Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Forward (+)

9912651 .. 9914821

Gene Structure 2171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACATTTGCAGAATATTTTGAGCATGTACCATATCAAAGAAAGCCTAAAGAAAATGTCGTTAGTGTGTTACAAAAGCGTGAAATAAGATCAAGCCAAAGTCATGTACAAAGTCCTGGGAAAAAAGTATCGAATCTCTATGGAAAGTCTCAATGCTTCCATACCAGGTCTCTTTCTGCTGCCAAAATGGGATCTTGTGTTTGGCCATTCTTGAACCCGCTTTCTTTTTCAGGCAGTACTCTGGTAGGTGAAAGTAAGAGCTTTCGTCCTAGGCAGTTTGAGTATCATCCATCCAACTCTAGCCTTATGGTCTTTGGAACATTAGATGGTGAAATAGTTGCAGTCAACCATGAGAATGGGAAAATTGTCAGTTATATCCCATCACTAGGAGCAATGAATAGTGTGCTGGGACTCTGTTGGCTCAAGAAGTATCCCTCTAAGCTAATAGCTGGTTCAGATAATGGCTCATTGAAATTGTACGACATCCATCATATGCGATCAATGGAAACAGGCATATATGGTGGTGCCGGGTCTGTCTCCTTTGACGAGTTTGACGAGTTGACATATGTTCATGTTAATTCCACGGATGAGCTATTTCTTGCTAGTGGATACTCAAGAGACGTTGCCTTATATGACATTAGTAGTGGAAAGCGCTTACAGGTGTTTACTAATATACATCAGGAGCATATTAATGTAATAAAGTTTGCAAACCAGTCCCCATATGTTTTTGCCACTTCTTCATTTGATCAGGATGTCAAGATGTGGGAACTAAGACAGAAACCAATAAGCCCTTGCTATTCCTCTTCAAGTTCTAGGGGTAATGTGATGGTTTGCTTTTCTCCTGATGATCACTATCTTCTTGTCTCAGCTGTTGATAACGAGGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

296

Amino Acids

33.17

Weight (kDa)

7.69

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	99 - 288	7.5e-07	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	106 - 296	2.2e-11	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	109 - 296	1.9e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	133 - 296	1.3e-09	WDR3 first beta-propeller domain
Beta-prop_RIG_2nd	PF23775	135 - 285	6.7e-06	RIG second beta-propeller
WD40_Prp19	PF24814	149 - 293	4e-09	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	190 - 295	7.1e-10	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	203
AfaI	GTAC	4 cut(s)	30, 108, 238, 479
AfeI	AGCGCT	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	214, 472, 807
AjnI	CCWGG	2 cut(s)	115, 164
AluBI	AGCT	5 cut(s)	261, 442, 449, 592, 869
AluI	AGCT	5 cut(s)	261, 442, 449, 592, 869
Alw26I	GTCTC	5 cut(s)	153, 174, 541, 612, 868
AlwI	GGATC	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	653
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	690
AspA2I	CCTAGG	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	654
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	260, 341
AvrII	CCTAGG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	5 cut(s)	298, 320, 388, 495, 820
BciT130I	CCWGG	2 cut(s)	117, 166
BciVI	GTATCC	2 cut(s)	441, 602
BclI	TGATCA	2 cut(s)	745, 847
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	5 cut(s)	153, 174, 541, 612, 868
BfaI	CTAG	5 cut(s)	270, 300, 386, 603, 813
BfoI	RGCGCY	1 cut(s)	655
BfuI	GTATCC	2 cut(s)	441, 602
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	117, 166, 529
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	3 cut(s)	117, 166, 529
BpuEI	CTTGAG	2 cut(s)	407, 598
BpuMI	CCSGG	1 cut(s)	529
BsaBI	GATNNNNATC	1 cut(s)	852
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	116, 269, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	117, 166
BseDI	CCNNGG	3 cut(s)	116, 269, 582
BseGI	GGATG	5 cut(s)	286, 290, 483, 592, 757
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	1 cut(s)	712
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	406
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	423, 700
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	5 cut(s)	153, 174, 541, 612, 868
BsmBI	CGTCTC	1 cut(s)	612
BsmFI	GGGAC	2 cut(s)	423, 700
BsnI	GGCC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	5 cut(s)	89, 191, 497, 745, 847
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	878
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	3 cut(s)	116, 269, 582
BssMI	GATC	5 cut(s)	89, 191, 497, 745, 847
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	117, 166
Bst6I	CTCTTC	1 cut(s)	808
BstAUI	TGTACA	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	438, 770, 865
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	5 cut(s)	286, 290, 483, 592, 757
BstH2I	RGCGCY	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	5 cut(s)	92, 194, 500, 748, 850
BstMAI	GTCTC	5 cut(s)	153, 174, 541, 612, 868
BstMBI	GATC	5 cut(s)	89, 191, 497, 745, 847
BstNI	CCWGG	2 cut(s)	117, 166
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	115, 164, 527
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	191
BsuI	GTATCC	2 cut(s)	441, 602
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	5 cut(s)	286, 290, 483, 592, 757
CfoI	GCGC	1 cut(s)	654
CsiI	ACCWGGT	1 cut(s)	164
Csp6I	GTAC	4 cut(s)	29, 107, 237, 478
CviAII	CATG	4 cut(s)	26, 104, 350, 572
CviQI	GTAC	4 cut(s)	29, 107, 237, 478
DdeI	CTNAG	3 cut(s)	438, 770, 865
DpnI	GATC	5 cut(s)	91, 193, 499, 747, 849
DpnII	GATC	5 cut(s)	89, 191, 497, 745, 847
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	808
EarI	CTCTTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	174
Eco47III	AGCGCT	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	115, 164
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	612
FaeI	CATG	4 cut(s)	29, 107, 353, 575
FaqI	GGGAC	2 cut(s)	423, 700
FatI	CATG	4 cut(s)	25, 103, 349, 571
FauI	CCCGC	1 cut(s)	225
FauNDI	CATATG	3 cut(s)	492, 565, 721
FbaI	TGATCA	2 cut(s)	745, 847
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	5 cut(s)	273, 277, 470, 599, 764
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	5 cut(s)	270, 300, 386, 603, 813
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	655
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	528
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	4 cut(s)	29, 107, 353, 575
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	346, 561
HindII	GTYRAC	2 cut(s)	346, 561
HinfI	GANTC	2 cut(s)	133, 411
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	260, 341
Hpy166II	GTNNAC	3 cut(s)	346, 561, 666
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	7 cut(s)	211, 424, 615, 680, 749, 757, 842
Hpy8I	GTNNAC	3 cut(s)	346, 561, 666
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	3 cut(s)	11, 341, 707
HpyF3I	CTNAG	3 cut(s)	438, 770, 865
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	29, 107, 353, 575
HspAI	GCGC	1 cut(s)	652
Ksp22I	TGATCA	2 cut(s)	745, 847
Kzo9I	GATC	5 cut(s)	89, 191, 497, 745, 847
LmnI	GCTCC	2 cut(s)	389, 682
Lsp1109I	GCAGC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	164
MaeI	CTAG	5 cut(s)	270, 300, 386, 603, 813
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	5 cut(s)	91, 193, 499, 747, 849
MboI	GATC	5 cut(s)	89, 191, 497, 745, 847
MboII	GAAGA	3 cut(s)	729, 795, 848
MflI	RGATCY	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	3 cut(s)	363, 473, 577
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	3 cut(s)	445, 811, 874
Mox20I	TGGCCA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	2 cut(s)	576, 690
MslI	CAYNNNNRTG	2 cut(s)	354, 690
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	3 cut(s)	117, 166, 529
MvaI	CCWGG	2 cut(s)	117, 166
NciI	CCSGG	1 cut(s)	529
NdeI	CATATG	3 cut(s)	492, 565, 721
NdeII	GATC	5 cut(s)	89, 191, 497, 745, 847
NlaIII	CATG	4 cut(s)	29, 107, 353, 575
NlaIV	GGNNCC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	115, 164
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	115, 164
PspN4I	GGNNCC	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	4 cut(s)	30, 108, 238, 479
RsaNI	GTAC	4 cut(s)	29, 107, 237, 478
RseI	CAYNNNNRTG	2 cut(s)	354, 690
SaqAI	TTAA	2 cut(s)	576, 690
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	5 cut(s)	89, 191, 497, 745, 847
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	3 cut(s)	117, 166, 529
SexAI	ACCWGGT	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	354, 690
SmlI	CTYRAG	2 cut(s)	422, 613
SmoI	CTYRAG	2 cut(s)	422, 613
Sse9I	AATT	3 cut(s)	363, 473, 577
SsiI	CCGC	1 cut(s)	218
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	5 cut(s)	270, 300, 386, 603, 813
StyD4I	CCNGG	3 cut(s)	115, 164, 527
StyI	CCWWGG	1 cut(s)	269
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	363, 473, 577
TatI	WGTACW	2 cut(s)	106, 236
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	576, 690
Tru9I	TTAA	2 cut(s)	576, 690
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	410, 560, 729
TspGWI	ACGGA	1 cut(s)	599
VspI	ATTAAT	1 cut(s)	690
XceI	RCATGY	1 cut(s)	29
XmaJI	CCTAGG	1 cut(s)	269
XspI	CTAG	5 cut(s)	270, 300, 386, 603, 813
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.