Rmu_sc0007511.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007511.1
OG0011145
Physical Location & Seq
Reverse (-)
19650 .. 22019
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2370 bp
atgaagccaactgaagaagaagaagaagaagaagaagaagaagaaggcttctttctattcatcatcatcttccccaagatgctgttacttcttcgcacactgttccacacaaggtgcagagtctcctcccttcgagtaagacctaaatacccatcatctaattcctgctttatcaatgcatcatcatcactatcatcatcgcatggttctcttatagcttcccctttggtttggttcaccagtttcttctgtattattcgcttcccatttgtcactaaatccaatcctgatatggttcaaggaaacttaaatgtagaatctttgagtcgaattgttcagctggactattgggacgaccccagaattgttagtgtgtttggttcggcattggcgccgatttgggtgtcaaggtttttggtggaactgagaaaagatcccaacttggcattcaagttgttcaaatgggcgaaaacccggaccgggttttgccacactactgagtcttattgtattttggttcacatactttttgttggtagaatgtatattgatgcccatgaggttattagagagttggtgttgttgagccgggggttgccgggttttgatgtgtttgatgggctgtggcagaccaggaatgtttgtcgtccggggtttggagtgtttgatgccttgtttagtgttttggttgagcttggaatgcttgagaaagcaagtgagtgcttcttgaggatgaggaagtgtagagttttgccgaaagtgcgatcttgtaatgcccttttgcacgggctttcgaagtcagggaaggggaatttgtcaaggcagttttttaaggatatgcttggggctgggatttccccttctgttttcacattcaatataatgattggatatacgtgcaaagaaggcgatttggaaaccgcaagaagcttgtttgcacaaatgaaacagttgggtcttacacctgatattgtgacatataattctcttattgacggatatggaaaggttggattattagatgattcagtttgcatatttgaagaaatgaaggatgtaggttgtgaacctgatctaataacatacaatgctttgattaattgtttttgtaaatttgaaaaaatgcctcaagctttcaattttctccgcgagatgatgagtaatggcttgaaaccgaatgtcataacgtatagcacgttgattgatgccttctgtaaggaagggatgatgcaagaggcaattaagatttttatagacatgaaacgagttggtctttcagctaatgagttcacctatacttctttgattgatgcaagttgtaaagctggaaatttgagccaagcactgaagttcagaaatgagatgttagaggcaggagttagtttcaatattgtaacttatacagctctactggatgggctgtgtgaagatgggaagatggaggaagcagaagaagtttttagggaggtgctaaactctggaataattcctaaccaggaaatatgtaccgcccttgttcatgggtatgttaagactaagaagatggagaatgctacagaattcttgaaggatatcaaggggaaaggctttaaaccagatttgttactttttgggaccatcatttgggtcctttgctctcaaaataaggttgaagaggctgagcttgtaaccagtgaaatcaaggattgtggtttaactgcaaatcatttcatttacacaacacttatggatgcttatttcaagaaaggaaacaccaatgaggcactcaatgttttacagcgaatgctggacaacaatattgaggttagtgtggtaacatattgtgcactaattgatggtttgtgcaaaaaggggttgctccaagaggccattacttattttaggacgatgtccaacattggcttgcaacccaatgttgcagtttttacggccttaattgatggtctgtgtaaaggtagttgcattgaagcagctaaggagctgtttaatgaaatgctagacaagggtatgattccagataaagctgcttacaccactctaatagatggaaacttaaagcatggaaatcttgaggaagctttgagcatgcacaggagaatgaaagaaattggtatggagcttgacctgcatgcatatacttccttgatttgggggctttctcaccttggtcagatgcaacaagcaaaagcattcctggatgagatgattgggaagggtataattcctgatgagattctcattgtttgtcttgtaagaaaatactatgagctagggaatgtggatgaagccatcaagttgcagactgaatggcaaaacaggggtctaagaactggaacttctaattttgtgtttcctaatgcaagaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

789

Amino Acids

88.94

Weight (kDa)

5.75

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 252 - 296 1.1e-09 PPR repeat family
PPR_1 PF12854 284 - 316 1.8e-07 PPR repeat
PPR_2 PF13041 287 - 336 1.9e-16 PPR repeat family
PPR_3 PF13812 310 - 369 6.2e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 319 - 351 7.9e-10 PPR repeat
PPR_2 PF13041 322 - 371 1.1e-17 PPR repeat family
PPR PF01535 325 - 355 2.5e-08 PPR repeat
PPR_long PF17177 341 - 444 2e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 354 - 385 1.4e-10 PPR repeat
PPR_2 PF13041 357 - 406 6.1e-18 PPR repeat family
PPR PF01535 360 - 390 2.5e-06 PPR repeat
PPR_3 PF13812 382 - 438 1.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 388 - 421 1.8e-13 PPR repeat
PPR PF01535 395 - 424 4.1e-09 PPR repeat
PPR_2 PF13041 395 - 441 9.2e-16 PPR repeat family
PPR_long PF17177 410 - 486 4.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 424 - 455 3.3e-09 PPR repeat
PPR PF01535 430 - 460 2e-06 PPR repeat
PPR_2 PF13041 432 - 475 2.2e-12 PPR repeat family
PPR_long PF17177 445 - 606 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 453 - 498 8.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 459 - 489 9.8e-10 PPR repeat
PPR_2 PF13041 463 - 499 2e-08 PPR repeat family
PPR PF01535 465 - 495 1.1e-07 PPR repeat
PPR_3 PF13812 487 - 543 8.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 568 - 616 1.4e-13 PPR repeat family
PPR PF01535 571 - 600 5.7e-06 PPR repeat
PPR_long PF17177 582 - 736 1.1e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 599 - 699 5e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 599 - 630 3.2e-08 PPR repeat
PPR_2 PF13041 603 - 651 2.8e-12 PPR repeat family
PPR PF01535 605 - 634 5.6e-06 PPR repeat
PPR_1 PF12854 634 - 665 4.6e-07 PPR repeat
PPR_2 PF13041 637 - 683 1.8e-12 PPR repeat family
PPR PF01535 641 - 669 3.9e-06 PPR repeat
PPR PF01535 676 - 704 7.1e-07 PPR repeat
PPR_2 PF13041 676 - 720 5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2133
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 1623
AccII CGCG 1 cut(s) 1149
AciI CCGC 3 cut(s) 921, 1147, 1509
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 4 cut(s) 811, 1112, 1330, 1559
AcuI CTGAAG 2 cut(s) 33, 1367
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 1 cut(s) 1507
AfiI CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
AjnI CCWGG 3 cut(s) 632, 1494, 2193
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
Alw21I GWGCWC 1 cut(s) 1828
Alw26I GTCTC 1 cut(s) 127
Alw44I GTGCAC 1 cut(s) 1824
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 1866, 1929
ApaLI GTGCAC 1 cut(s) 1824
ApeKI GCWGC 2 cut(s) 1970, 2024
ApoI RAATTY 4 cut(s) 811, 1112, 1330, 1559
ArsI GACNNNNNNTTYG 2 cut(s) 2305, 2337
AseI ATTAAT 1 cut(s) 1098
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 477, 1614, 1627
AsuC2I CCSGG 5 cut(s) 475, 481, 590, 600, 651
AsuHPI GGTGA 3 cut(s) 229, 1282, 2153
AsuII TTCGAA 1 cut(s) 794
AvaII GGWCC 3 cut(s) 477, 1614, 1627
BaeGI GKGCMC 1 cut(s) 1828
BanI GGYRCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 1828
BbvI GCAGC 2 cut(s) 1982, 2011
BceAI ACGGC 1 cut(s) 1944
BciT130I CCWGG 3 cut(s) 634, 1496, 2195
BcnI CCSGG 5 cut(s) 475, 481, 590, 600, 651
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 1997, 2270
BfmI CTRYAG 1 cut(s) 1554
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 2133
BisI GCNGC 2 cut(s) 1971, 2025
BlpI GCTNAGC 1 cut(s) 1659
BlsI GCNGC 2 cut(s) 1972, 2026
Bme1390I CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
Bme18I GGWCC 3 cut(s) 477, 1614, 1627
BmgT120I GGNCC 3 cut(s) 477, 1614, 1627
BmiI GGNNCC 3 cut(s) 393, 1615, 1628
BmrFI CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
BmsI GCATC 9 cut(s) 69, 188, 541, 658, 1195, 1218, 1300, 1720, 2163
Bpu10I CCTNAGC 1 cut(s) 1974
Bpu1102I GCTNAGC 1 cut(s) 1659
Bpu14I TTCGAA 1 cut(s) 794
BpuEI CTTGAG 4 cut(s) 725, 748, 1113, 2090
BpuMI CCSGG 5 cut(s) 475, 481, 590, 600, 651
BsaAI YACGTR 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 589, 650, 2164
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
Bse1I ACTGG 4 cut(s) 240, 1416, 1671, 2335
BseBI CCWGG 3 cut(s) 634, 1496, 2195
BseDI CCNNGG 3 cut(s) 589, 650, 2164
BseGI GGATG 7 cut(s) 738, 1060, 1230, 1420, 1735, 2203, 2287
BseLI CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
BseMII CTCAG 3 cut(s) 416, 489, 1650
BseNI ACTGG 4 cut(s) 240, 1416, 1671, 2335
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 1828
BseXI GCAGC 2 cut(s) 1982, 2011
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 1149
BshFI GGCC 2 cut(s) 1868, 1931
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 1828
BsiSI CCGG 5 cut(s) 475, 480, 589, 599, 650
BslFI GGGAC 2 cut(s) 365, 1627
BslI CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 365, 1627
BsmI GAATGC 5 cut(s) 446, 705, 1555, 1788, 2189
BsnI GGCC 2 cut(s) 1868, 1931
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 1828
Bsp143I GATC 3 cut(s) 433, 764, 1072
Bsp1720I GCTNAGC 1 cut(s) 1659
BspACI CCGC 3 cut(s) 921, 1147, 1509
BspANI GGCC 2 cut(s) 1868, 1931
BspCNI CTCAG 3 cut(s) 417, 490, 1651
BspFNI CGCG 1 cut(s) 1149
BspLI GGNNCC 3 cut(s) 393, 1615, 1628
BspMI ACCTGC 1 cut(s) 2133
BspPI GGATC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 391
BsrI ACTGG 4 cut(s) 240, 1416, 1671, 2335
BssECI CCNNGG 3 cut(s) 589, 650, 2164
BssMI GATC 3 cut(s) 433, 764, 1072
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 2164
Bst2UI CCWGG 3 cut(s) 634, 1496, 2195
Bst4CI ACNGT 2 cut(s) 102, 951
Bst6I CTCTTC 1 cut(s) 1647
BstACI GRCGYC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 897
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 1904, 2087, 2130
BstDEI CTNAG 6 cut(s) 425, 498, 1536, 1659, 1974, 2324
BstF5I GGATG 7 cut(s) 738, 1060, 1230, 1420, 1735, 2203, 2287
BstFNI CGCG 1 cut(s) 1149
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 3 cut(s) 436, 767, 1075
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 433, 764, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 700, 760, 906, 2125
BstNI CCWGG 3 cut(s) 634, 1496, 2195
BstNSI RCATGY 2 cut(s) 2089, 2132
BstSCI CCNGG 8 cut(s) 473, 479, 588, 598, 632, 649, 1494, 2193
BstSFI CTRYAG 1 cut(s) 1554
BstSLI GKGCMC 1 cut(s) 1828
BstUI CGCG 1 cut(s) 1149
BstV1I GCAGC 2 cut(s) 1982, 2011
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 2 cut(s) 1868, 1931
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 7 cut(s) 738, 1060, 1230, 1420, 1735, 2203, 2287
BtsIMutI CAGTG 3 cut(s) 98, 1343, 1678
BveI ACCTGC 1 cut(s) 2133
Cac8I GCNNGC 3 cut(s) 1904, 2087, 2130
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 3 cut(s) 477, 1614, 1627
CpoI CGGWCCG 1 cut(s) 477
Csp6I GTAC 1 cut(s) 1506
CspCI CAANNNNNGTGG 2 cut(s) 1669, 1704
CspI CGGWCCG 1 cut(s) 477
CviAII CATG 7 cut(s) 203, 557, 1258, 1520, 2060, 2086, 2129
CviQI GTAC 1 cut(s) 1506
DdeI CTNAG 6 cut(s) 425, 498, 1536, 1659, 1974, 2324
DinI GGCGCC 1 cut(s) 393
DpnI GATC 3 cut(s) 435, 766, 1074
DpnII GATC 3 cut(s) 433, 764, 1072
DraI TTTAAA 1 cut(s) 1591
DraIII CACNNNGTG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 1647
EarI CTCTTC 1 cut(s) 1647
Eco130I CCWWGG 1 cut(s) 2164
Eco32I GATATC 1 cut(s) 1573
Eco47I GGWCC 3 cut(s) 477, 1614, 1627
Eco57I CTGAAG 2 cut(s) 33, 1367
EcoO109I RGGNCCY 1 cut(s) 1627
EcoRI GAATTC 1 cut(s) 1559
EcoRII CCWGG 3 cut(s) 632, 1494, 2193
EcoRV GATATC 1 cut(s) 1573
EcoT14I CCWWGG 1 cut(s) 2164
EcoT22I ATGCAT 2 cut(s) 181, 2134
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 2164
FaeI CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
FaqI GGGAC 2 cut(s) 365, 1627
FatI CATG 7 cut(s) 202, 556, 1257, 1519, 2059, 2085, 2128
Fnu4HI GCNGC 2 cut(s) 1971, 2025
FokI GGATG 7 cut(s) 745, 1067, 1237, 1427, 1742, 2210, 2294
Fsp4HI GCNGC 2 cut(s) 1971, 2025
FspBI CTAG 2 cut(s) 1997, 2270
GlaI GCGC 1 cut(s) 393
GluI GCNGC 2 cut(s) 1971, 2025
GsaI CCCAGC 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 2 cut(s) 1868, 1931
HapII CCGG 5 cut(s) 475, 480, 589, 599, 650
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 3 cut(s) 928, 1131, 2076
HinfI GANTC 7 cut(s) 120, 317, 325, 500, 1025, 2011, 2233
HpaII CCGG 5 cut(s) 475, 480, 589, 599, 650
HphI GGTGA 3 cut(s) 229, 1282, 2153
Hpy166II GTNNAC 5 cut(s) 237, 520, 1067, 1290, 1826
Hpy188I TCNGA 2 cut(s) 1355, 2172
Hpy188III TCNNGA 8 cut(s) 287, 727, 1479, 1564, 1741, 2015, 2069, 2225
Hpy8I GTNNAC 5 cut(s) 237, 520, 1067, 1290, 1826
HpyCH4III ACNGT 2 cut(s) 102, 951
HpyCH4IV ACGT 3 cut(s) 896, 1187, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 700, 760, 906, 2125
HpyF3I CTNAG 6 cut(s) 425, 498, 1536, 1659, 1974, 2324
HpySE526I ACGT 3 cut(s) 896, 1187, 1196
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
HspAI GCGC 1 cut(s) 392
KasI GGCGCC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 433, 764, 1072
LmnI GCTCC 3 cut(s) 1863, 1978, 2116
Lsp1109I GCAGC 2 cut(s) 1982, 2011
LweI GCATC 9 cut(s) 69, 188, 541, 658, 1195, 1218, 1300, 1720, 2163
MaeI CTAG 2 cut(s) 1997, 2270
MaeII ACGT 3 cut(s) 896, 1187, 1196
MaeIII GTNAC 7 cut(s) 84, 271, 973, 1393, 1602, 1666, 1813
MalI GATC 3 cut(s) 435, 766, 1074
MboI GATC 3 cut(s) 433, 764, 1072
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 1828
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 3 cut(s) 129, 334, 509
MmeI TCCRAC 2 cut(s) 991, 1917
Mph1103I ATGCAT 2 cut(s) 181, 2134
MslI CAYNNNNRTG 1 cut(s) 1524
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 5 cut(s) 475, 480, 589, 599, 650
MspR9I CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
Mva1269I GAATGC 5 cut(s) 446, 705, 1555, 1788, 2189
MvaI CCWGG 3 cut(s) 634, 1496, 2195
MvnI CGCG 1 cut(s) 1149
MwoI GCNNNNNNNGC 4 cut(s) 700, 760, 906, 2125
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 5 cut(s) 475, 481, 590, 600, 651
NdeII GATC 3 cut(s) 433, 764, 1072
NlaIII CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
NlaIV GGNNCC 3 cut(s) 393, 1615, 1628
NmuCI GTSAC 2 cut(s) 271, 973
NsiI ATGCAT 2 cut(s) 181, 2134
NspI RCATGY 2 cut(s) 2089, 2132
NspV TTCGAA 1 cut(s) 794
PaeI GCATGC 2 cut(s) 2089, 2132
PcsI WCGNNNNNNNCGW 1 cut(s) 1193
PctI GAATGC 5 cut(s) 446, 705, 1555, 1788, 2189
PfeI GAWTC 4 cut(s) 317, 1025, 2011, 2233
PflFI GACNNNGTC 1 cut(s) 1888
PflMI CCANNNNNTGG 1 cut(s) 1623
PfoI TCCNGGA 1 cut(s) 2193
PkrI GCNGC 2 cut(s) 1972, 2026
PleI GAGTC 3 cut(s) 128, 333, 508
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 3 cut(s) 128, 333, 508
Ppu21I YACGTR 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 1627
PshBI ATTAAT 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 1627
Psp6I CCWGG 3 cut(s) 632, 1494, 2193
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 3 cut(s) 632, 1494, 2193
PspN4I GGNNCC 3 cut(s) 393, 1615, 1628
PspPI GGNCC 3 cut(s) 477, 1614, 1627
PspPPI RGGWCCY 1 cut(s) 1627
PsuI RGATCY 1 cut(s) 433
PsyI GACNNNGTC 1 cut(s) 1888
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 1 cut(s) 1507
RsaNI GTAC 1 cut(s) 1506
RseI CAYNNNNRTG 1 cut(s) 1524
Rsr2I CGGWCCG 1 cut(s) 477
RsrII CGGWCCG 1 cut(s) 477
SatI GCNGC 2 cut(s) 1971, 2025
Sau3AI GATC 3 cut(s) 433, 764, 1072
Sau96I GGNCC 3 cut(s) 477, 1614, 1627
SchI GAGTC 3 cut(s) 129, 334, 509
ScrFI CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
SduI GDGCHC 1 cut(s) 1828
SfaNI GCATC 9 cut(s) 69, 188, 541, 658, 1195, 1218, 1300, 1720, 2163
SfcI CTRYAG 1 cut(s) 1554
SfoI GGCGCC 1 cut(s) 393
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 3 cut(s) 477, 1614, 1627
SmiMI CAYNNNNRTG 1 cut(s) 1524
SmlI CTYRAG 4 cut(s) 704, 727, 1128, 2069
SmoI CTYRAG 4 cut(s) 704, 727, 1128, 2069
SphI GCATGC 2 cut(s) 2089, 2132
SsiI CCGC 3 cut(s) 921, 1147, 1509
SspDI GGCGCC 1 cut(s) 391
SspI AATATT 2 cut(s) 1390, 1798
SspMI CTAG 2 cut(s) 1997, 2270
StyD4I CCNGG 8 cut(s) 473, 479, 588, 598, 632, 649, 1494, 2193
StyI CCWWGG 1 cut(s) 2164
TaaI ACNGT 2 cut(s) 102, 951
TaiI ACGT 3 cut(s) 899, 1190, 1199
TaqI TCGA 3 cut(s) 133, 328, 794
TfiI GAWTC 4 cut(s) 317, 1025, 2011, 2233
TscAI CASTG 3 cut(s) 105, 1350, 1678
TseFI GTSAC 2 cut(s) 271, 973
TseI GCWGC 2 cut(s) 1970, 2024
Tsp45I GTSAC 2 cut(s) 271, 973
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 3 cut(s) 105, 1350, 1678
Tth111I GACNNNGTC 1 cut(s) 1888
Van91I CCANNNNNTGG 1 cut(s) 1623
VneI GTGCAC 1 cut(s) 1824
VpaK11BI GGWCC 3 cut(s) 477, 1614, 1627
VspI ATTAAT 1 cut(s) 1098
XapI RAATTY 4 cut(s) 811, 1112, 1330, 1559
XceI RCATGY 2 cut(s) 2089, 2132
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 2 cut(s) 1997, 2270
Zsp2I ATGCAT 2 cut(s) 181, 2134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.