Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027609.1

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2288

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgatgggagagttcatgcggatacacaccctcaaccttgactttagtacttcgctcactagttttcaggaggattgtttttcttgcatgcccaatctaatgtgcctttctctgtgcgagacaagaattttaaatctctggacaactattgctgcactttctaaactcccttctttggttgaacttcggtttcagcattggtcatgctgcaatgatgttgggccttattctgcatcacctagtcggaagtcacatcacaaaacttattcaaatcagcgaaataatggtagaacatcatccattaatattggggaactaacagaccagtactcaagcacagaagaggtgctcaggaatatgtttttgcttaataatgtggttataaatgatgatgaaagtagggctgaggattcagatgatagcgaactagacttttcaagtcccctgcaagaacatggttctgtggagcgtttgtcaaatgttttttcaagagggaacagtcagatcaatcaacagactgaggattctcttgataactttcagaatcaaaatgaggcagagcccttagctgatcccttcacaacgtatattggagacaattcagtgaaatatatttcttatcatgcttcgccaatatgttttgagaaatattatagagagtacatgatagcctcactacctcgtttgagaattttagataacttgccaattcgaaagattgatcaggaaactgcttggatgacattttcagaatattttgagcatgtaccatatcaaagaaagcataaagaaaatgtcattagtgtgttacaaaagcgtgaaataagatcaagtcaaaatcatgttcaaagtcctgggaaaaaagtatcaaatctctatggaaagtctcaatgcttctataccaggtctctttctgctgccaagctgggatcttgtgcttggccattcttgaacccgctttctttttcaggcagtactctggtaggtgaaagtaagagctttcgtcctaggcagtttgagtatcatccatccaactccagccttatcgtctttggaacattagatggtgaaatagttgtagtcaaccatgagaatgggaaaattgtcagttatatcccatcactaggagcaatgaatagtgtgctgggactctgttggctcaagaagtatccctctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

393

Amino Acids

44.82

Weight (kDa)

6.14

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AciI	CCGC	2 cut(s)	19, 956
AclWI	GGATC	2 cut(s)	566, 937
AcoI	YGGCCR	1 cut(s)	941
AcsI	RAATTY	2 cut(s)	126, 690
AfaI	GTAC	5 cut(s)	49, 329, 662, 768, 976
AfiI	CCNNNNNNNGG	2 cut(s)	175, 1124
AgsI	TTSAA	6 cut(s)	182, 270, 438, 489, 848, 952
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	2 cut(s)	853, 902
AluBI	AGCT	3 cut(s)	569, 925, 999
AluI	AGCT	3 cut(s)	569, 925, 999
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	4 cut(s)	113, 588, 891, 912
AlwI	GGATC	2 cut(s)	566, 937
AoxI	GGCC	2 cut(s)	221, 941
ApeKI	GCWGC	3 cut(s)	152, 207, 917
ApoI	RAATTY	2 cut(s)	126, 690
AseI	ATTAAT	1 cut(s)	303
AspA2I	CCTAGG	1 cut(s)	1007
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	228, 998, 1079
AsuII	TTCGAA	1 cut(s)	712
AvrII	CCTAGG	1 cut(s)	1007
BalI	TGGCCA	1 cut(s)	943
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	139, 194, 904
BccI	CCATC	3 cut(s)	1036, 1058, 1126
BciT130I	CCWGG	2 cut(s)	855, 904
BciVI	GTATCC	2 cut(s)	15, 1179
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	4 cut(s)	113, 588, 891, 912
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	5 cut(s)	60, 240, 428, 1008, 1124
BfuI	GTATCC	2 cut(s)	15, 1179
BisI	GCNGC	3 cut(s)	153, 208, 918
BlnI	CCTAGG	1 cut(s)	1007
BlsI	GCNGC	3 cut(s)	154, 209, 919
BmcAI	AGTACT	3 cut(s)	49, 329, 976
Bme1390I	CCNGG	2 cut(s)	855, 904
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	855, 904
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	1021
Bpu10I	CCTNAGC	3 cut(s)	350, 405, 565
Bpu14I	TTCGAA	1 cut(s)	712
BpuEI	CTTGAG	2 cut(s)	316, 1145
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	854, 1007
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 1124
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	2 cut(s)	217, 1137
BseBI	CCWGG	2 cut(s)	855, 904
BseDI	CCNNGG	2 cut(s)	854, 1007
BseGI	GGATG	4 cut(s)	296, 744, 1024, 1028
BseLI	CCNNNNNNNGG	2 cut(s)	175, 1124
BseMI	GCAATG	2 cut(s)	217, 1137
BseMII	CTCAG	3 cut(s)	364, 396, 510
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	139, 194, 904
BseYI	CCCAGC	2 cut(s)	925, 1144
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	223, 943
BsiHKAI	GWGCWC	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	426, 1161
BslI	CCNNNNNNNGG	2 cut(s)	175, 1124
BsmAI	GTCTC	4 cut(s)	113, 588, 891, 912
BsmFI	GGGAC	2 cut(s)	426, 1161
BsnI	GGCC	2 cut(s)	223, 943
Bso31I	GGTCTC	1 cut(s)	912
Bsp119I	TTCGAA	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	351, 564
Bsp143I	GATC	5 cut(s)	504, 571, 721, 827, 929
BspACI	CCGC	2 cut(s)	19, 956
BspANI	GGCC	2 cut(s)	223, 943
BspCNI	CTCAG	3 cut(s)	363, 397, 511
BspPI	GGATC	2 cut(s)	566, 937
BspT104I	TTCGAA	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	2 cut(s)	217, 1137
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	854, 1007
BssMI	GATC	5 cut(s)	504, 571, 721, 827, 929
BssT1I	CCWWGG	1 cut(s)	1007
Bst2UI	CCWGG	2 cut(s)	855, 904
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	5 cut(s)	350, 405, 519, 565, 1176
BstF5I	GGATG	4 cut(s)	296, 744, 1024, 1028
BstKTI	GATC	5 cut(s)	507, 574, 724, 830, 932
BstMAI	GTCTC	4 cut(s)	113, 588, 891, 912
BstMBI	GATC	5 cut(s)	504, 571, 721, 827, 929
BstNI	CCWGG	2 cut(s)	855, 904
BstNSI	RCATGY	2 cut(s)	91, 767
BstSCI	CCNGG	2 cut(s)	853, 902
BstV1I	GCAGC	3 cut(s)	139, 194, 904
BstX2I	RGATCY	1 cut(s)	929
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	1 cut(s)	929
BsuI	GTATCC	2 cut(s)	15, 1179
BsuRI	GGCC	2 cut(s)	223, 943
BtsCI	GGATG	4 cut(s)	296, 744, 1024, 1028
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	902
Csp6I	GTAC	5 cut(s)	48, 328, 661, 767, 975
CviAII	CATG	9 cut(s)	16, 88, 204, 455, 623, 664, 764, 842, 1088
CviQI	GTAC	5 cut(s)	48, 328, 661, 767, 975
DdeI	CTNAG	5 cut(s)	350, 405, 519, 565, 1176
DpnI	GATC	5 cut(s)	506, 573, 723, 829, 931
DpnII	GATC	5 cut(s)	504, 571, 721, 827, 929
DraI	TTTAAA	1 cut(s)	132
EaeI	YGGCCR	1 cut(s)	941
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	1007
Eco24I	GRGCYC	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	912
EcoRII	CCWGG	2 cut(s)	853, 902
EcoT14I	CCWWGG	1 cut(s)	1007
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	1007
FaeI	CATG	9 cut(s)	19, 91, 207, 458, 626, 667, 767, 845, 1091
FaqI	GGGAC	2 cut(s)	426, 1161
FatI	CATG	9 cut(s)	15, 87, 203, 454, 622, 663, 763, 841, 1087
FauI	CCCGC	1 cut(s)	963
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	153, 208, 918
FokI	GGATG	4 cut(s)	283, 751, 1011, 1015
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	153, 208, 918
FspBI	CTAG	5 cut(s)	60, 240, 428, 1008, 1124
GluI	GCNGC	3 cut(s)	153, 208, 918
GsaI	CCCAGC	2 cut(s)	929, 1148
GsuI	CTGGAG	1 cut(s)	1021
HaeIII	GGCC	2 cut(s)	223, 943
Hin1II	CATG	9 cut(s)	19, 91, 207, 458, 626, 667, 767, 845, 1091
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	4 cut(s)	410, 524, 544, 1149
HphI	GGTGA	3 cut(s)	228, 998, 1079
Hpy166II	GTNNAC	1 cut(s)	1084
Hpy188I	TCNGA	5 cut(s)	246, 415, 504, 543, 751
Hpy188III	TCNNGA	8 cut(s)	68, 139, 352, 489, 530, 725, 949, 1162
Hpy8I	GTNNAC	1 cut(s)	1084
HpyAV	CCTTC	2 cut(s)	180, 586
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	5 cut(s)	87, 155, 210, 233, 448
HpyF3I	CTNAG	5 cut(s)	350, 405, 519, 565, 1176
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	9 cut(s)	19, 91, 207, 458, 626, 667, 767, 845, 1091
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	5 cut(s)	504, 571, 721, 827, 929
LmnI	GCTCC	2 cut(s)	466, 1127
Lsp1109I	GCAGC	3 cut(s)	139, 194, 904
LweI	GCATC	1 cut(s)	242
MabI	ACCWGGT	1 cut(s)	902
MaeI	CTAG	5 cut(s)	60, 240, 428, 1008, 1124
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	2 cut(s)	249, 807
MalI	GATC	5 cut(s)	506, 573, 723, 829, 931
MboI	GATC	5 cut(s)	504, 571, 721, 827, 929
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	2 cut(s)	351, 564
MlsI	TGGCCA	1 cut(s)	943
MluCI	AATT	5 cut(s)	126, 598, 690, 708, 1101
MluNI	TGGCCA	1 cut(s)	943
MlyI	GAGTC	1 cut(s)	1143
MmeI	TCCRAC	2 cut(s)	224, 1056
MnlI	CCTC	9 cut(s)	41, 64, 337, 400, 485, 514, 547, 682, 690
Mox20I	TGGCCA	1 cut(s)	943
MscI	TGGCCA	1 cut(s)	943
MseI	TTAA	3 cut(s)	131, 303, 369
MslI	CAYNNNNRTG	2 cut(s)	803, 1092
Msp20I	TGGCCA	1 cut(s)	943
MspR9I	CCNGG	2 cut(s)	855, 904
MvaI	CCWGG	2 cut(s)	855, 904
NdeII	GATC	5 cut(s)	504, 571, 721, 827, 929
NlaIII	CATG	9 cut(s)	19, 91, 207, 458, 626, 667, 767, 845, 1091
NmuCI	GTSAC	1 cut(s)	249
NspI	RCATGY	2 cut(s)	91, 767
NspV	TTCGAA	1 cut(s)	712
PaeI	GCATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	410, 524, 544
PkrI	GCNGC	3 cut(s)	154, 209, 919
PleI	GAGTC	1 cut(s)	1143
PpsI	GAGTC	1 cut(s)	1143
PshBI	ATTAAT	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	853, 902
PspFI	CCCAGC	2 cut(s)	925, 1144
PspGI	CCWGG	2 cut(s)	853, 902
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	929
RsaI	GTAC	5 cut(s)	49, 329, 662, 768, 976
RsaNI	GTAC	5 cut(s)	48, 328, 661, 767, 975
RseI	CAYNNNNRTG	2 cut(s)	803, 1092
SaqAI	TTAA	3 cut(s)	131, 303, 369
SatI	GCNGC	3 cut(s)	153, 208, 918
Sau3AI	GATC	5 cut(s)	504, 571, 721, 827, 929
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	3 cut(s)	49, 329, 976
SchI	GAGTC	1 cut(s)	1143
ScrFI	CCNGG	2 cut(s)	855, 904
SduI	GDGCHC	2 cut(s)	351, 564
SexAI	ACCWGGT	1 cut(s)	902
SfaNI	GCATC	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	803, 1092
SmlI	CTYRAG	2 cut(s)	331, 1160
SmoI	CTYRAG	2 cut(s)	331, 1160
SpeI	ACTAGT	1 cut(s)	59
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	5 cut(s)	126, 598, 690, 708, 1101
SsiI	CCGC	2 cut(s)	19, 956
SspI	AATATT	3 cut(s)	307, 650, 755
SspMI	CTAG	5 cut(s)	60, 240, 428, 1008, 1124
StyD4I	CCNGG	2 cut(s)	853, 902
StyI	CCWWGG	1 cut(s)	1007
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	712
TasI	AATT	5 cut(s)	126, 598, 690, 708, 1101
TatI	WGTACW	4 cut(s)	47, 327, 660, 974
TfiI	GAWTC	3 cut(s)	410, 524, 544
Tru1I	TTAA	3 cut(s)	131, 303, 369
Tru9I	TTAA	3 cut(s)	131, 303, 369
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	3 cut(s)	152, 207, 917
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	3 cut(s)	4, 408, 1148
TspRI	CASTG	1 cut(s)	609
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	2 cut(s)	126, 690
XceI	RCATGY	2 cut(s)	91, 767
XmaJI	CCTAGG	1 cut(s)	1007
XspI	CTAG	5 cut(s)	60, 240, 428, 1008, 1124
ZrmI	AGTACT	3 cut(s)	49, 329, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.