Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Forward (+)

5983547 .. 5988646

Gene Structure 5100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG058100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAACTTGATGCTTCTGCGGTTGAAGCAGTTGACATACACAATGAATCATTGCATGTTTTGAATGGAAAATATGCGCTGTTGTTGATGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTCCAAGATTTGGCATTTGGAAAGGATTTCTTGAGGTCTCTTTCTGCTGCCAAAATGGGATCTTGTGCTAGGCCATTCTTGAACGCGCTTTCTTTTTCAGGCAGTACTCTGGTAGGTGAAAGTAAGAGCTTTCGTCCTAGGCAGTTTGAGTATCATCCATCCAACTCCAGCCTTATGGTCTTTGGAACATTAGATGGTGAAATAGTTGCAGTCAACCATGAGAATGGGAAAATTGTCAGTTATATCCCATCACTAGGAGCAATGAATAGTGTGCTGGGACTCTGTTGGCTCAAGAAGTATCCCTCTAAGGATGTCAAGATGTGGGACCTAAGGCAGAAACCAATAAGTCTTTGCTATTCCTCTTCAAGCTCTAGGGGTAATGTGATGGTTTGCTTTTCTCCTGATGATCACCATCTTCTTGTCTCAGCTGTTGATAACGAGGTTAGGCAACTTCTTGCAGTTGATGGGAGACTTCACTTGAATTTTGAGATAGCCTCTACAGGAAGTTCTCAGAACTACACTCGATCCTATTACATGAATGGAAGAGATTATATCATCAGTGGGAGTTGTGATGAACATGTTGTCCGCATATGCTGTGCTCAAAAAGGGAGACGCCTGAGGGATATATCTTTGGAGGGAGGAGGAAGATCTAGGAGTTCTATGTTTGTGCAATCTTTGAGGGGTGATCCTTTCAGAGAATTCAACATGAGTATCTTGGCAGCCCATATGCGTCCAAGATCGAAGTCTAAAATTATCAAGGTCAATCTGCTAGCGTCTAGTGATTATGCCAAGGAACACTTTTATGGTCAGCAGGCTTGCCCAACCAATAGTTTGGGAGGGAAGGGTTTAAAAGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

327

Amino Acids

36.35

Weight (kDa)

9.12

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	2 - 55	4.3e-07	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccII	CGCG	1 cut(s)	209
AciI	CCGC	2 cut(s)	20, 709
AclWI	GGATC	3 cut(s)	190, 642, 803
AcsI	RAATTY	2 cut(s)	604, 821
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	2 cut(s)	229, 980
AfiI	CCNNNNNNNGG	2 cut(s)	133, 377
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	6 cut(s)	26, 64, 205, 489, 604, 826
AloI	GAACNNNNNNTCC	2 cut(s)	690, 722
AluBI	AGCT	4 cut(s)	109, 252, 492, 551
AluI	AGCT	4 cut(s)	109, 252, 492, 551
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	4 cut(s)	165, 550, 586, 727
AlwI	GGATC	3 cut(s)	190, 642, 803
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	170, 842
ApoI	RAATTY	2 cut(s)	604, 821
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	79, 211
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	4 cut(s)	251, 332, 524, 818
AsuNHI	GCTAGC	1 cut(s)	892
AvaII	GGWCC	1 cut(s)	448
AvrII	CCTAGG	1 cut(s)	260
AxyI	CCTNAGG	2 cut(s)	452, 740
BaeI	ACNNNNGTAYC	2 cut(s)	817, 850
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	2 cut(s)	157, 854
BccI	CCATC	6 cut(s)	289, 311, 379, 502, 543, 581
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	4 cut(s)	165, 550, 586, 727
BfaI	CTAG	7 cut(s)	192, 261, 377, 495, 774, 893, 900
BfmI	CTRYAG	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	770
BisI	GCNGC	2 cut(s)	171, 843
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	2 cut(s)	172, 844
BmcAI	AGTACT	2 cut(s)	229, 980
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	449
BmsI	GCATC	1 cut(s)	78
BmtI	GCTAGC	1 cut(s)	896
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	2 cut(s)	175, 398
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	260, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 377
Bse21I	CCTNAGG	2 cut(s)	452, 740
Bse3DI	GCAATG	2 cut(s)	50, 390
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	260, 912
BseGI	GGATG	3 cut(s)	277, 281, 439
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	133, 377
BseMI	GCAATG	2 cut(s)	50, 390
BseMII	CTCAG	3 cut(s)	561, 647, 731
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	2 cut(s)	157, 854
BseYI	CCCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	724
BslFI	GGGAC	2 cut(s)	414, 461
BslI	CCNNNNNNNGG	2 cut(s)	133, 377
BsmAI	GTCTC	4 cut(s)	165, 550, 586, 727
BsmBI	CGTCTC	1 cut(s)	727
BsmFI	GGGAC	2 cut(s)	414, 461
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
BspACI	CCGC	2 cut(s)	20, 709
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	560, 646, 732
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	449
BspOI	GCTAGC	1 cut(s)	896
BspPI	GGATC	3 cut(s)	190, 642, 803
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	50, 390
BssECI	CCNNGG	2 cut(s)	260, 912
BssMI	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
BssNI	GRCGYC	1 cut(s)	736
BssT1I	CCWWGG	2 cut(s)	260, 912
Bst6I	CTCTTC	2 cut(s)	490, 661
BstACI	GRCGYC	1 cut(s)	736
BstC8I	GCNNGC	4 cut(s)	93, 894, 936, 940
BstDEI	CTNAG	5 cut(s)	429, 452, 547, 633, 740
BstF5I	GGATG	3 cut(s)	277, 281, 439
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	79, 211
BstKTI	GATC	7 cut(s)	124, 185, 532, 650, 773, 811, 863
BstMAI	GTCTC	4 cut(s)	165, 550, 586, 727
BstMBI	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	59, 704
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	157, 854
BstX2I	RGATCY	2 cut(s)	182, 770
BstXI	CCANNNNNNTGG	3 cut(s)	298, 347, 955
BstYI	RGATCY	2 cut(s)	182, 770
Bsu36I	CCTNAGG	2 cut(s)	452, 740
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	277, 281, 439
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	4 cut(s)	93, 894, 936, 940
CfoI	GCGC	2 cut(s)	79, 211
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	3 cut(s)	744, 842, 885
Csp6I	GTAC	2 cut(s)	228, 979
CviAII	CATG	5 cut(s)	56, 341, 658, 701, 829
CviQI	GTAC	2 cut(s)	228, 979
DdeI	CTNAG	5 cut(s)	429, 452, 547, 633, 740
DpnI	GATC	7 cut(s)	123, 184, 531, 649, 772, 810, 862
DpnII	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
DraI	TTTAAA	1 cut(s)	972
Eam1104I	CTCTTC	2 cut(s)	490, 661
EarI	CTCTTC	2 cut(s)	490, 661
Eco130I	CCWWGG	2 cut(s)	260, 912
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	448
Eco81I	CCTNAGG	2 cut(s)	452, 740
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	260, 912
ErhI	CCWWGG	2 cut(s)	260, 912
Esp3I	CGTCTC	1 cut(s)	727
FaeI	CATG	5 cut(s)	59, 344, 661, 704, 832
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 905, 937
FaqI	GGGAC	2 cut(s)	414, 461
FatI	CATG	5 cut(s)	55, 340, 657, 700, 828
FauNDI	CATATG	2 cut(s)	713, 849
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	171, 843
FokI	GGATG	3 cut(s)	264, 268, 446
Fsp4HI	GCNGC	2 cut(s)	171, 843
FspBI	CTAG	7 cut(s)	192, 261, 377, 495, 774, 893, 900
GlaI	GCGC	2 cut(s)	78, 210
GluI	GCNGC	2 cut(s)	171, 843
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	196
HgaI	GACGC	3 cut(s)	744, 842, 885
HhaI	GCGC	2 cut(s)	79, 211
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	5 cut(s)	59, 344, 661, 704, 832
Hin6I	GCGC	2 cut(s)	77, 209
HinP1I	GCGC	2 cut(s)	77, 209
HincII	GTYRAC	2 cut(s)	34, 337
HindII	GTYRAC	2 cut(s)	34, 337
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	47, 402
HphI	GGTGA	4 cut(s)	251, 332, 524, 818
Hpy166II	GTNNAC	2 cut(s)	34, 337
Hpy188I	TCNGA	2 cut(s)	636, 818
Hpy188III	TCNNGA	5 cut(s)	154, 202, 415, 439, 524
Hpy8I	GTNNAC	2 cut(s)	34, 337
HpyAV	CCTTC	1 cut(s)	958
HpyCH4V	TGCA	4 cut(s)	55, 332, 581, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	5 cut(s)	429, 452, 547, 633, 740
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	5 cut(s)	59, 344, 661, 704, 832
HspAI	GCGC	2 cut(s)	77, 209
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	8 cut(s)	207, 218, 304, 383, 537, 609, 752, 920
Lsp1109I	GCAGC	2 cut(s)	157, 854
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	7 cut(s)	192, 261, 377, 495, 774, 893, 900
MalI	GATC	7 cut(s)	123, 184, 531, 649, 772, 810, 862
MboI	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
MboII	GAAGA	4 cut(s)	477, 530, 678, 780
MflI	RGATCY	2 cut(s)	182, 770
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	4 cut(s)	354, 604, 821, 873
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	309
MseI	TTAA	1 cut(s)	971
MslI	CAYNNNNRTG	2 cut(s)	345, 924
MspA1I	CMGCKG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	2 cut(s)	713, 849
NdeII	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
NheI	GCTAGC	1 cut(s)	892
NlaIII	CATG	5 cut(s)	59, 344, 661, 704, 832
NlaIV	GGNNCC	1 cut(s)	449
NspI	RCATGY	2 cut(s)	59, 704
PciI	ACATGT	1 cut(s)	700
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	172, 844
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	448
PscI	ACATGT	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	182, 770
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	229, 980
RsaNI	GTAC	2 cut(s)	228, 979
RseI	CAYNNNNRTG	2 cut(s)	345, 924
SaqAI	TTAA	1 cut(s)	971
SatI	GCNGC	2 cut(s)	171, 843
Sau3AI	GATC	7 cut(s)	121, 182, 529, 647, 770, 808, 860
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	2 cut(s)	229, 980
SchI	GAGTC	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	724
SetI	ASST	9 cut(s)	111, 161, 241, 254, 453, 494, 553, 567, 885
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	345, 924
SmlI	CTYRAG	2 cut(s)	154, 413
SmoI	CTYRAG	2 cut(s)	154, 413
Sse9I	AATT	4 cut(s)	354, 604, 821, 873
SsiI	CCGC	2 cut(s)	20, 709
SspMI	CTAG	7 cut(s)	192, 261, 377, 495, 774, 893, 900
StyI	CCWWGG	2 cut(s)	260, 912
TaqI	TCGA	3 cut(s)	112, 646, 863
TasI	AATT	4 cut(s)	354, 604, 821, 873
TatI	WGTACW	2 cut(s)	227, 978
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	971
Tru9I	TTAA	1 cut(s)	971
TscAI	CASTG	1 cut(s)	688
TseI	GCWGC	2 cut(s)	170, 842
TspDTI	ATGAA	4 cut(s)	60, 401, 674, 711
TspRI	CASTG	1 cut(s)	688
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	604, 821
XceI	RCATGY	2 cut(s)	59, 704
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	7 cut(s)	192, 261, 377, 495, 774, 893, 900
ZrmI	AGTACT	2 cut(s)	229, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.