 489
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	4 cut(s)	124, 207, 366, 542
FaqI	GGGAC	3 cut(s)	248, 512, 622
FatI	CATG	4 cut(s)	120, 203, 362, 538
FblI	GTMKAC	1 cut(s)	105
FokI	GGATG	3 cut(s)	165, 555, 617
FspBI	CTAG	3 cut(s)	333, 530, 644
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	405, 683
HgaI	GACGC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	124, 207, 366, 542
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	26
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	106, 442, 566
Hpy188I	TCNGA	5 cut(s)	38, 211, 312, 475, 601
Hpy188III	TCNNGA	7 cut(s)	163, 344, 530, 539, 572, 644, 668
Hpy8I	GTNNAC	3 cut(s)	106, 442, 566
HpyAV	CCTTC	2 cut(s)	238, 527
HpyCH4III	ACNGT	3 cut(s)	175, 559, 613
HpyCH4V	TGCA	4 cut(s)	258, 295, 523, 629
HpyF3I	CTNAG	4 cut(s)	24, 261, 573, 600
Hsp92II	CATG	4 cut(s)	124, 207, 366, 542
Kzo9I	GATC	3 cut(s)	38, 129, 701
LguI	GCTCTTC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	45, 52, 63, 148, 223, 235, 248, 473, 585
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	3 cut(s)	333, 530, 644
MaeIII	GTNAC	4 cut(s)	19, 27, 169, 550
MalI	GATC	3 cut(s)	40, 131, 703
MboI	GATC	3 cut(s)	38, 129, 701
MboII	GAAGA	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	3 cut(s)	388, 421, 588
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	265, 595
MseI	TTAA	2 cut(s)	357, 464
Mva1269I	GAATGC	3 cut(s)	260, 277, 631
MvnI	CGCG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	38, 129, 701
NlaIII	CATG	4 cut(s)	124, 207, 366, 542
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	19, 27, 169
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PctI	GAATGC	3 cut(s)	260, 277, 631
PflMI	CCANNNNNTGG	1 cut(s)	495
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PsiI	TTATAA	2 cut(s)	74, 224
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	681
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	357, 464
Sau3AI	GATC	3 cut(s)	38, 129, 701
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	8 cut(s)	58, 222, 231, 267, 462, 495, 538, 579
SfaNI	GCATC	1 cut(s)	282
Sse9I	AATT	3 cut(s)	388, 421, 588
SspMI	CTAG	3 cut(s)	333, 530, 644
StyI	CCWWGG	2 cut(s)	120, 489
TaaI	ACNGT	3 cut(s)	175, 559, 613
TaqI	TCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	388, 421, 588
TatI	WGTACW	1 cut(s)	565
Tru1I	TTAA	2 cut(s)	357, 464
Tru9I	TTAA	2 cut(s)	357, 464
TscAI	CASTG	4 cut(s)	28, 71, 178, 490
TseFI	GTSAC	3 cut(s)	19, 27, 169
Tsp45I	GTSAC	3 cut(s)	19, 27, 169
TspDTI	ATGAA	4 cut(s)	85, 156, 519, 605
TspRI	CASTG	4 cut(s)	28, 71, 178, 490
Van91I	CCANNNNNTGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	388
XbaI	TCTAGA	2 cut(s)	529, 643
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	3 cut(s)	333, 530, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.