Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012713.1

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Forward (+)

2414 .. 2818

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012713.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggaaacaggcatatatggtggtgccgggtctgtctcctttgacgagtttgaccagttgacatctgttcatgttaattccacggatgagctatttcttgctagtggatactcaacagacgttgccttatatgacattagtagtggaaagcgcttacaggtgtttactaatatgcatcgggagcatattaatgcaataaagtttgcaaaccattccccatctgttttcgccacttcttcatttgatcaggatgtcaagatgtgggacctaagacagaaaccaataagcccttgctattcctcttcaagttctaggggtaatgtgatggtttgcttttctcctgatgatcactatcttcttctctcagctgttgataacgaggtaatttctatctttagttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

4.79

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AfeI	AGCGCT	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	306
AluBI	AGCT	2 cut(s)	91, 368
AluI	AGCT	2 cut(s)	91, 368
Alw26I	GTCTC	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	152
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	23
BccI	CCATC	2 cut(s)	226, 319
BciVI	GTATCC	1 cut(s)	101
BclI	TGATCA	2 cut(s)	244, 346
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	2 cut(s)	102, 312
BfoI	RGCGCY	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	25, 266
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	91, 256
BseJI	GATNNNNATC	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	244, 346
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	25, 266
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	244, 346
Bst6I	CTCTTC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	269, 364
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	91, 256
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	247, 349
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	244, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	91, 256
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	3 cut(s)	91, 288, 368
CviKI_1	RGCY	3 cut(s)	91, 288, 368
DdeI	CTNAG	2 cut(s)	269, 364
DpnI	GATC	2 cut(s)	246, 348
DpnII	GATC	2 cut(s)	244, 346
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	177
FaeI	CATG	1 cut(s)	74
FaiI	YATR	9 cut(s)	14, 16, 18, 72, 130, 132, 173, 186, 403
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	70
FbaI	TGATCA	2 cut(s)	244, 346
FokI	GGATG	2 cut(s)	98, 263
FspBI	CTAG	2 cut(s)	102, 312
GlaI	GCGC	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	154
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	60, 165
Hpy188III	TCNNGA	4 cut(s)	179, 248, 256, 341
Hpy8I	GTNNAC	2 cut(s)	60, 165
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	175, 194, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	269, 364
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	2 cut(s)	244, 346
Kzo9I	GATC	2 cut(s)	244, 346
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	40, 68, 143, 233, 354
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	102, 312
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	246, 348
MboI	GATC	2 cut(s)	244, 346
MboII	GAAGA	4 cut(s)	228, 294, 347, 350
MluCI	AATT	2 cut(s)	76, 384
MnlI	CCTC	2 cut(s)	310, 373
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	2 cut(s)	75, 189
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	244, 346
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	25, 266
NsiI	ATGCAT	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	25, 266
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	75, 189
Sau3AI	GATC	2 cut(s)	244, 346
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	6 cut(s)	93, 123, 162, 270, 370, 384
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	76, 384
SspMI	CTAG	2 cut(s)	102, 312
StyD4I	CCNGG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	123
TasI	AATT	2 cut(s)	76, 384
Tru1I	TTAA	2 cut(s)	75, 189
Tru9I	TTAA	2 cut(s)	75, 189
TspDTI	ATGAA	3 cut(s)	59, 228, 390
TspGWI	ACGGA	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	189
XspI	CTAG	2 cut(s)	102, 312
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.